FFCP PHASE1:Mm9::chrX:90920427..90920500,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=236899|HGNC=|MCL_coexpression_id=883|UniProt=Q811Q9,A2A450|association_with_transcript=0bp_to_ENSMUST00000045898,NM_211138,uc009tsw.1_5end|description=CAGE_peak_1_at_Pcyt1b_5end|id=chrX:90920427..90920500,+|ontology_enrichment_celltype=CL:0000117!6.74e-14!23;CL:0000337!6.74e-14!23;CL:0000540!1.00e-12!33;CL:0000047!1.00e-12!33;CL:0000031!1.00e-12!33;CL:0000404!1.00e-12!33;CL:0000393!1.58e-11!39;CL:0000211!1.58e-11!39;CL:0000221!1.78e-08!44;CL:0000133!1.78e-08!44;CL:0002319!3.12e-08!43;CL:0000055!3.61e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,7.63e-15,23;CL:0000337,7.63e-15,23;CL:0000540,1.39e-13,33;CL:0000047,1.39e-13,33;CL:0000031,1.39e-13,33;CL:0000404,1.39e-13,33;CL:0000393,7.48e-12,39;CL:0000211,7.48e-12,39;CL:0000221,1.10e-08,44;CL:0000133,1.10e-08,44;CL:0002319,2.01e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.19e-21!73;UBERON:0005743!6.19e-21!73;UBERON:0000073!3.60e-20!75;UBERON:0001016!3.60e-20!75;UBERON:0002346!1.10e-19!71;UBERON:0003075!1.10e-19!71;UBERON:0007284!1.10e-19!71;UBERON:0001049!3.01e-19!52;UBERON:0005068!3.01e-19!52;UBERON:0006241!3.01e-19!52;UBERON:0007135!3.01e-19!52;UBERON:0000033!3.39e-19!63;UBERON:0000955!6.20e-18!50;UBERON:0006238!6.20e-18!50;UBERON:0003056!1.95e-17!49;UBERON:0002616!2.21e-17!49;UBERON:0004121!2.15e-16!102;UBERON:0000924!2.15e-16!102;UBERON:0006601!2.15e-16!102;UBERON:0003080!1.97e-15!40;UBERON:0002020!4.65e-15!34;UBERON:0002780!7.20e-15!39;UBERON:0001890!7.20e-15!39;UBERON:0006240!7.20e-15!39;UBERON:0002791!2.08e-12!29;UBERON:0003528!2.08e-12!29;UBERON:0001893!2.08e-12!29;UBERON:0007811!9.31e-09!86;UBERON:0000153!1.63e-08!94;UBERON:0000956!2.20e-08!21;UBERON:0001869!2.20e-08!21;UBERON:0000203!2.20e-08!21;UBERON:0000025!5.21e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.63e-22,64;UBERON:0003075,1.63e-22,64;UBERON:0007284,1.63e-22,64;UBERON:0001017,4.64e-22,73;UBERON:0001016,3.54e-21,75;UBERON:0000073,5.25e-21,54;UBERON:0001049,5.15e-20,52;UBERON:0005068,5.15e-20,52;UBERON:0006241,5.15e-20,52;UBERON:0007135,5.15e-20,52;UBERON:0004121,1.48e-18,95;UBERON:0000924,1.48e-18,95;UBERON:0006601,1.48e-18,95;UBERON:0003056,3.24e-18,49;UBERON:0010371,4.48e-18,73;UBERON:0000955,6.41e-17,47;UBERON:0006238,6.41e-17,47;UBERON:0002616,2.42e-16,46;UBERON:0003080,4.78e-16,40;UBERON:0002020,1.28e-15,34;UBERON:0002780,1.91e-15,39;UBERON:0001890,1.91e-15,39;UBERON:0006240,1.91e-15,39;UBERON:0003528,8.81e-13,29;UBERON:0002791,8.81e-13,29;UBERON:0001893,8.81e-13,29;UBERON:0010314,4.09e-12,92;UBERON:0000956,1.75e-08,21;UBERON:0001869,1.75e-08,21;UBERON:0000203,1.75e-08,21;UBERON:0000025,3.99e-07,114|phase1_expression=2.7225304007815,0,0,0,0,0.503637815735669,0.467225281191051,0,0,0,0,0,0,0,3.99731714178795,7.69406016081339,8.39474253753776,0.157731082679119,0.548457734422955,0.84877930359606,2.29616883407888,0.198581902401771,0.261199789138935,0.159992422793407