FFCP PHASE1:Mm9::chrX:96085958..96085977,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=94190|HGNC=|UniProt=|association_with_transcript=0bp_to_ENSMUST00000156634_5end|description=CAGE_peak_4_at_Ophn1_5end|id=chrX:96085958..96085977,-|ontology_enrichment_celltype=CL:0000117!2.16e-10!23;CL:0000337!2.16e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.66e-12,23;CL:0000337,4.66e-12,23;CL:0000540,9.06e-08,33;CL:0000047,9.06e-08,33;CL:0000031,9.06e-08,33;CL:0000404,9.06e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.47e-15!52;UBERON:0005068!3.47e-15!52;UBERON:0006241!3.47e-15!52;UBERON:0007135!3.47e-15!52;UBERON:0000033!1.75e-14!63;UBERON:0004121!5.57e-14!102;UBERON:0000924!5.57e-14!102;UBERON:0006601!5.57e-14!102;UBERON:0002346!6.64e-14!71;UBERON:0003075!6.64e-14!71;UBERON:0007284!6.64e-14!71;UBERON:0002020!1.15e-13!34;UBERON:0001017!2.37e-13!73;UBERON:0005743!2.37e-13!73;UBERON:0000955!8.58e-13!50;UBERON:0006238!8.58e-13!50;UBERON:0000073!1.04e-12!75;UBERON:0001016!1.04e-12!75;UBERON:0003056!1.04e-12!49;UBERON:0002616!3.63e-12!49;UBERON:0003080!7.90e-12!40;UBERON:0002780!1.43e-11!39;UBERON:0001890!1.43e-11!39;UBERON:0006240!1.43e-11!39;UBERON:0004111!1.75e-11!122;UBERON:0002791!9.72e-11!29;UBERON:0003528!9.72e-11!29;UBERON:0001893!9.72e-11!29;UBERON:0000025!4.68e-10!114;UBERON:0000468!9.92e-10!333;UBERON:0000922!4.20e-08!328;UBERON:0000956!8.02e-08!21;UBERON:0001869!8.02e-08!21;UBERON:0000203!8.02e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.58e-17,73;UBERON:0000073,5.63e-17,54;UBERON:0001049,7.33e-17,52;UBERON:0005068,7.33e-17,52;UBERON:0006241,7.33e-17,52;UBERON:0007135,7.33e-17,52;UBERON:0002346,1.73e-16,64;UBERON:0003075,1.73e-16,64;UBERON:0007284,1.73e-16,64;UBERON:0004121,1.11e-15,95;UBERON:0000924,1.11e-15,95;UBERON:0006601,1.11e-15,95;UBERON:0001017,3.77e-15,73;UBERON:0002020,5.27e-15,34;UBERON:0001016,4.30e-14,75;UBERON:0000955,5.26e-14,47;UBERON:0006238,5.26e-14,47;UBERON:0002616,2.74e-13,46;UBERON:0010314,4.95e-13,92;UBERON:0003056,6.00e-13,49;UBERON:0003080,1.26e-12,40;UBERON:0002780,2.47e-12,39;UBERON:0001890,2.47e-12,39;UBERON:0006240,2.47e-12,39;UBERON:0003528,1.11e-11,29;UBERON:0002791,1.11e-11,29;UBERON:0001893,1.11e-11,29;UBERON:0004111,1.46e-11,122;UBERON:0000025,5.22e-10,114;UBERON:0000956,2.30e-08,21;UBERON:0001869,2.30e-08,21;UBERON:0000203,2.30e-08,21|phase1_expression=2.08193501236232,0.348975407639361,0,2.11724947914781,2.50447864973174,0.16787927191189,1.16806320297763,0,0,0,0,0,0,0,0,0.202475267389826,0.699561878128147,0,0,0,1.44573593256819,0,0,0.799962113967033,0,0.57423196411502,0,0.215471232685889,0.380046838912748,0,0,0,0,0,1.44425809875637,0.664938581433969,1.02084678131185,0,0,0,0,0,0,0.125896817975577,0.405507724878058,1.10128051297009,0,0.218025156380447,1.09843091367236,0.388859798148567,0.279972843250725,0,0,0,0,0.257259436035947,0.85960031981627,1.03134418455488,3.64169629547276,4.7609188134483,3.1691570175309,0.338844532069132,0.889294796111139,1.3498495759221,0.988866362566974,2.1314403448383,0.898800331555214,1.92109152660777,3.42175720