FFCP PHASE1:Mm9::chr11:45758412..45758462,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72290|HGNC=|MCL_coexpression_id=87|UniProt=Q8BUV6,Q5SUH5|association_with_transcript=0bp_to_ENSMUST00000062458,ENSMUST00000129820,NM_028185,uc007ins.1,uc007int.1_5end|description=CAGE_peak_1_at_Lsm11_5end|id=chr11:45758412..45758462,-|ontology_enrichment_celltype=CL:0000117!6.70e-15!23;CL:0000337!6.70e-15!23;CL:0000540!9.68e-13!33;CL:0000047!9.68e-13!33;CL:0000031!9.68e-13!33;CL:0000404!9.68e-13!33;CL:0000034!6.33e-10!97;CL:0000393!1.16e-09!39;CL:0000211!1.16e-09!39;CL:0000723!1.70e-09!91;CL:0000048!1.70e-09!91;CL:0002319!4.73e-09!43;CL:0000221!1.04e-08!44;CL:0000133!1.04e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,6.70e-15,23;CL:0000337,6.70e-15,23;CL:0000540,9.68e-13,33;CL:0000047,9.68e-13,33;CL:0000031,9.68e-13,33;CL:0000404,9.68e-13,33;CL:0000034,6.31e-10,97;CL:0000393,1.16e-09,39;CL:0000211,1.16e-09,39;CL:0000723,1.69e-09,91;CL:0000048,1.69e-09,91;CL:0002319,4.73e-09,43;CL:0000221,1.04e-08,44;CL:0000133,1.04e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!5.05e-14!34;UBERON:0001017!7.75e-14!73;UBERON:0005743!7.75e-14!73;UBERON:0000073!3.98e-13!75;UBERON:0001016!3.98e-13!75;UBERON:0001049!8.67e-12!52;UBERON:0005068!8.67e-12!52;UBERON:0006241!8.67e-12!52;UBERON:0007135!8.67e-12!52;UBERON:0002346!3.27e-11!71;UBERON:0003075!3.27e-11!71;UBERON:0007284!3.27e-11!71;UBERON:0002791!9.88e-11!29;UBERON:0003528!9.88e-11!29;UBERON:0001893!9.88e-11!29;UBERON:0007811!3.24e-10!86;UBERON:0002616!4.11e-10!49;UBERON:0000955!2.61e-09!50;UBERON:0006238!2.61e-09!50;UBERON:0004121!3.50e-09!102;UBERON:0000924!3.50e-09!102;UBERON:0006601!3.50e-09!102;UBERON:0000153!3.82e-09!94;UBERON:0000956!5.46e-08!21;UBERON:0001869!5.46e-08!21;UBERON:0000203!5.46e-08!21;UBERON:0003080!1.72e-07!40;UBERON:0002780!3.45e-07!39;UBERON:0001890!3.45e-07!39;UBERON:0006240!3.45e-07!39;UBERON:0000033!3.68e-07!63;UBERON:0003056!5.94e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.05e-14,34;UBERON:0001017,7.85e-14,73;UBERON:0001016,4.03e-13,75;UBERON:0000073,4.88e-13,54;UBERON:0001049,8.79e-12,52;UBERON:0005068,8.79e-12,52;UBERON:0006241,8.79e-12,52;UBERON:0007135,8.79e-12,52;UBERON:0002346,8.55e-11,64;UBERON:0003075,8.55e-11,64;UBERON:0007284,8.55e-11,64;UBERON:0003528,9.88e-11,29;UBERON:0002791,9.88e-11,29;UBERON:0001893,9.88e-11,29;UBERON:0010314,4.88e-10,92;UBERON:0002616,1.22e-08,46;UBERON:0004121,1.30e-08,95;UBERON:0000924,1.30e-08,95;UBERON:0006601,1.30e-08,95;UBERON:0000956,5.46e-08,21;UBERON:0001869,5.46e-08,21;UBERON:0000203,5.46e-08,21;UBERON:0000955,6.77e-08,47;UBERON:0006238,6.77e-08,47;UBERON:0010371,6.87e-08,73;UBERON:0003080,1.74e-07,40;UBERON:0002780,3.49e-07,39;UBERON:0001890,3.49e-07,39;UBERON:0006240,3.49e-07,39;UBERON:0003056,6.00e-07,49|phase1_expression=4.64431656603902,1.04692622291808,2.27499619694768,2.11724947914781,1.00179145989269,2.85394762250213,5.13947809310157,6.84353614240354,10.13678799492,10.0647746318457,5.65019295144166,8.45584885350566,5.9920255475922,6.46910977900581,7.32841475994458,4.656931149966,5.59649502502517,3.15462165358238,4.79900517620086,3.81950686618227,3.82694805679814,3.77305614563364,3.39559725880616,2.23989391910769,1.83527424853736,1.72269589234506,3.01533397311352,2.58565479223067,3.6104449696711,2.52030129759931,4.8780712344167,12.065582795733,