FFCP PHASE1:Hg19::chr15:66858298..66858341,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=197021 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15583 | |||
|TSSclassifier=strong | |||
|UniProt=B3KQY0 | |||
|association_with_transcript=0bp_to_ENST00000537670,uc002aqd.3,uc010bhw.2_5end | |||
|coexpression_cluster_id=C3504 | |||
|description=CAGE_peak_1_at_LCTL_5end | |||
|id=chr15:66858298..66858341,- | |||
|ontology_enrichment_celltype=CL:0000055!5.37e-38!180;CL:0000393!9.66e-16!60;CL:0000211!9.66e-16!60;CL:0000183!7.69e-15!59;CL:0000187!6.74e-13!54;CL:0002319!1.42e-12!25;CL:0000680!1.65e-11!57;CL:0000056!1.65e-11!57;CL:0000355!1.65e-11!57;CL:0000057!1.74e-11!75;CL:0000133!2.62e-11!59;CL:0000192!9.08e-11!42;CL:0000514!9.08e-11!42;CL:0000243!9.49e-10!15;CL:0000125!9.49e-10!15;CL:0000030!9.49e-10!15;CL:0000339!9.49e-10!15;CL:0000221!2.70e-09!71;CL:0000128!3.45e-08!7;CL:0000126!3.45e-08!7;CL:0000127!3.45e-08!7;CL:0002453!3.45e-08!7;CL:0000095!3.89e-08!17;CL:0000123!3.89e-08!17;CL:0000333!2.39e-07!41;CL:0002539!5.48e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0002319;4.46e-13;25!CL:0000128;4.67e-13;7!CL:0000126;4.67e-13;7!CL:0000127;4.67e-13;7!CL:0000243;7.37e-12;15!CL:0000125;7.37e-12;15!CL:0000095;2.94e-10;17!CL:0002539;2.07e-09;10!CL:0002322;7.66e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.77e-13,25;CL:0000128,5.21e-13,7;CL:0000126,5.21e-13,7;CL:0000127,5.21e-13,7;CL:0002453,5.21e-13,7;CL:0000243,5.74e-12,15;CL:0000125,5.74e-12,15;CL:0000030,5.74e-12,15;CL:0000339,5.74e-12,15;CL:0000133,1.02e-11,59;CL:0000095,2.36e-10,17;CL:0000123,2.36e-10,17;CL:0002539,1.31e-09,10;CL:0000221,2.40e-08,72;CL:0002322,4.38e-08,5;CL:0000393,6.17e-08,61;CL:0000211,6.17e-08,61;CL:0000333,1.07e-07,41;CL:0000192,5.84e-07,43;CL:0000514,5.84e-07,43;CL:0000187,8.97e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000339;7.37e-12;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.86e-18!94;UBERON:0001016!6.86e-18!94;UBERON:0005743!9.34e-18!86;UBERON:0001017!6.77e-16!82;UBERON:0000914!1.87e-14!83;UBERON:0002329!1.87e-14!83;UBERON:0003077!1.87e-14!83;UBERON:0003059!1.87e-14!83;UBERON:0007282!1.87e-14!83;UBERON:0009618!1.87e-14!83;UBERON:0007285!1.87e-14!83;UBERON:0004121!7.85e-14!169;UBERON:0000475!5.36e-13!365;UBERON:0000924!6.81e-13!173;UBERON:0006601!6.81e-13!173;UBERON:0000033!1.02e-12!123;UBERON:0004290!1.16e-11!70;UBERON:0000153!1.19e-11!129;UBERON:0007811!1.19e-11!129;UBERON:0000955!1.78e-11!69;UBERON:0006238!1.78e-11!69;UBERON:0003075!3.15e-11!86;UBERON:0007284!3.15e-11!86;UBERON:0001134!1.21e-10!61;UBERON:0002036!1.21e-10!61;UBERON:0003082!1.21e-10!61;UBERON:0000119!1.29e-10!312;UBERON:0002616!2.43e-10!59;UBERON:0000483!5.10e-10!309;UBERON:0002346!5.11e-10!90;UBERON:0001049!5.29e-10!57;UBERON:0005068!5.29e-10!57;UBERON:0006241!5.29e-10!57;UBERON:0007135!5.29e-10!57;UBERON:0002385!6.80e-10!63;UBERON:0001015!6.80e-10!63;UBERON:0000383!6.80e-10!