617976,2.8351247049655,2.73422449756797,3.42781181284564,3.09215957332259,2.81728838194394,2.30029130443767,1.83843757322004,0,2.93680877595932,3.07213066512487,2.63772575460388,1.73826522844578,4.16730696445408,1.95428099300967,2.25105044012672,2.29197371665215,2.94628585473668,3.84403538157578,6.15118171223492,0.37863096666592,0.755715601067855,2.6087803983151,0.860423876981386,0,0,0,0.448026887097336,0.983110940922263,0.340860645156116,0,0.35333957451034,1.12674735821344,0,0,0,1.08245520505607,0.506719730950197,0.505524445014783,0.5709193985953,1.8125651855302,1.33597925158342,0.693941307064543,0.608930956624282,0.691846491768175,0.452167921657868,1.05829836422134,0.502666365318702,0.494389935468748,1.59059292611903,0,1.13236794963186,0.662524555381181,0.484875253135222,0,2.34224637609238,2.93225389538837,0.510914110417183,0.11981512450592,0,0,1.9472783122627,1.83000241127451,4.02093926761166,3.12883776346098,2.81287003063364,1.87009240103604,2.59586020908412,0.509196819251581,0.995255764880744,0.252722758433675,3.78795340595653,0.780722657776222,1.37941262660084,1.62055916824814,2.26057226753573,1.42876648217788,1.40925092313335,0.843315521037559,1.81092359517311,0.431135985865684,1.32374256117473,1.58356011747554,0.657587197282725,1.39023624612799,1.74126083261083,1.85203922767149,0.796137067273973,0,0,0,1.44988040774851,0.938104239924385,1.2604344302271,0.473489471170421,2.16440654922144,1.07986979021165,1.16266972375204,1.07309360559848,1.16765342367169,1.81015834904829,1.47750717671186,1.4592385718254,0.730999937126662,1.3173006917463,1.20785776884335,3.78521907415429,2.26390147234426,3.63460661282178,0.793351699990633,1.49301775374664,1.16118335930219,0.902072229254653,1.00841762311671,0,0.570676878337677,1.89811624617805,1.15289268306808,1.00534083520108,0.397912944082302,0.38992817423824,0,1.29682829924817,2.58883655230677,0.758671603812327,1.14248512609729,1.1270773567308,1.01825663922657,1.93952487167626,0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| ||
|EntrezGene=94190 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000156634_5end | |||
|description=CAGE_peak_4_at_Ophn1_5end | |||
|id=chrX:96085958..96085977,- | |||
|ontology_enrichment_celltype=CL:0000117!2.16e-10!23;CL:0000337!2.16e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.66e-12,23;CL:0000337,4.66e-12,23;CL:0000540,9.06e-08,33;CL:0000047,9.06e-08,33;CL:0000031,9.06e-08,33;CL:0000404,9.06e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.47e-15!52;UBERON:0005068!3.47e-15!52;UBERON:0006241!3.47e-15!52;UBERON:0007135!3.47e-15!52;UBERON:0000033!1.75e-14!63;UBERON:0004121!5.57e-14!102;UBERON:0000924!5.57e-14!102;UBERON:0006601!5.57e-14!102;UBERON:0002346!6.64e-14!71;UBERON:0003075!6.64e-14!71;UBERON:0007284!6.64e-14!71;UBERON:0002020!1.15e-13!34;UBERON:0001017!2.37e-13!73;UBERON:0005743!2.37e-13!73;UBERON:0000955!8.58e-13!50;UBERON:0006238!8.58e-13!50;UBERON:0000073!1.04e-12!75;UBERON:0001016!1.04e-12!75;UBERON:0003056!1.04e-12!49;UBERON:0002616!3.63e-12!49;UBERON:0003080!7.90e-12!40;UBERON:0002780!1.43e-