FFCP PHASE1:Mm9::chr11:87409166..87409221,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=170749|HGNC=|UniProt=Q5ND05|association_with_transcript=12bp_to_ENSMUST00000134216_5end|description=CAGE_peak_2_at_Mtmr4_5end|id=chr11:87409166..87409221,+|ontology_enrichment_celltype=CL:0000117!6.45e-15!23;CL:0000337!6.45e-15!23;CL:0000540!1.19e-14!33;CL:0000047!1.19e-14!33;CL:0000031!1.19e-14!33;CL:0000404!1.19e-14!33;CL:0000393!6.41e-13!39;CL:0000211!6.41e-13!39;CL:0000221!5.65e-12!44;CL:0000133!5.65e-12!44;CL:0002319!6.39e-12!43;CL:0000055!4.46e-10!50;CL:0002321!9.21e-08!70;CL:0000220!9.21e-08!70|ontology_enrichment_celltype_v019_2=CL:0000117,3.60e-15,23;CL:0000337,3.60e-15,23;CL:0000540,6.72e-15,33;CL:0000047,6.72e-15,33;CL:0000031,6.72e-15,33;CL:0000404,6.72e-15,33;CL:0000393,3.90e-13,39;CL:0000211,3.90e-13,39;CL:0000221,9.36e-12,44;CL:0000133,9.36e-12,44;CL:0002319,1.07e-11,43;CL:0002321,6.22e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.98e-23!75;UBERON:0001016!9.98e-23!75;UBERON:0001017!3.63e-22!73;UBERON:0005743!3.63e-22!73;UBERON:0004121!4.66e-22!102;UBERON:0000924!4.66e-22!102;UBERON:0006601!4.66e-22!102;UBERON:0002346!1.55e-19!71;UBERON:0003075!1.55e-19!71;UBERON:0007284!1.55e-19!71;UBERON:0000033!2.83e-19!63;UBERON:0001049!3.83e-18!52;UBERON:0005068!3.83e-18!52;UBERON:0006241!3.83e-18!52;UBERON:0007135!3.83e-18!52;UBERON:0000955!3.66e-17!50;UBERON:0006238!3.66e-17!50;UBERON:0003056!7.51e-17!49;UBERON:0002616!8.32e-17!49;UBERON:0002020!1.30e-15!34;UBERON:0003080!6.07e-14!40;UBERON:0002780!1.79e-13!39;UBERON:0001890!1.79e-13!39;UBERON:0006240!1.79e-13!39;UBERON:0002791!6.69e-13!29;UBERON:0003528!6.69e-13!29;UBERON:0001893!6.69e-13!29;UBERON:0000153!2.04e-11!94;UBERON:0007811!4.46e-10!86;UBERON:0000956!1.82e-08!21;UBERON:0001869!1.82e-08!21;UBERON:0000203!1.82e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.05e-23,95;UBERON:0000924,1.05e-23,95;UBERON:0006601,1.05e-23,95;UBERON:0001016,1.19e-22,75;UBERON:0002346,3.18e-22,64;UBERON:0003075,3.18e-22,64;UBERON:0007284,3.18e-22,64;UBERON:0001017,4.41e-22,73;UBERON:0000073,9.06e-20,54;UBERON:0010371,2.15e-19,73;UBERON:0001049,2.85e-18,52;UBERON:0005068,2.85e-18,52;UBERON:0006241,2.85e-18,52;UBERON:0007135,2.85e-18,52;UBERON:0003056,3.84e-17,49;UBERON:0002020,7.01e-16,34;UBERON:0000955,2.30e-15,47;UBERON:0006238,2.30e-15,47;UBERON:0002616,5.21e-15,46;UBERON:0003080,3.53e-14,40;UBERON:0002780,1.06e-13,39;UBERON:0001890,1.06e-13,39;UBERON:0006240,1.06e-13,39;UBERON:0003528,4.07e-13,29;UBERON:0002791,4.07e-13,29;UBERON:0001893,4.07e-13,29;UBERON:0010314,3.01e-11,92;UBERON:0000956,1.34e-08,21;UBERON:0001869,1.34e-08,21;UBERON:0000203,1.34e-08,21|phase1_expression=1.92178616525753,24.7772539423946,23.2049612088663,3.0246421130683,3.50627010962443,8.05820505177071,9.81173090501208,0,0,0.234064526321993,0,0,0,0,0.666219523631325,0.202475267389826,0,0.946386496074713,0.685572168028694,0.42438965179803,1.44573593256819,0.198581902401771,0,6.23970448894286,9.86459908588831,11.4846392823004,13.3536218809313,14.2211013572687,2.47030445293286,4.53654233567875,4.43461021310609,0,0,0,0,0.831173226792462,0.816677425049476,0,2.3440060335714,1.57057123192139,0,0,0,2.51793635951155,3.14268486780495,4.77221555620372,0.782391344348