,0.22940928106717,0,0,0,0,0,0,6.35030673459631,1.23012957516914,0,0,0,0,0.418531630736908,0,0,0,0.683045484958446,0,2.26614272356039,2.53442328048786,2.38610777810186,0,0.872100625521786,1.09843091367236,0.972149495371417,1.81982348112971,0,0.167782606057736,0,0,2.31533492432352,0.573066879877513,0.515672092277442,12.9482534950143,10.0508286061686,10.1413024560989,0,0.889294796111139,0,0,0,0.299600110518405,1.15265491596466,15.1386833970377,17.8207838597832,14.9330722559481,10.8547374073445,6.62605622854841,15.5563315002992,16.1020391310637,22.0612508786405,14.3150645299205,7.78892762319645,9.83081812839958,19.6510568717989,18.9379422256988,17.7110545989298,9.49222196604695,7.31591393041184,5.80633341551878,11.1958862479994,13.5253096759148,15.8439528951505,0.302904773332736,1.5870027622425,0,0,0,0,0,0,1.40444420131752,1.53387290320252,1.55871602761721,0.70667914902068,4.92951969218382,0,5.09610479413291,0,0.649473123033642,1.52015919285059,1.51657333504435,0.5709193985953,0,0.742210695324124,2.25530924795977,0.913396434936424,2.07553947530453,1.20578112442098,1.52865319276416,0.502666365318702,0,0.144599356919912,3.5384422077995,2.42650274921114,6.62524555381181,3.39412677194655,1.86391761218122,7.02673912827713,4.60782754989601,0.510914110417183,0.359445373517761,0,0,11.6836698735762,6.40500843946077,13.6963243803022,11.4724051326902,13.0414883238469,11.4283424507758,10.5456820994042,2.24046600470696,5.22509276562391,0.252722758433675,1.26265113531884,2.99277018814219,5.0578462975364,4.32149111532838,6.63101198477146,4.89862793889561,8.07116437794554,5.99691037182265,5.69147415625834,4.31135985865684,4.16033376369202,3.69497360744293,1.31517439456545,1.39023624612799,2.089512999133,0.61734640922383,1.59227413454795,0,0,0,1.65700618028402,1.17263029990548,1.98068267607116,0.473489471170421,0.787056926989615,0.462801338662135,0.232533944750408,1.07309360559848,0,0.329119699826961,0.164167464079095,0.324275238183423,0,0.219550115291051,0.268412837520744,9.46304768538573,19.2431625149262,0.330418782983798,0.264450566663544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| ||
|EntrezGene=236899 | |||
|HGNC= | |||
|MCL_coexpression_id=883 | |||
|UniProt=Q811Q9,A2A450 | |||
|association_with_transcript=0bp_to_ENSMUST00000045898,NM_211138,uc009tsw.1_5end | |||
|description=CAGE_peak_1_at_Pcyt1b_5end | |||
|id=chrX:90920427..90920500,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.74e-14!23;CL:0000337!6.74e-14!23;CL:0000540!1.00e-12!33;CL:0000047!1.00e-12!33;CL:0000031!1.00e-12!33;CL:0000404!1.00e-12!33;CL:0000393!1.58e-11!39;CL:0000211!1.58e-11!39;CL:0000221!1.78e-08!44;CL:0000133!1.78e-08!44;CL:0002319!3.12e-08!43;CL:0000055!3.61e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.63e-15,23;CL:0000337,7.63e-15,23;CL:0000540,1.39e-13,33;CL:0000047,1.39e-13,33;CL:0000031,1.39e-13,33;CL:0000404,1.39e-13,33;CL:0000393,7.48e-12,39;CL:0000211,7.48e-12,39;CL:0000221,1.10e-08,44;CL:0000133,1.10e-08,44