FFCP PHASE1:Hg19::chr3:173116225..173116242,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22871|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14291|TSSclassifier=W|UniProt=Q8N2Q7|association_with_transcript=0bp_to_ENST00000457714_5end|coexpression_cluster_id=C1022|description=CAGE_peak_10_at_NLGN1_5end|id=chr3:173116225..173116242,+|ontology_enrichment_celltype=CL:0000064!1.09e-08!3;CL:0005012!1.09e-08!3;CL:0000067!1.09e-08!3;CL:0002304!1.09e-08!3;CL:0002605!1.42e-08!3;CL:0000075!4.13e-08!27|ontology_enrichment_celltype_v019=CL:0000064;9.74e-39;3!CL:0000067;9.74e-39;3!CL:0005012;9.74e-39;3!CL:0002304;9.74e-39;3!CL:0002605;3.94e-38;3!CL:0000306;2.08e-28;4!CL:0002222;2.08e-28;4!CL:0002224;2.08e-28;4!CL:0000128;9.32e-17;7!CL:0000126;9.32e-17;7!CL:0000127;9.32e-17;7!CL:0000075;1.96e-16;27!CL:0000342;5.49e-14;1!CL:0002565;5.49e-14;1!CL:0000243;3.17e-07;15!CL:0000125;3.17e-07;15|ontology_enrichment_celltype_v019_2=CL:0000064,8.59e-39,3;CL:0000067,8.59e-39,3;CL:0005012,8.59e-39,3;CL:0002304,8.59e-39,3;CL:0002605,3.48e-38,3;CL:0000306,1.36e-28,4;CL:0002222,1.36e-28,4;CL:0002224,1.36e-28,4;CL:0000128,8.84e-17,7;CL:0000126,8.84e-17,7;CL:0000127,8.84e-17,7;CL:0002453,8.84e-17,7;CL:0000075,1.69e-16,27;CL:0000342,5.85e-14,1;CL:0002565,5.85e-14,1;CL:0000243,3.11e-07,15;CL:0000125,3.11e-07,15;CL:0000030,3.11e-07,15;CL:0000339,3.11e-07,15;CL:0000133,3.87e-07,59|ontology_enrichment_development_v019=CL:0000339;3.17e-07;15|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4468;1.87e-07;2|ontology_enrichment_disease_v019_2=DOID:4468,2.25e-07,2|ontology_enrichment_uberon=UBERON:0007625!5.49e-14!11;UBERON:0003075!3.53e-11!86;UBERON:0007284!3.53e-11!86;UBERON:0000488!5.38e-11!4;UBERON:0000970!1.31e-10!20;UBERON:0002346!2.20e-10!90;UBERON:0003056!4.97e-10!61;UBERON:0002104!5.46e-10!21;UBERON:0000019!2.76e-09!19;UBERON:0000047!2.76e-09!19;UBERON:0004088!2.76e-09!19;UBERON:0003072!2.76e-09!19;UBERON:0003071!2.76e-09!19;UBERON:0004128!2.76e-09!19;UBERON:0000020!6.50e-09!23;UBERON:0001778!1.09e-08!3;UBERON:0001775!1.09e-08!3;UBERON:0000369!1.09e-08!4;UBERON:0002435!1.09e-08!4;UBERON:0000204!1.09e-08!4;UBERON:0010082!1.09e-08!4;UBERON:0001032!1.91e-08!24;UBERON:0004456!1.91e-08!24;UBERON:0001456!3.32e-08!21;UBERON:0001801!3.35e-08!14;UBERON:0002203!2.92e-07!6;UBERON:0001768!2.92e-07!6;UBERON:0005383!3.22e-07!3;UBERON:0005382!3.22e-07!3;UBERON:0005174!4.11e-07!5;UBERON:0001137!4.11e-07!5|ontology_enrichment_uberon_v019=UBERON:0007625;4.21e-55;11!UBERON:0000488;6.84e-51;4!UBERON:0001801;3.18e-43;14!UBERON:0001778;9.74e-39;3!UBERON:0001775;9.74e-39;3!UBERON:0002203;4.31e-34;6!UBERON:0001768;4.31e-34;6!UBERON:0002200;4.31e-34;6!UBERON:0000019;9.49e-32;19!UBERON:0000047;9.49e-32;19!UBERON:0004088;9.49e-32;19!UBERON:0010230;9.49e-32;19!UBERON:0000970;3.85e-30;20!UBERON:0002104;1.10e-28;21!UBERON:0001456;1.10e-28;21!UBERON:0010077;2.08e-28;4!UBERON:0005389;2.08e-28;4!UBERON:0000484;2.08e-28;4!UBERON:0000965;2.08e-28;4!UBERON:0001803;2.08e-28;4!UBERON:0000020;3.75e-26;23!UBERON:0001032;4.81e-25;24!UBERON:0004456;4.81e-25;24!UBERON:0010371;6.53e-19;31!UBERON:0006876;9.02e-19;11!UBERON:0002506;5.49e-14;1!UBERON:0001769;5.49e-14;1!UBERON:0001444;1.62e-08;48!UBERON:0000007;1.87e-07;2!UBERON:0000033;1.96e-07;50|ontology_enrichment_uberon_v019_2=UBERON:0007625,2.82e-55,11;UBERON:0000488,6.43e-51,4;UBERON:0001801,2.32e-43,14;UBERON:0001778,8.59e-39,3;UBERON:0001775,8.59e-39,3;UBERON:0002203,4.14e-34,6;UBERON:0001768,4.14e-34,6;UBERON:0002200,4.14e-34,6;UBERON:0000019,3.10e-30,20;UBERON:0000047,3.10e-30,20;UBERON:0010312,3.10e-30,20;UBERON:0004088,3.10e-30,20;UBERON:0010230,3.10e-30,20;UBERON:0003072,3.10e-30,20;UBERON:0004128,3.10e-30,20;UBERON:0003071,3.10e-30,20;UBERON:0000970,8.94e-29,21;UBERON:0002104,8.94e-29,21;UBERON:0010077,1.36e-28,4;UBERON:0005389,1.36e-28,4;UBERON:0000484,1.36e-28,4;UBERON:0002546,1.36e-28,4;UBERON:0000965,1.36e-28,4;UBERON:0001803,1.36e-28,4;UBERON:0003073,1.36e-28,4;UBERON:0005426,1.36e-28,4;UBERON:0001456,1.90e-27,22;UBERON:0000020,4.02e-25,24;UBERON:0001032,4.02e-25,24;UBERON:0004456,4.02e-25,24;UBERON:0003056,4.07e-23,61;UBERON:0003075,3.11e-20,82;UBERON:0007284,3.11e-20,82;UBERON:0005085,2.43e-19,31;UBERON:0002346,3.08e-19,86;UBERON:0006876,8.82e-19,11;UBERON:0010371,1.09e-15,104;UBERON:0000076,1.22e-14,8;UBERON:0002506,5.85e-14,1;UBERON:0001769,5.85e-14,1;UBERON:0010314,4.56e-12,132;UBERON:0001444,4.92e-12,49;UBERON:0000033,1.86e-10,56;UBERON:0000153,2.19e-09,62;UBERON:0007811,2.19e-09,62;UBERON:0004121,7.48e-09,171;UBERON:0000924,7.48e-09,171;UBERON:0006601,7.48e-09,171;UBERON:0000007,1.99e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0.492484232307152,0,0,3.43483184557268,1.64249310087461,2.00868223351684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.434539556882471,0,0,10.3042950708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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22871 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14291 | |||
|TSSclassifier=W | |||
|UniProt=Q8N2Q7 | |||
|association_with_transcript=0bp_to_ENST00000457714_5end | |||
|coexpression_cluster_id=C1022 | |||
|description=CAGE_peak_10_at_NLGN1_5end | |||
|id=chr3:173116225..173116242,+ | |||
|ontology_enrichment_celltype=CL:0000064!1.09e-08!3;CL:0005012!1.09e-08!3;CL:0000067!1.09e-08!3;CL:0002304!1.09e-08!3;CL:0002605!1.42e-08!3;CL:0000075!4.13e-08!27 | |||