14.1464901144451,0,6.35473563452804,7.14808975041517,6.73758875665818,3.34825304589526,7.0320181007142,2.61761871986899,2.35292595212406,2.04913645487534,2.91306211818692,2.26614272356039,1.82478476195126,3.30384153891027,7.04152209913235,2.8343270329458,2.85592037554813,2.3331587888914,4.05960622713551,4.31257693094915,4.19456515144341,6.5282592781021,5.71359458542189,7.97504251711436,4.87106847895886,4.64104883049698,26.7057728334669,34.3844136526821,36.1283899998522,11.5207140903505,8.00365316500025,9.89889689009539,6.92206453796882,12.7886420690298,7.19040265244171,7.30014780110954,9.33206510776299,12.0155285115205,11.567872874326,77.4114167734308,83.2674399387583,11.7591167246356,12.0765293482978,18.3843757322004,19.82085857989,13.1517958227743,16.7431121249305,32.1802542061673,32.7525764096627,24.4829284161677,17.0301629390842,7.31591393041184,12.3766580699216,80.7282324197849,56.2368139156457,30.7559085611746,4.16494063332512,3.92972112555285,4.92769630792852,2.58127163094416,5.439770669662,5.39703191637817,1.29955283489534,3.58421509677868,1.68533304158102,3.2381761289831,4.67614808285164,5.3000936176551,4.22530259330042,8.98285341900225,2.54805239706646,0,4.76280290224671,6.33399663687746,8.08839112023653,2.62622923353838,1.8125651855302,2.82040064223167,9.1947223186052,7.30717147949139,11.992005857315,7.68685466818375,4.58595957829249,4.77533047052767,3.21353458054686,2.16899035379867,5.30766331169925,2.91180329905337,6.62524555381181,2.90925151881133,1.86391761218122,11.4184510834503,14.8707161837553,3.0654846625031,8.02761334189666,5.39912457894067,6.73472203487243,7.78911324905078,2.74500361691176,26.0104508873629,6.60532416730651,8.6943255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| ||
|EntrezGene=72290 | |||
|HGNC= | |||
|MCL_coexpression_id=87 | |||
|UniProt=Q8BUV6,Q5SUH5 | |||
|association_with_transcript=0bp_to_ENSMUST00000062458,ENSMUST00000129820,NM_028185,uc007ins.1,uc007int.1_5end | |||
|description=CAGE_peak_1_at_Lsm11_5end | |||
|id=chr11:45758412..45758462,- | |||
|ontology_enrichment_celltype=CL:0000117!6.70e-15!23;CL:0000337!6.70e-15!23;CL:0000540!9.68e-13!33;CL:0000047!9.68e-13!33;CL:0000031!9.68e-13!33;CL:0000404!9.68e-13!33;CL:0000034!6.33e-10!97;CL:0000393!1.16e-09!39;CL:0000211!1.16e-09!39;CL:0000723!1.70e-09!91;CL:0000048!1.70e-09!91;CL:0002319!4.73e-09!43;CL:0000221!1.04e-08!44;CL:0000133!1.04e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.70e-15,23;CL:0000337,6.70e-15,23;CL:0000540,9.68e-13,33;CL:0000047,9.68e-13,33;CL:0000031,9.68e-13,33;CL:0000404,9.68e-13,33;CL:0000034,6.31e-10,97;CL:0000393,1.16e-09,39;CL:0000211,1.16e-09,39;CL:0000723,1.69e-09,91;CL:0000048,1.69e-09,91;CL:0002319,4.73e-09,43;CL:0000221,1.04e-08,44;CL:0000133,1.04e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!5.05e-14!34;UBERON:0001017!7.75e-14!73;UBERON:0005743!7.75e-14!73;UBERON:0000073!3.98e-13!75;UBERON:0001016!3.98e-13!75;UBERON:0001049!8.67e-12!52;UBERON:0005068!8.67e-12!52;UBERON:0006241!8.67e-12!52;UBERON:0007135!8.67e-12!52;UBERON:0002346!3.27e-11!71;UBERON:0003075!3.27e-11!71;UBERON:0007284!3.27e-11!71;UBERON:0002791!9.88e-11!29;UBERON:0003528!9.88e-11!29;UBERON:0001893!9.88e-11!29;UBERON:0007811!3.24e-10!86;UBERON:0002616!4.11e-10!49;UBERON:0000955!2.61e-09!50;UBERON:0006238!2.61e-09!50;UBERON:0004121!3.50e-09!102;UBERON:0000924!3