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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007848
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0000344,UBERON:0005156,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0000344,UBERON:0005156,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
Line 41: Line 42:
|is_a=DOID:3603;;EFO:0002091;;FF:0000210;;FF:0104883;;UBERON:0000344
|is_a=DOID:3603;;EFO:0002091;;FF:0000210;;FF:0104883;;UBERON:0000344
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11873
|name=mucinous cystadenocarcinoma cell line:MCAS
|name=mucinous cystadenocarcinoma cell line:MCAS
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=ZEB1:2.0593910752;SNAI1..3:1.81259568322;FOXQ1:1.60679696463;VSX1,2:1.47795793875;ONECUT1,2:1.34228291945;NKX3-1:1.19526481102;POU2F1..3:1.18907525317;bHLH_family:1.08417602573;POU5F1:1.04212941887;FOXD3:0.957304123526;TFDP1:0.936544709336;TBX4,5:0.919048054413;HOX{A6,A7,B6,B7}:0.904120311951;PPARG:0.859749799989;NKX2-3_NKX2-5:0.827559712296;LMO2:0.792132082414;PITX1..3:0.770154135063;ZNF148:0.765630936825;PAX8:0.763194927888;ELK1,4_GABP{A,B1}:0.745601413499;CRX:0.744081006355;LEF1_TCF7_TCF7L1,2:0.706715174114;TEAD1:0.68023292746;ADNP_IRX_SIX_ZHX:0.664920170257;FOX{I1,J2}:0.664184124423;TFAP2{A,C}:0.637933233796;PBX1:0.62325544939;FOXA2:0.60958743568;E2F1..5:0.608799407064;MYB:0.571294716387;FOS_FOS{B,L1}_JUN{B,D}:0.567182222604;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543350124947;BACH2:0.51556105086;FOXM1:0.514240132036;BREu{core}:0.493078468155;OCT4_SOX2{dimer}:0.487784243664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.461518429241;POU1F1:0.46016173568;TFAP2B:0.454014091679;HOX{A5,B5}:0.43608327154;NKX2-2,8:0.417640609624;TEF:0.396056953646;MYOD1:0.391024640973;NANOG:0.376427160393;NR5A1,2:0.375258676534;SOX{8,9,10}:0.340073050912;FOSL2:0.312494470572;CDC5L:0.310838275319;POU6F1:0.299032748195;AIRE:0.287861348299;XCPE1{core}:0.267648269691;NFE2:0.236322302752;FOX{F1,F2,J1}:0.221175003098;STAT5{A,B}:0.217834501689;EN1,2:0.207719154941;GATA6:0.204939814723;FOXN1:0.204478410388;CEBPA,B_DDIT3:0.183706162262;TFCP2:0.175957007305;PAX2:0.111608949669;ELF1,2,4:0.105844172799;SP1:0.0851814080126;HLF:0.0848668479018;IKZF1:0.0834848959123;EGR1..3:0.0726434565625;LHX3,4:0.0653251708911;ARID5B:0.0532486574921;ATF4:0.0440957330143;NFIL3:0.0396674910739;HNF1A:-0.0199256051696;MTE{core}:-0.0433995655648;NFY{A,B,C}:-0.0445352369435;TAL1_TCF{3,4,12}:-0.0506242969998;SOX2:-0.0542127279778;NR6A1:-0.0550474561418;PRRX1,2:-0.055244265631;TBP:-0.0562052906928;CUX2:-0.0818939561469;GLI1..3:-0.0828876415018;MED-1{core}:-0.0903189956638;NFKB1_REL_RELA:-0.0903390888825;HES1:-0.157163710474;HNF4A_NR2F1,2:-0.181041729329;ZFP161:-0.186986668229;RORA:-0.189906613308;ATF5_CREB3:-0.19365895794;ATF6:-0.194939724025;HIC1:-0.198899212238;AHR_ARNT_ARNT2:-0.198965007062;MTF1:-0.202348136637;GTF