|ontology_enrichment_celltype_v019=CL:0000064;9.74e-39;3!CL:0000067;9.74e-39;3!CL:0005012;9.74e-39;3!CL:0002304;9.74e-39;3!CL:0002605;3.94e-38;3!CL:0000306;2.08e-28;4!CL:0002222;2.08e-28;4!CL:0002224;2.08e-28;4!CL:0000128;9.32e-17;7!CL:0000126;9.32e-17;7!CL:0000127;9.32e-17;7!CL:0000075;1.96e-16;27!CL:0000342;5.49e-14;1!CL:0002565;5.49e-14;1!CL:0000243;3.17e-07;15!CL:0000125;3.17e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,8.59e-39,3;CL:0000067,8.59e-39,3;CL:0005012,8.59e-39,3;CL:0002304,8.59e-39,3;CL:0002605,3.48e-38,3;CL:0000306,1.36e-28,4;CL:0002222,1.36e-28,4;CL:0002224,1.36e-28,4;CL:0000128,8.84e-17,7;CL:0000126,8.84e-17,7;CL:0000127,8.84e-17,7;CL:0002453,8.84e-17,7;CL:0000075,1.69e-16,27;CL:0000342,5.85e-14,1;CL:0002565,5.85e-14,1;CL:0000243,3.11e-07,15;CL:0000125,3.11e-07,15;CL:0000030,3.11e-07,15;CL:0000339,3.11e-07,15;CL:0000133,3.87e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000339;3.17e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4468;1.87e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,2.25e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007625!5.49e-14!11;UBERON:0003075!3.53e-11!86;UBERON:0007284!3.53e-11!86;UBERON:0000488!5.38e-11!4;UBERON:0000970!1.31e-10!20;UBERON:0002346!2.20e-10!90;UBERON:0003056!4.97e-10!61;UBERON:0002104!5.46e-10!21;UBERON:0000019!2.76e-09!19;UBERON:0000047!2.76e-09!19;UBERON:0004088!2.76e-09!19;UBERON:0003072!2.76e-09!19;UBERON:0003071!2.76e-09!19;UBERON:0004128!2.76e-09!19;UBERON:0000020!6.50e-09!23;UBERON:0001778!1.09e-08!3;UBERON:0001775!1.09e-08!3;UBERON:0000369!1.09e-08!4;UBERON:0002435!1.09e-08!4;UBERON:0000204!1.09e-08!4;UBERON:0010082!1.09e-08!4;UBERON:0001032!1.91e-08!24;UBERON:0004456!1.91e-08!24;UBERON:0001456!3.32e-08!21;UBERON:0001801!3.35e-08!14;UBERON:0002203!2.92e-07!6;UBERON:0001768!2.92e-07!6;UBERON:0005383!3.22e-07!3;UBERON:0005382!3.22e-07!3;UBERON:0005174!4.11e-07!5;UBERON:0001137!4.11e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;4.21e-55;11!UBERON:0000488;6.84e-51;4!UBERON:0001801;3.18e-43;14!UBERON:0001778;9.74e-39;3!UBERON:0001775;9.74e-39;3!UBERON:0002203;4.31e-34;6!UBERON:0001768;4.31e-34;6!UBERON:0002200;4.31e-34;6!UBERON:0000019;9.49e-32;19!UBERON:0000047;9.49e-32;19!UBERON:0004088;9.49e-32;19!UBERON:0010230;9.49e-32;19!UBERON:0000970;3.85e-30;20!UBERON:0002104;1.10e-28;21!UBERON:0001456;1.10e-28;21!UBERON:0010077;2.08e-28;4!UBERON:0005389;2.08e-28;4!UBERON:0000484;2.08e-28;4!UBERON:0000965;2.08e-28;4!UBERON:0001803;2.08e-28;4!UBERON:0000020;3.75e-26;23!UBERON:0001032;4.81e-25;24!UBERON:0004456;4.81e-25;24!UBERON:0010371;6.53e-19;31!UBERON:0006876;9.02e-19;11!UBERON:0002506;5.49e-14;1!UBERON:0001769;5.49e-14;1!UBERON:0001444;1.62e-08;48!UBERON:0000007;1.87e-07;2!UBERON:0000033;1.96e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