;CL:0002319,2.01e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.19e-21!73;UBERON:0005743!6.19e-21!73;UBERON:0000073!3.60e-20!75;UBERON:0001016!3.60e-20!75;UBERON:0002346!1.10e-19!71;UBERON:0003075!1.10e-19!71;UBERON:0007284!1.10e-19!71;UBERON:0001049!3.01e-19!52;UBERON:0005068!3.01e-19!52;UBERON:0006241!3.01e-19!52;UBERON:0007135!3.01e-19!52;UBERON:0000033!3.39e-19!63;UBERON:0000955!6.20e-18!50;UBERON:0006238!6.20e-18!50;UBERON:0003056!1.95e-17!49;UBERON:0002616!2.21e-17!49;UBERON:0004121!2.15e-16!102;UBERON:0000924!2.15e-16!102;UBERON:0006601!2.15e-16!102;UBERON:0003080!1.97e-15!40;UBERON:0002020!4.65e-15!34;UBERON:0002780!7.20e-15!39;UBERON:0001890!7.20e-15!39;UBERON:0006240!7.20e-15!39;UBERON:0002791!2.08e-12!29;UBERON:0003528!2.08e-12!29;UBERON:0001893!2.08e-12!29;UBERON:0007811!9.31e-09!86;UBERON:0000153!1.63e-08!94;UBERON:0000956!2.20e-08!21;UBERON:0001869!2.20e-08!21;UBERON:0000203!2.20e-08!21;UBERON:0000025!5.21e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.63e-22,64;UBERON:0003075,1.63e-22,64;UBERON:0007284,1.63e-22,64;UBERON:0001017,4.64e-22,73;UBERON:0001016,3.54e-21,75;UBERON:0000073,5.25e-21,54;UBERON:0001049,5.15e-20,52;UBERON:0005068,5.15e-20,52;UBERON:0006241,5.15e-20,52;UBERON:0007135,5.15e-20,52;UBERON:0004121,1.48e-18,95;UBERON:0000924,1.48e-18,95;UBERON:0006601,1.48e-18,95;UBERON:0003056,3.24e-18,49;UBERON:0010371,4.48e-18,73;UBERON:0000955,6.41e-17,47;UBERON:0006238,6.41e-17,47;UBERON:0002616,2.42e-16,46;UBERON:0003080,4.78e-16,40;UBERON:0002020,1.28e-15,34;UBERON:0002780,1.91e-15,39;UBERON:0001890,1.91e-15,39;UBERON:0006240,1.91e-15,39;UBERON:0003528,8.81e-13,29;UBERON:0002791,8.81e-13,29;UBERON:0001893,8.81e-13,29;UBERON:0010314,4.09e-12,92;UBERON:0000956,1.75e-08,21;UBERON:0001869,1.75e-08,21;UBERON:0000203,1.75e-08,21;UBERON:0000025,3.99e-07,114 | |||
|phase1_expression=2.7225304007815,0,0,0,0,0.503637815735669,0.467225281191051,0,0,0,0,0,0,0,3.99731714178795,7.69406016081339,8.39474253753776,0.157731082679119,0.548457734422955,0.84877930359606,2.29616883407888,0.198581902401771,0.261199789138935,0.159992422793407,0.22940928106717,0,0,0,0,0,0,6.35030673459631,1.23012957516914,0,0,0,0,0.418531630736908,0,0,0,0.683045484958446,0,2.26614272356039,2.53442328048786,2.38610777810186,0,0.872100625521786,1.09843091367236,0.972149495371417,1.81982348112971,0,0.167782606057736,0,0,2.31533492432352,0.573066879877513,0.515672092277442,12.9482534950143,10.0508286061686,10.1413024560989,0,0.889294796111139,0,0,0,0.299600110518405,1.15265491596466,15.1386833970377,17.8207838597832,14.9330722559481,10.8547374073445,6.62605622854841,15.5563315002992,16.1020391310637,22.0612508786405,14.3150645299205,7.78892762319645,9.83081812839958,19.6510568717989,18.9379422256988,17.7110545989298,9.49222196604695,7.31591393041184,5.80633341551878,11.1958862479994,13.5253096759148,15.8439528951505,0.302904773332736,1.5870027622425,0,0,0,0,0,0,1.40444420131752,1.53387290320252,1.55871602761721