2A1,2:-0.210863286307;ZNF143:-0.217471724087;ESR1:-0.222699412102;ALX1:-0.223164332694;TLX2:-0.239195677664;MEF2{A,B,C,D}:-0.246946488985;SPI1:-0.259413911815;ETS1,2:-0.263700153023;POU3F1..4:-0.269503823941;ZBTB6:-0.27467985114;SOX17:-0.288295825816;RREB1:-0.293771340488;ZNF384:-0.303494879283;TP53:-0.312898377428;FOXP1:-0.324824911234;BPTF:-0.325244407787;MAZ:-0.336225783961;NKX3-2:-0.33910377547;JUN:-0.342784538359;TOPORS:-0.35017734082;RFX2..5_RFXANK_RFXAP:-0.350467158102;SOX5:-0.358805678031;NKX2-1,4:-0.359635605554;TLX1..3_NFIC{dimer}:-0.363565994552;NRF1:-0.372712832738;IRF7:-0.374796356788;PAX4:-0.377131485543;CREB1:-0.389590198036;SPIB:-0.390484111273;NFE2L2:-0.391836446441;YY1:-0.399986460994;PRDM1:-0.400581615387;RUNX1..3:-0.404840755063;PAX5:-0.419597620845;AR:-0.448568809894;PATZ1:-0.45295497214;GFI1B:-0.458811146682;HMGA1,2:-0.460876361209;EP300:-0.467626252192;ZBTB16:-0.477213072751;FOXO1,3,4:-0.482180783328;FOXL1:-0.48402400728;GFI1:-0.503172878613;MZF1:-0.529522108886;PAX3,7:-0.530862673345;GTF2I:-0.552740974369;ATF2:-0.55970977888;IRF1,2:-0.580296174595;HIF1A:-0.581020453874;UFEwm:-0.605704498885;NR1H4:-0.620191539459;NKX6-1,2:-0.632220068192;EVI1:-0.632430182034;KLF4:-0.640631476024;PAX6:-0.643553822926;FOX{D1,D2}:-0.656496168637;REST:-0.661997215677;RXRA_VDR{dimer}:-0.66825130179;NR3C1:-0.682062372349;HBP1_HMGB_SSRP1_UBTF:-0.686459964645;DMAP1_NCOR{1,2}_SMARC:-0.702086476249;NFATC1..3:-0.707755709085;DBP:-0.713929656802;NFE2L1:-0.71694806536;STAT2,4,6:-0.726388782293;XBP1:-0.735493374878;ZNF423:-0.738098168385;ZIC1..3:-0.755270540621;EBF1:-0.758445278247;SREBF1,2:-0.778791790069;HMX1:-0.784265792138;RFX1:-0.784670396696;PAX1,9:-0.794308636141;PDX1:-0.804306384886;IKZF2:-0.805071808676;SRF:-0.826282610016;ALX4:-0.830178181791;NHLH1,2:-0.835148069692;SPZ1:-0.841895478535;CDX1,2,4:-0.849158923709;ESRRA:-0.890848764952;HSF1,2:-0.89404241012;TFAP4:-0.910954066494;HAND1,2:-0.924385997961;MYFfamily:-0.940787040645;MYBL2:-0.944533386104;TGIF1:-0.957870319195;HOX{A4,D4}:-0.973848066778;MAFB:-0.995971307664;HOXA9_MEIS1:-0.99662275528;FOXP3:-1.01096934804;RBPJ:-1.03519245065;GATA4:-1.07315115387;SMAD1..7,9:-1.20332283307;GCM1,2:-1.20964455507;NFIX:-1.32691292027;T:-1.37370277607;ZNF238:-1.37719592133;GZF1:-1.38138346984;RXR{A,B,G}:-1.4842769326;NANOG{mouse}:-1.62439593869;STAT1,3:-2.46182513324
|top_motifs=ZEB1:2.0593910752;SNAI1..3:1.81259568322;FOXQ1:1.60679696463;VSX1,2:1.47795793875;ONECUT1,2:1.34228291945;NKX3-1:1.19526481102;POU2F1..3:1.18907525317;bHLH_family:1.08417602573;POU5F1:1.04212941887;FOXD3:0.957304123526;TFDP1:0.936544709336;TBX4,5:0.919048054413;HOX{A6,A7,B6,B7}:0.904120311951;PPARG:0.859749799989;NKX2-3_NKX2-5:0.827559712296;LMO2:0.792132082414;PITX1..3:0.770154135063;ZNF148:0.765630936825;PAX8:0.763194927888;ELK1,4_GABP{A,B1}:0.745601413499;CRX:0.744081006355;LEF1_TCF7_TCF7L1,2:0.706715174114;TEAD1:0.68023292746;ADNP_IRX_SIX_ZHX:0.664920170257;FOX{I1,J2}:0.664184124423;TFAP2{A,C}:0.637933233796;PBX1:0.62325544939;FOXA2:0.60958743568;E2F1..5:0.608799407064;MYB:0.571294716387;FOS_FOS{B,L1}_JUN{B,D}:0.567182222604;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543350124947;BACH2:0.51556105086;FOXM1:0.514240132036;BREu{core}:0.493078468155;OCT4_SOX2{dimer}:0.487784243664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.461518429241;POU1F1:0.46016173568;TFAP2B:0.454014091679;HOX{A5,B5}:0.43608327154;NKX2-2,8:0.417640609624;TEF:0.396056953646;MYOD1:0.391024640973;NANOG:0.376427160393;NR5A1,2:0.375258676534;SOX{8,9,10}:0.340073050912;FOSL2:0.312494470572;CDC5L:0.310838275319;POU6F1:0.299032748195;AIRE:0.287861348299;XCPE1{core}:0.267648269691;NFE2:0.236322302752;FOX{F1,F2,J1}:0.221175003098;STAT5{A,B}:0.217834501689;EN1,2:0.207719154941;GATA6:0.204939814723;FOXN1:0.204478410388;CEBPA,B_DDIT3:0.183706162262;TFCP2:0.175957007305;PAX2:0.111608949669;ELF1,2,4:0.105844172799;SP1:0.0851814080126;HLF:0.0848668479018;IKZF1:0.0834848959123;EGR1..3:0.0726434565625;LHX3,4:0.0653251708911;ARID5B:0.0532486574921;ATF4:0.0440957330143;NFIL3:0.0396674910739;HNF1A:-0.0199256051696;MTE{core}:-0.0433995655648;NFY{A,B,C}:-0.0445352369435;TAL1_TCF{3,4,12}:-0.0506242969998;SOX2:-0.0542127279778;NR6A1:-0.0550474561418;PRRX1,2:-0.055244265631;TBP:-0.0562052906928;CUX2:-0.0818939561469;GLI1..3:-0.0828876415018;MED-1{core}:-0.0903189956638;NFKB1_REL_RELA:-0.0903390888825;HES1:-0.157163710474;HNF4A_NR2F1,2:-0.181041729329;ZFP161:-0.186986668229;RORA:-0.189906613308;ATF5_CREB3:-0.19365895794;ATF6:-0.194939724025;HIC1:-0.198899212238;AHR_ARNT_ARNT2:-0.198965007062;MTF1:-0.202348136637;GTF2A1,2:-0.210863286307;ZNF143:-0.217471724087;ESR1:-0.222699412102;ALX1:-0.223164332694;TLX2:-0.239195677664;MEF2{A,B,C,D}:-0.246946488985;SPI1:-0.259413911815;ETS1,2:-0.263700153023;POU3F1..4:-0.269503823941;ZBTB6:-0.27467985114;SOX17:-0.288295825816;RREB1:-0.293771340488;ZNF384:-0.303494879283;TP53:-0.312898377428;FOXP1:-0.324824911234;BPTF:-0.325244407787;MAZ:-0.336225783961;NKX3-2:-0.33910377547;JUN:-0.342784538359;TOPORS:-0.35017734082;RFX2..5_RFXANK_RFXAP:-0.350467158102;SOX5:-0.358805678031;NKX2-1,4:-0.359635605554;TLX1..3_NFIC{dimer}:-0.363565994552;NRF1:-0.372712832738;IRF7:-0.374796356788;PAX4:-0.377131485543;CREB1:-0.389590198036;SPIB:-0.390484111273;NFE2L2:-0.391836446441;YY1:-0.399986460994;PRDM1:-0.400581615387;RUNX1..3:-0.404840755063;PAX5:-0.419597620845;AR:-0.448568809894;PATZ1:-0.45295497214;GFI1B:-0.458811146682;HMGA1,2:-0.460876361209;EP300:-0.467626252192;ZBTB16:-0.477213072751;FOXO1,3,4:-0.482180783328;FOXL1:-0.48402400728;GFI1:-0.503172878613;MZF1:-0.529522108886;PAX3,7:-0.530862673345;GTF2I:-0.552740974369;ATF2:-0.55970977888;IRF1,2:-0.580296174595;HIF1A:-0.581020453874;UFEwm:-0.605704498885;NR1H4:-0.620191539459;NKX6-1,2:-0.632220068192;EVI1:-0.632430182034;KLF4:-0.640631476024;PAX6:-0.643553