,2.82e-55,11;UBERON:0000488,6.43e-51,4;UBERON:0001801,2.32e-43,14;UBERON:0001778,8.59e-39,3;UBERON:0001775,8.59e-39,3;UBERON:0002203,4.14e-34,6;UBERON:0001768,4.14e-34,6;UBERON:0002200,4.14e-34,6;UBERON:0000019,3.10e-30,20;UBERON:0000047,3.10e-30,20;UBERON:0010312,3.10e-30,20;UBERON:0004088,3.10e-30,20;UBERON:0010230,3.10e-30,20;UBERON:0003072,3.10e-30,20;UBERON:0004128,3.10e-30,20;UBERON:0003071,3.10e-30,20;UBERON:0000970,8.94e-29,21;UBERON:0002104,8.94e-29,21;UBERON:0010077,1.36e-28,4;UBERON:0005389,1.36e-28,4;UBERON:0000484,1.36e-28,4;UBERON:0002546,1.36e-28,4;UBERON:0000965,1.36e-28,4;UBERON:0001803,1.36e-28,4;UBERON:0003073,1.36e-28,4;UBERON:0005426,1.36e-28,4;UBERON:0001456,1.90e-27,22;UBERON:0000020,4.02e-25,24;UBERON:0001032,4.02e-25,24;UBERON:0004456,4.02e-25,24;UBERON:0003056,4.07e-23,61;UBERON:0003075,3.11e-20,82;UBERON:0007284,3.11e-20,82;UBERON:0005085,2.43e-19,31;UBERON:0002346,3.08e-19,86;UBERON:0006876,8.82e-19,11;UBERON:0010371,1.09e-15,104;UBERON:0000076,1.22e-14,8;UBERON:0002506,5.85e-14,1;UBERON:0001769,5.85e-14,1;UBERON:0010314,4.56e-12,132;UBERON:0001444,4.92e-12,49;UBERON:0000033,1.86e-10,56;UBERON:0000153,2.19e-09,62;UBERON:0007811,2.19e-09,62;UBERON:0004121,7.48e-09,171;UBERON:0000924,7.48e-09,171;UBERON:0006601,7.48e-09,171;UBERON:0000007,1.99e-07,2 | |||
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|short_description=p10@NLGN1 | |||
}} |
Revision as of 22:47, 12 September 2013
Short description: | p10@NLGN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_NLGN1_5end |
Coexpression cluster: | C1022_Ciliary_Lens_Astrocyte_Neural_Iris_retina_Hair |
Association with transcript: | 0bp_to_ENST00000457714_5end |
EntrezGene: | NLGN1 |
HGNC: | 14291 |
UniProt: | Q8N2Q7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 8.59e-39 | 3 |
ciliated epithelial cell | 8.59e-39 | 3 |
multi-ciliated epithelial cell | 8.59e-39 | 3 |
non-pigmented ciliary epithelial cell | 8.59e-39 | 3 |
astrocyte of the cerebral cortex | 3.48e-38 | 3 |
crystallin accumulating cell | 1.36e-28 | 4 |
vertebrate lens cell | 1.36e-28 | 4 |
lens epithelial cell | 1.36e-28 | 4 |
oligodendrocyte | 8.84e-17 | 7 |
macroglial cell | 8.84e-17 | 7 |
astrocyte | 8.84e-17 | 7 |
oligodendrocyte precursor cell | 8.84e-17 | 7 |
columnar/cuboidal epithelial cell | 1.69e-16 | 27 |
pigment cell (sensu Vertebrata) | 5.85e-14 | 1 |
iris pigment epithelial cell | 5.85e-14 | 1 |
glial cell (sensu Vertebrata) | 3.11e-07 | 15 |
glial cell | 3.11e-07 | 15 |
glioblast | 3.11e-07 | 15 |
glioblast (sensu Vertebrata) | 3.11e-07 | 15 |
neurectodermal cell | 3.87e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 2.25e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.