.50e-09!102;UBERON:0006601!3.50e-09!102;UBERON:0000153!3.82e-09!94;UBERON:0000956!5.46e-08!21;UBERON:0001869!5.46e-08!21;UBERON:0000203!5.46e-08!21;UBERON:0003080!1.72e-07!40;UBERON:0002780!3.45e-07!39;UBERON:0001890!3.45e-07!39;UBERON:0006240!3.45e-07!39;UBERON:0000033!3.68e-07!63;UBERON:0003056!5.94e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,5.05e-14,34;UBERON:0001017,7.85e-14,73;UBERON:0001016,4.03e-13,75;UBERON:0000073,4.88e-13,54;UBERON:0001049,8.79e-12,52;UBERON:0005068,8.79e-12,52;UBERON:0006241,8.79e-12,52;UBERON:0007135,8.79e-12,52;UBERON:0002346,8.55e-11,64;UBERON:0003075,8.55e-11,64;UBERON:0007284,8.55e-11,64;UBERON:0003528,9.88e-11,29;UBERON:0002791,9.88e-11,29;UBERON:0001893,9.88e-11,29;UBERON:0010314,4.88e-10,92;UBERON:0002616,1.22e-08,46;UBERON:0004121,1.30e-08,95;UBERON:0000924,1.30e-08,95;UBERON:0006601,1.30e-08,95;UBERON:0000956,5.46e-08,21;UBERON:0001869,5.46e-08,21;UBERON:0000203,5.46e-08,21;UBERON:0000955,6.77e-08,47;UBERON:0006238,6.77e-08,47;UBERON:0010371,6.87e-08,73;UBERON:0003080,1.74e-07,40;UBERON:0002780,3.49e-07,39;UBERON:0001890,3.49e-07,39;UBERON:0006240,3.49e-07,39;UBERON:0003056,6.00e-07,49 | |||
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| |||
|short_description=p1@Lsm11 | |||
}} |
Revision as of 19:42, 12 September 2013
Short description: | p1@Lsm11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lsm11_5end |
Coexpression cluster: | MCL_coexpression_mm9:87 |
Association with transcript: | 0bp_to_ENSMUST00000062458, ENSMUST00000129820, NM_028185, uc007ins.1, uc007int.1_5end |
EntrezGene: | Lsm11 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.70e-15 | 23 |
neuroblast (sensu Vertebrata) | 6.70e-15 | 23 |
neuron | 9.68e-13 | 33 |
neuronal stem cell | 9.68e-13 | 33 |
neuroblast | 9.68e-13 | 33 |
electrically signaling cell | 9.68e-13 | 33 |
stem cell | 6.31e-10 | 97 |
electrically responsive cell | 1.16e-09 | 39 |
electrically active cell | 1.16e-09 | 39 |
somatic stem cell | 1.69e-09 | 91 |
multi fate stem cell | 1.69e-09 | 91 |
neural cell | 4.73e-09 | 43 |
ectodermal cell | 1.04e-08 | 44 |
neurectodermal cell | 1.04e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
gray matter | 5.05e-14 | 34 |
central nervous system | 7.85e-14 | 73 |
nervous system | 4.03e-13 | 75 |
regional part of nervous system | 4.88e-13 | 54 |
neural tube | 8.79e-12 | 52 |
neural rod | 8.79e-12 | 52 |
future spinal cord | 8.79e-12 | 52 |
neural keel | 8.79e-12 | 52 |
neurectoderm | 8.55e-11 | 64 |
neural plate | 8.55e-11 | 64 |
presumptive neural plate | 8.55e-11 | 64 |
brain grey matter | 9.88e-11 | 29 |
regional part of telencephalon | 9.88e-11 | 29 |
telencephalon | 9.88e-11 | 29 |
structure with developmental contribution from neural crest | 4.88e-10 | 92 |
regional part of brain | 1.22e-08 | 46 |
ectoderm-derived structure | 1.30e-08 | 95 |
ectoderm | 1.30e-08 | 95 |
presumptive ectoderm | 1.30e-08 | 95 |
cerebral cortex | 5.46e-08 | 21 |
cerebral hemisphere | 5.46e-08 | 21 |
pallium | 5.46e-08 | 21 |
brain | 6.77e-08 | 47 |
future brain | 6.77e-08 | 47 |
ecto-epithelium | 6.87e-08 | 73 |
anterior neural tube | 1.74e-07 | 40 |
regional part of forebrain | 3.49e-07 | 39 |
forebrain | 3.49e-07 | 39 |
future forebrain | 3.49e-07 | 39 |
pre-chordal neural plate | 6.00e-07 | 49 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.