FFCP PHASE1:Hg19::chr1:151043070..151043110,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126626 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28441 | |||
|TSSclassifier=strong | |||
|UniProt=Q5SZG2,Q8TAK5 | |||
|association_with_transcript=0bp_to_ENST00000368917,ENST00000368918,NM_144618,uc001ewr.2,uc001ews.2,uc010pcp.1_5end | |||
|description=CAGE_peak_3_at_GABPB2_5end | |||
|id=chr1:151043070..151043110,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.50e-22!115;UBERON:0001049!2.91e-15!57;UBERON:0005068!2.91e-15!57;UBERON:0006241!2.91e-15!57;UBERON:0007135!2.91e-15!57;UBERON:0002616!7.28e-13!59;UBERON:0003080!1.04e-10!42;UBERON:0002780!2.03e-10!41;UBERON:0001890!2.03e-10!41;UBERON:0006240!2.03e-10!41;UBERON:0000955!2.88e-10!69;UBERON:0006238!2.88e-10!69;UBERON:0003075!4.46e-10!86;UBERON:0007284!4.46e-10!86;UBERON:0005743!3.19e-09!86;UBERON:0001017!3.20e-09!82;UBERON:0002346!7.14e-09!90;UBERON:0000073!2.88e-08!94;UBERON:0001016!2.88e-08!94;UBERON:0002020!1.43e-07!34;UBERON:0003528!1.43e-07!34;UBERON:0001893!2.03e-07!34;UBERON:0000153!2.49e-07!129;UBERON:0007811!2.49e-07!129;UBERON:0002791!3.65e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.53e-10;53!UBERON:0002616;1.53e-10;53!UBERON:0002780;2.44e-10;41!UBERON:0001890;2.44e-10;41!UBERON:0007023;3.52e-08;114!UBERON:0003528;1.44e-07;34!UBERON:0002020;1.44e-07;34!UBERON:0001893;2.95e-07;34!UBERON:0002791;6.01e-07;32!UBERON:0001869;6.10e-07;32!UBERON:0001443;6.11e-07;11!UBERON:0001894;9.72e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.40e-29,114;UBERON:0001049,3.43e-20,56;UBERON:0005068,3.43e-20,56;UBERON:0006241,3.43e-20,56;UBERON:0007135,3.43e-20,56;UBERON:0000073,2.21e-18,53;UBERON:0002616,2.21e-18,53;UBERON:0003075,2.20e-14,82;UBERON:0007284,2.20e-14,82;UBERON:0002780,4.96e-14,41;UBERON:0001890,4.96e-14,41;UBERON:0003080,4.96e-14,41;UBERON:0006240,4.96e-14,41;UBERON:0002346,6.05e-13,86;UBERON:0000955,1.80e-12,68;UBERON:0006238,1.80e-12,68;UBERON:0001017,8.58e-12,81;UBERON:0010371,1.56e-11,104;UBERON:0010314,2.92e-11,132;UBERON:0001016,2.71e-10,89;UBERON:0003528,7.78e-10,34;UBERON:0002020,7.78e-10,34;UBERON:0001893,1.29e-09,34;UBERON:0002791,1.64e-08,32;UBERON:0001869,3.18e-08,32;UBERON:0003056,1.62e-07,61;UBERON:0003076,1.65e-07,15;UBERON:0003057,1.65e-07,15;UBERON:0001443,1.67e-07,11;UBERON:0000025,1.87e-07,192;UBERON:0004111,3.85e-07,240;UBERON:0002619,6.64e-07,22;UBERON:0001894,9.89e-07,7;UBERON:0006222,9.89e-07,7 | |||
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| |||
|short_description=p3@GABPB2 | |||
}} |
Revision as of 20:47, 10 January 2014
Short description: | p3@GABPB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GABPB2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368917, ENST00000368918, NM_144618, uc001ewr.2, uc001ews.2, uc010pcp.1_5end |
EntrezGene: | GABPB2 |
HGNC: | 28441 |
UniProt: | Q5SZG2Q8TAK5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 9.40e-29 | 114 |
neural tube | 3.43e-20 | 56 |
neural rod | 3.43e-20 | 56 |
future spinal cord | 3.43e-20 | 56 |
neural keel | 3.43e-20 | 56 |
regional part of nervous system | 2.21e-18 | 53 |
regional part of brain | 2.21e-18 | 53 |
neural plate | 2.20e-14 | 82 |
presumptive neural plate | 2.20e-14 | 82 |
regional part of forebrain | 4.96e-14 | 41 |
forebrain | 4.96e-14 | 41 |
anterior neural tube | 4.96e-14 | 41 |
future forebrain | 4.96e-14 | 41 |
neurectoderm | 6.05e-13 | 86 |
brain | 1.80e-12 | 68 |
future brain | 1.80e-12 | 68 |
central nervous system | 8.58e-12 | 81 |
ecto-epithelium | 1.56e-11 | 104 |
structure with developmental contribution from neural crest | 2.92e-11 | 132 |
nervous system | 2.71e-10 | 89 |
brain grey matter | 7.78e-10 | 34 |
gray matter | 7.78e-10 | 34 |
telencephalon | 1.29e-09 | 34 |
regional part of telencephalon | 1.64e-08 | 32 |
cerebral hemisphere | 3.18e-08 | 32 |
pre-chordal neural plate | 1.62e-07 | 61 |
posterior neural tube | 1.65e-07 | 15 |
chordal neural plate | 1.65e-07 | 15 |
chest | 1.67e-07 | 11 |
tube | 1.87e-07 | 192 |
anatomical conduit | 3.85e-07 | 240 |
regional part of cerebral cortex | 6.64e-07 | 22 |
diencephalon | 9.89e-07 | 7 |
future diencephalon | 9.89e-07 | 7 |