039,1.52617609466313,3.07560655828261,1.94429899074283,3.63964696225943,2.87505128729943,0.167782606057736,0,0,1.28629718017973,1.14613375975503,1.54701627683233,16.589949790487,16.398720357433,18.3811107016792,5.76035704517525,1.77858959222228,0,0,0.7104801149461,0.599200221036809,0.768436610643109,11.509546966241,12.8255641415106,10.7265730289205,8.2838785477103,7.73039893330647,16.1687854963739,16.3895755441184,13.7882817991503,23.1243350098716,14.8117312178818,11.6740965274745,15.4306956644327,13.5401712531566,16.1483144872596,13.1216009530649,9.00420176050688,10.6958773443767,14.142172102736,11.2473627831291,13.9799584368975,3.10477392666055,7.25486977025141,1.15945795480671,0,0,0,0,0,0.983110940922263,4.4311883870295,4.1565760736459,4.24007489412408,3.09855523508697,2.56652954828636,5.09610479413291,0,1.08245520505607,2.28023878927589,3.53867111510348,0.5709193985953,2.84831672011889,1.03909497345377,3.12273588179045,1.21786191324856,2.07553947530453,1.95939432718409,2.4693628498498,0.879666139307728,5.43828929015623,0.578397427679647,0.884610551949874,1.94120219936891,1.10420759230197,0.484875253135222,0,10.8328894894272,13.1951425292477,4.08731288333746,1.31796636956512,0,1.01656181658452,8.23848516726525,7.77751024791665,14.9528679014309,5.73620256634512,7.41574826257959,8.93488591606108,9.24775199486219,3.56437773476107,0.995255764880744,0,11.5743020737561,3.513251959993,4.59804208866946,5.76198815377118,6.32960234910003,6.05524842446818,4.35586648968489,4.8724896771059,4.39795730256327,6.25147179505242,4.9167580843633,3.69497360744293,4.16471891612392,4.44875598760957,3.1342694986995,1.85203922767149,5.17489093728082,1.40442637462647,0.772043721344145,0.852490498186778,2.27838349789052,1.17263029990548,1.80062061461015,1.89395788468168,1.3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| ||
|EntrezGene=170749 | |||
|HGNC= | |||
|UniProt=Q5ND05 | |||
|association_with_transcript=12bp_to_ENSMUST00000134216_5end | |||
|description=CAGE_peak_2_at_Mtmr4_5end | |||
|id=chr11:87409166..87409221,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.45e-15!23;CL:0000337!6.45e-15!23;CL:0000540!1.19e-14!33;CL:0000047!1.19e-14!33;CL:0000031!1.19e-14!33;CL:0000404!1.19e-14!33;CL:0000393!6.41e-13!39;CL:0000211!6.41e-13!39;CL:0000221!5.65e-12!44;CL:0000133!5.65e-12!44;CL:0002319!6.39e-12!43;CL:0000055!4.46e-10!50;CL:0002321!9.21e-08!70;CL:0000220!9.21e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.60e-15,23;CL:0000337,3.60e-15,23;CL:0000540,6.72e-15,33;CL:0000047,6.72e-15,33;CL:0000031,6.72e-15,33;CL:0000404,6.72e-15,33;CL:0000393,3.90e-13,39;CL:0000211,3.90e-13,39;CL:0000221,9.36e-12,44;CL:0000133,9.36e-12,44;CL:0002319,1.07e-11,43;CL:0002321,6.22e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.98e-23!75;UBERON:0001016!9.98e-23!75;UBERON:0001017!3.63e-22!73;UBERON:0005743!3.63e-22!73;UBERON:0004121!4.66e-22!102;UBERON:0000924!4.66e-22!102;UBERON:0006601!4.66e-22!102;UBERON:0002346!1.55e-19!71;UBERON:0003075!1.55e-19!71;UBERON:0007284!1.55e-19!71;UBERON:0000033!2.83e-19!63;UBERON:0001049!3.83e-18!52;UBERON:0005068!3.83e-18!52;UBERON:0006241!3.83e-18!52;UBERON:0007135!3.83e-18!52;UBERON:0000955!3.66e-17!50;UBERON:0006238!3.66e-17!50;UBERON:0003056!7.51e-17!49;UBERON:0002616!8.32e-17!49;UBERON:0002020!1.30e-15!34;UBERON:0003080!6.07e-14!40;UBERON:0002780!1.79e-13!39;UBERON:0001890!1.79e-13!39;UBERON:0006240!1.79e-13!39;UBERON:0002791!6.69e-13!29;UBERON:0003528!6.69e-13!29;UBERON:0001893!6.69e-13!29;UBERON:0000153!2.04e-11!94;UBERON:0007811!4.46e-10!86;UBERON:0000956!1.82e-08!21;UBERON:0001869!1.82e-08!21;UBERON:0000203!1.82e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.05e-23,95;UBERON:0000924,1.05e-23,95;UBERON:0006601,1.05e-23,95;UBERON:0001016,1.19e-22,75;UBERON:0002346,3.18e-22,64;UBERON:0003075,3.18e-22,64;UBERON:0007284,3.18e-22,64;UBERON:0001017,4.41e-22,73;UBERON:0000073,9.06e-20,54;UBERON:0010371,2.15e-19,73;UBERON:0001049,2.85e-18,52;UBERON:0005068,2.85e-18,52;UBERON:0006241,2.85e-18,52;UBERON:0007135,2.85e-18,52;UBERON:0003056,3.84e-17,49;UBERON:0002020,7.01e-16,34;UBERON:0000955,2.30e-15,47;UBERON:0006238,2.30e-15,47;UBERON:0002616,5.21e-15,46;UBERON:0003080,3.53e-14,40;UBERON:0002780,1.06e-13,39;UBERON:0001890,1.06e-13,39;UBERON:0006240,1.06e-13,39;UBERON:0003528,4.07e-13,29;UBERON:0002791,4.07e-13,29;UBERON:0001893,4.07e-13,29;UBERON:0010314,3.01e-11,92;UBERON:0000956,1.34e-08,21;UBERON:0001869,1.34e-08,21;UBERON:0000203,1.34e-08,21 | |||
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| |||
|short_description=p2@Mtmr4 | |||
}} |
Revision as of 21:21, 12 September 2013
Short description: | p2@Mtmr4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Mtmr4_5end |
Coexpression cluster: | NA |
Association with transcript: | 12bp_to_ENSMUST00000134216_5end |
EntrezGene: | Mtmr4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.60e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.60e-15 | 23 |
neuron | 6.72e-15 | 33 |
neuronal stem cell | 6.72e-15 | 33 |
neuroblast | 6.72e-15 | 33 |
electrically signaling cell | 6.72e-15 | 33 |
electrically responsive cell | 3.90e-13 | 39 |
electrically active cell | 3.90e-13 | 39 |
ectodermal cell | 9.36e-12 | 44 |
neurectodermal cell | 9.36e-12 | 44 |
neural cell | 1.07e-11 | 43 |
embryonic cell | 6.22e-08 | 70 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.05e-23 | 95 |
ectoderm | 1.05e-23 | 95 |
presumptive ectoderm | 1.05e-23 | 95 |
nervous system | 1.19e-22 | 75 |
neurectoderm | 3.18e-22 | 64 |
neural plate | 3.18e-22 | 64 |
presumptive neural plate | 3.18e-22 | 64 |
central nervous system | 4.41e-22 | 73 |
regional part of nervous system | 9.06e-20 | 54 |
ecto-epithelium | 2.15e-19 | 73 |
neural tube | 2.85e-18 | 52 |
neural rod | 2.85e-18 | 52 |
future spinal cord | 2.85e-18 | 52 |
neural keel | 2.85e-18 | 52 |
pre-chordal neural plate | 3.84e-17 | 49 |
gray matter | 7.01e-16 | 34 |
brain | 2.30e-15 | 47 |
future brain | 2.30e-15 | 47 |
regional part of brain | 5.21e-15 | 46 |
anterior neural tube | 3.53e-14 | 40 |
regional part of forebrain | 1.06e-13 | 39 |
forebrain | 1.06e-13 | 39 |
future forebrain | 1.06e-13 | 39 |
brain grey matter | 4.07e-13 | 29 |
regional part of telencephalon | 4.07e-13 | 29 |
telencephalon | 4.07e-13 | 29 |
structure with developmental contribution from neural crest | 3.01e-11 | 92 |
cerebral cortex | 1.34e-08 | 21 |
cerebral hemisphere | 1.34e-08 | 21 |
pallium | 1.34e-08 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.