,0.70667914902068,4.92951969218382,0,5.09610479413291,0,0.649473123033642,1.52015919285059,1.51657333504435,0.5709193985953,0,0.742210695324124,2.25530924795977,0.913396434936424,2.07553947530453,1.20578112442098,1.52865319276416,0.502666365318702,0,0.144599356919912,3.5384422077995,2.42650274921114,6.62524555381181,3.39412677194655,1.86391761218122,7.02673912827713,4.60782754989601,0.510914110417183,0.359445373517761,0,0,11.6836698735762,6.40500843946077,13.6963243803022,11.4724051326902,13.0414883238469,11.4283424507758,10.5456820994042,2.24046600470696,5.22509276562391,0.252722758433675,1.26265113531884,2.99277018814219,5.0578462975364,4.32149111532838,6.63101198477146,4.89862793889561,8.07116437794554,5.99691037182265,5.69147415625834,4.31135985865684,4.16033376369202,3.69497360744293,1.31517439456545,1.39023624612799,2.089512999133,0.61734640922383,1.59227413454795,0,0,0,1.65700618028402,1.17263029990548,1.98068267607116,0.473489471170421,0.787056926989615,0.462801338662135,0.232533944750408,1.07309360559848,0,0.329119699826961,0.164167464079095,0.324275238183423,0,0.219550115291051,0.268412837520744,9.46304768538573,19.2431625149262,0.330418782983798,0.264450566663544,4.47905326123991,1.16118335930219,1.54640953586512,1.00841762311671,0.444756087689741,0.760902504450237,0.949058123089023,0.329397909448022,0.754005626400808,0.994782360205754,0.58489226135736,0,0.432276099749388,0.199141273254367,1.89667900953082,1.02823661348756,1.1270773567308,0.814605311381257,0.193952487167626,0.280543279561274,0.189709611372772,0.147610147979602,0,0,0,11.6791574001266,11.9900987019054,14.3911751926306,16.6345299538572,16.4000468631643,8.40265310878685,6.61701116136864,7.7824908852017,5.21666685057355,1.43768206527355,2.23284568601102,0,0,0.179397413521912,0,1.84753190166605,2.27389694124582,1.30371981153621,1.86719594352707,0.938760993154008,0.502518772325447,0.476087281772027,0.585400943573396,0.788175720530955,1.32878813789265,0.478364305972461,1.14704320301017,1.03610989119537,0.433947175744535,0,0,0,0,17.9816660786327,15.8235776899474,2.62295912602681,0.252470927204373,1.57754109708128,2.73307121007647,4.30846795465598,1.43381278771531,2.45078541490634,1.41538265394416,2.42886421004937,3.79932615284705,2.37172666767914,11.2462460747632,1.70328102249922,0.712262414669021,1.62886959353576,1.15479086080775,1.32745138339963,3.15614827001476,1.81394134178851,1.88605079755898,2.06711325016541,2.15204603560749,0.516856586336442,1.45413491791002,0.712994756769443,0.632073515871632,0,1.03135543248187,7.48967132658334,5.76195500900193,4.2688365648309,4.50107773566344,3.90148514013002,4.63758925765383,5.26556865926787,1.522324745573,0.704015124191131,0,0,0.16488625294148,0.322928853391811,0.72375509913787,1.19372344003136,0.492422699235184,0.582961673259701,19.284231409093,9.3978984438819,1.03193433981611,6.85219751267933,19.5903195284879,17.4968611482912,13.2691340459783,0.339956859987711,0.419854356970974,0.690999