822926;FOX{D1,D2}:-0.656496168637;REST:-0.661997215677;RXRA_VDR{dimer}:-0.66825130179;NR3C1:-0.682062372349;HBP1_HMGB_SSRP1_UBTF:-0.686459964645;DMAP1_NCOR{1,2}_SMARC:-0.702086476249;NFATC1..3:-0.707755709085;DBP:-0.713929656802;NFE2L1:-0.71694806536;STAT2,4,6:-0.726388782293;XBP1:-0.735493374878;ZNF423:-0.738098168385;ZIC1..3:-0.755270540621;EBF1:-0.758445278247;SREBF1,2:-0.778791790069;HMX1:-0.784265792138;RFX1:-0.784670396696;PAX1,9:-0.794308636141;PDX1:-0.804306384886;IKZF2:-0.805071808676;SRF:-0.826282610016;ALX4:-0.830178181791;NHLH1,2:-0.835148069692;SPZ1:-0.841895478535;CDX1,2,4:-0.849158923709;ESRRA:-0.890848764952;HSF1,2:-0.89404241012;TFAP4:-0.910954066494;HAND1,2:-0.924385997961;MYFfamily:-0.940787040645;MYBL2:-0.944533386104;TGIF1:-0.957870319195;HOX{A4,D4}:-0.973848066778;MAFB:-0.995971307664;HOXA9_MEIS1:-0.99662275528;FOXP3:-1.01096934804;RBPJ:-1.03519245065;GATA4:-1.07315115387;SMAD1..7,9:-1.20332283307;GCM1,2:-1.20964455507;NFIX:-1.32691292027;T:-1.37370277607;ZNF238:-1.37719592133;GZF1:-1.38138346984;RXR{A,B,G}:-1.4842769326;NANOG{mouse}:-1.62439593869;STAT1,3:-2.46182513324
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007848
|accession_numbers=DRX007954;DRR008826;DRZ000251;DRZ001636;CAGE
|library_id=CNhs11873
}}
}}

Revision as of 19:45, 16 October 2013


Name:mucinous cystadenocarcinoma cell line:MCAS
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:cell lines
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexfemale
ageunknown
cell typeunclassifiable
cell lineMCAS
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007848
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.02
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.316
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.063
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0707
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0283
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.574
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.243
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.345
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0051
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11873

Jaspar motifP-value
MA0002.20.558
MA0003.10.978
MA0004.10.0619
MA0006.10.22
MA0007.10.94
MA0009.10.219
MA0014.10.156
MA0017.10.435
MA0018.20.337
MA0019.10.349
MA0024.10.001
MA0025.10.0218
MA0027.10.898
MA0028.10.0115
MA0029.10.105
MA0030.10.0322
MA0031.10.187
MA0035.27.0002e-5
MA0038.10.831
MA0039.20.0195
MA0040.10.756
MA0041.10.304
MA0042.10.934
MA0043.10.798
MA0046.10.133
MA0047.20.0288
MA0048.10.622
MA0050.10.0253
MA0051.10.61
MA0052.10.466
MA0055.10.00326
MA0057.10.22
MA0058.10.0439
MA0059.10.2
MA0060.10.522
MA0061.10.428
MA0062.20.00809
MA0065.20.319
MA0066.10.656
MA0067.10.656
MA0068.10.41
MA0069.10.661
MA0070.10.812
MA0071.10.524
MA0072.10.799
MA0073.10.728
MA0074.10.391
MA0076.10.0789
MA0077.10.916
MA0078.10.533