11!39;UBERON:0001890!1.43e-11!39;UBERON:0006240!1.43e-11!39;UBERON:0004111!1.75e-11!122;UBERON:0002791!9.72e-11!29;UBERON:0003528!9.72e-11!29;UBERON:0001893!9.72e-11!29;UBERON:0000025!4.68e-10!114;UBERON:0000468!9.92e-10!333;UBERON:0000922!4.20e-08!328;UBERON:0000956!8.02e-08!21;UBERON:0001869!8.02e-08!21;UBERON:0000203!8.02e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,2.58e-17,73;UBERON:0000073,5.63e-17,54;UBERON:0001049,7.33e-17,52;UBERON:0005068,7.33e-17,52;UBERON:0006241,7.33e-17,52;UBERON:0007135,7.33e-17,52;UBERON:0002346,1.73e-16,64;UBERON:0003075,1.73e-16,64;UBERON:0007284,1.73e-16,64;UBERON:0004121,1.11e-15,95;UBERON:0000924,1.11e-15,95;UBERON:0006601,1.11e-15,95;UBERON:0001017,3.77e-15,73;UBERON:0002020,5.27e-15,34;UBERON:0001016,4.30e-14,75;UBERON:0000955,5.26e-14,47;UBERON:0006238,5.26e-14,47;UBERON:0002616,2.74e-13,46;UBERON:0010314,4.95e-13,92;UBERON:0003056,6.00e-13,49;UBERON:0003080,1.26e-12,40;UBERON:0002780,2.47e-12,39;UBERON:0001890,2.47e-12,39;UBERON:0006240,2.47e-12,39;UBERON:0003528,1.11e-11,29;UBERON:0002791,1.11e-11,29;UBERON:0001893,1.11e-11,29;UBERON:0004111,1.46e-11,122;UBERON:0000025,5.22e-10,114;UBERON:0000956,2.30e-08,21;UBERON:0001869,2.30e-08,21;UBERON:0000203,2.30e-08,21 | |||
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| |||
|short_description=p4@Ophn1 | |||
}} |
Revision as of 20:18, 14 September 2013
Short description: | p4@Ophn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ophn1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000156634_5end |
EntrezGene: | Ophn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.66e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.66e-12 | 23 |
neuron | 9.06e-08 | 33 |
neuronal stem cell | 9.06e-08 | 33 |
neuroblast | 9.06e-08 | 33 |
electrically signaling cell | 9.06e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 2.58e-17 | 73 |
regional part of nervous system | 5.63e-17 | 54 |
neural tube | 7.33e-17 | 52 |
neural rod | 7.33e-17 | 52 |
future spinal cord | 7.33e-17 | 52 |
neural keel | 7.33e-17 | 52 |
neurectoderm | 1.73e-16 | 64 |
neural plate | 1.73e-16 | 64 |
presumptive neural plate | 1.73e-16 | 64 |
ectoderm-derived structure | 1.11e-15 | 95 |
ectoderm | 1.11e-15 | 95 |
presumptive ectoderm | 1.11e-15 | 95 |
central nervous system | 3.77e-15 | 73 |
gray matter | 5.27e-15 | 34 |
nervous system | 4.30e-14 | 75 |
brain | 5.26e-14 | 47 |
future brain | 5.26e-14 | 47 |
regional part of brain | 2.74e-13 | 46 |
structure with developmental contribution from neural crest | 4.95e-13 | 92 |
pre-chordal neural plate | 6.00e-13 | 49 |
anterior neural tube | 1.26e-12 | 40 |
regional part of forebrain | 2.47e-12 | 39 |
forebrain | 2.47e-12 | 39 |
future forebrain | 2.47e-12 | 39 |
brain grey matter | 1.11e-11 | 29 |
regional part of telencephalon | 1.11e-11 | 29 |
telencephalon | 1.11e-11 | 29 |
anatomical conduit | 1.46e-11 | 122 |
tube | 5.22e-10 | 114 |
cerebral cortex | 2.30e-08 | 21 |
cerebral hemisphere | 2.30e-08 | 21 |
pallium | 2.30e-08 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.