869022119,0.954670618015114,3.16335993581135,2.43983360552218,1.83609079397062,1.88179466413022,1.52853794622324,1.21377911746339,0.909188012978695,0.26175594198403,0.129614973291793,0,0,1.64468200648377,1.65458490457098,2.33341426012857,2.45403664607689,2.53434188236167,1.76035857968631,1.17183946359555,2.30690557736564,1.20792060413003,0.288030006257865,0,1.82452693761148,1.23253148597793,0.909445760844565,0.716106782669926,0.39736270956253,0.360586348559907,0.738447635872886,0.807731599585181,0.304827226619999,0.705783295957884,0.38983152295901,0.481059208201647,0.233753804363138,1.36038230169127,0.221985953374065,0,0,0.386379188064381,0.187682475451182,1.46521299413812,0.428736758158132,2.00628841614145,11.2950368523413,7.82552902062201,8.02053718815155,9.6237782112465,4.7955776383945,6.7985450765073,2.70009000092722,4.05289082901798,3.62513927187364,4.65984280576638,5.50072942196136,3.591223860609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| |||
|short_description=p1@Pcyt1b | |||
}} |
Revision as of 20:15, 14 September 2013
Short description: | p1@Pcyt1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pcyt1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:883 |
Association with transcript: | 0bp_to_ENSMUST00000045898, NM_211138, uc009tsw.1_5end |
EntrezGene: | Pcyt1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.63e-15 | 23 |
neuroblast (sensu Vertebrata) | 7.63e-15 | 23 |
neuron | 1.39e-13 | 33 |
neuronal stem cell | 1.39e-13 | 33 |
neuroblast | 1.39e-13 | 33 |
electrically signaling cell | 1.39e-13 | 33 |
electrically responsive cell | 7.48e-12 | 39 |
electrically active cell | 7.48e-12 | 39 |
ectodermal cell | 1.10e-08 | 44 |
neurectodermal cell | 1.10e-08 | 44 |
neural cell | 2.01e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.63e-22 | 64 |
neural plate | 1.63e-22 | 64 |
presumptive neural plate | 1.63e-22 | 64 |
central nervous system | 4.64e-22 | 73 |
nervous system | 3.54e-21 | 75 |
regional part of nervous system | 5.25e-21 | 54 |
neural tube | 5.15e-20 | 52 |
neural rod | 5.15e-20 | 52 |
future spinal cord | 5.15e-20 | 52 |
neural keel | 5.15e-20 | 52 |
ectoderm-derived structure | 1.48e-18 | 95 |
ectoderm | 1.48e-18 | 95 |
presumptive ectoderm | 1.48e-18 | 95 |
pre-chordal neural plate | 3.24e-18 | 49 |
ecto-epithelium | 4.48e-18 | 73 |
brain | 6.41e-17 | 47 |
future brain | 6.41e-17 | 47 |
regional part of brain | 2.42e-16 | 46 |
anterior neural tube | 4.78e-16 | 40 |
gray matter | 1.28e-15 | 34 |
regional part of forebrain | 1.91e-15 | 39 |
forebrain | 1.91e-15 | 39 |
future forebrain | 1.91e-15 | 39 |
brain grey matter | 8.81e-13 | 29 |
regional part of telencephalon | 8.81e-13 | 29 |
telencephalon | 8.81e-13 | 29 |
structure with developmental contribution from neural crest | 4.09e-12 | 92 |
cerebral cortex | 1.75e-08 | 21 |
cerebral hemisphere | 1.75e-08 | 21 |
pallium | 1.75e-08 | 21 |
tube | 3.99e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.