MA0079.20.706
MA0080.20.185
MA0081.10.472
MA0083.10.238
MA0084.10.297
MA0087.10.379
MA0088.10.313
MA0090.16.307e-4
MA0091.10.0283
MA0092.10.123
MA0093.10.0696
MA0099.21.6142e-17
MA0100.10.851
MA0101.10.87
MA0102.20.979
MA0103.11.33447e-12
MA0104.20.285
MA0105.10.0122
MA0106.10.898
MA0107.10.992
MA0108.20.921
MA0111.10.842
MA0112.20.901
MA0113.10.707
MA0114.10.0854
MA0115.10.202
MA0116.10.0303
MA0117.10.611
MA0119.10.618
MA0122.10.565
MA0124.10.881
MA0125.10.187
MA0131.10.891
MA0135.10.284
MA0136.10.942
MA0137.20.11
MA0138.20.0137
MA0139.10.883
MA0140.10.0464
MA0141.10.912
MA0142.10.342
MA0143.10.625
MA0144.10.488
MA0145.10.27
MA0146.10.168
MA0147.10.187
MA0148.10.00461
MA0149.10.144
MA0150.10.0366
MA0152.10.228
MA0153.10.0544
MA0154.10.043
MA0155.10.178
MA0156.10.384
MA0157.10.695
MA0159.10.241
MA0160.10.106
MA0162.10.836
MA0163.10.011
MA0164.10.685
MA0258.10.79
MA0259.10.737



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11873

Novel motifP-value
10.581
100.956
1000.885
1010.0491
1020.403
1030.391
1040.524
1050.063
1060.0745
1070.104
1080.388
1090.00427
110.62
1100.756
1110.465
1120.385
1130.0373
1140.65
1150.813
1160.25
1170.621
1180.568
1190.582
120.673
1200.602
1210.947
1220.015
1230.62
1240.0892
1250.949
1260.385
1270.278
1280.918
1290.592
130.0757
1300.415
1310.512
1320.857
1330.12
1340.0987
1350.0274
1360.112
1370.332
1380.789
1390.665
140.967
1400.794
1410.246
1420.671
1430.22
1440.0383
1450.73
1460.492
1470.0562
1480.138
1490.207
150.179
1500.256
1510.816
1520.0254
1530.628
1540.96
1550.773
1560.225
1570.685
1580.672
1590.767
160.101
1600.949
1610.798
1620.99
1630.159
1640.439
1650.585
1660.122
1670.847
1680.478
1690.177
170.231
180.625
190.261
20.691
200.13
210.503
220.912
230.842
240.681
250.856
260.148
270.723
280.35
290.992
30.538
300.492
310.472
320.00728
330.0924
340.644
350.105
360.591
370.821
380.311
390.617
40.285
400.498
410.129
420.816
430.787
440.412
450.479
460.87
470.829
480.829
490.664
50.668
500.14
510.885
520.541
530.386
540.846
550.536
560.937
570.365
580.829
590.708
60.0255
600.19
610.189
620.649
630.117
640.973
650.562
660.0479
670.569
680.03
690.047
70.552
700.862
710.287
720.0556
730.0108
740.367
750.412
760.685
770.389
780.08
790.00327
80.958
800.556
810.0252
820.00638
830.253
840.465
850.361
860.549
870.0254
880.413
890.773
90.62
900.978
910.108
920.804
930.392
940.46
950.236
960.227
970.964
980.341
990.397



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11873


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3111 (cystadenocarcinoma)
3603 (mucinous cystadenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0000344 (mucosa)
0005156 (reproductive structure)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100977 (ovary cell line sample)
0100811 (ovary cancer cell line sample)
0104883 (cystadenocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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