63;UBERON:0000486!3.38e-09!82;UBERON:0003056!7.44e-09!61;UBERON:0005256!1.87e-08!143;UBERON:0000025!8.02e-08!194;UBERON:0002020!9.18e-08!34;UBERON:0003528!9.18e-08!34;UBERON:0001893!1.22e-07!34;UBERON:0002791!2.56e-07!33;UBERON:0007625!2.80e-07!11;UBERON:0001135!4.55e-07!15;UBERON:0004237!5.48e-07!10;UBERON:0004695!5.48e-07!10;UBERON:0002111!5.48e-07!10;UBERON:0004178!5.48e-07!10;UBERON:0001869!9.07e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;2.15e-10;15!UBERON:0004237;2.07e-09;10!UBERON:0004695;2.07e-09;10!UBERON:0002111;2.07e-09;10!UBERON:0004178;2.07e-09;10!UBERON:0004732;1.37e-08;13!UBERON:0004733;1.95e-07;12!UBERON:0002028;1.95e-07;12!UBERON:0000125;8.84e-07;9!UBERON:0002308;8.84e-07;9!UBERON:0007625;9.63e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,1.19e-10,15;UBERON:0001016,1.63e-10,89;UBERON:0004237,1.31e-09,10;UBERON:0004695,1.31e-09,10;UBERON:0002111,1.31e-09,10;UBERON:0004178,1.31e-09,10;UBERON:0003075,1.41e-09,82;UBERON:0007284,1.41e-09,82;UBERON:0001017,4.41e-09,81;UBERON:0004121,5.40e-09,171;UBERON:0000924,5.40e-09,171;UBERON:0006601,5.40e-09,171;UBERON:0003076,9.11e-09,15;UBERON:0003057,9.11e-09,15;UBERON:0002346,9.27e-09,86;UBERON:0004732,1.98e-08,13;UBERON:0010371,8.91e-08,104;UBERON:0010314,1.04e-07,132;UBERON:0004733,3.11e-07,12;UBERON:0002028,3.11e-07,12;UBERON:0007277,3.11e-07,12;UBERON:0001049,3.45e-07,56;UBERON:0005068,3.45e-07,56;UBERON:0006241,3.45e-07,56;UBERON:0007135,3.45e-07,56;UBERON:0007625,5.41e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,1.11389717664042,0.331397375727916,5.3786011716142,3.61616716814386,8.03341099426111,5.85519358548608,7.1410213684537,4.28401451612931,5.01527554364941,8.01460763966959,9.58120975510189,6.40267461933494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,3.35350429851818,0.895037932904712,0,0.50133791063589,1.44846518960824,6.36228757640879,16.058950719987,3.40325341790644,3.32594096193846,2.81071314218003,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,5.29636723252875,0.573673241497627,0.709336764396714,1.12135520028461,0,0.98667019366864,0.933633106199299,0.808264032418128,0.653847612453835,1.81628913173918,0.576175924479999,0.234321431833797,0,0,0,0.23486899728753,0.323745888736263,0.280901613404497,0,0.859840221182376,0,1.18800285728205,2.22540236350701,0,0,0.168336113954066,0,0,6.14568669233173,1.83892677479412,3.30523729594513,0.680593098960126,1.07633781413317,2.34913127700424,1.27159140695737,0.300091096084402,0.412210116953756,0.257640540045629,0,3.03797398034279,4.67697624773753,4.03894038790583,2.39329736469978,0,6.03516307278244,3.22406714328449,1.18692414617341,0.193260853163297,0,0,2.19552671033272,1.98794652482228,1.39432731443422,2.59152637538426,4.28945446488568,2.18986415445498,1.56449532329816,2.57296375277154,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0.245976877086227,0.857839051492628,0.329250856225877,0,0,0.185176890317059,0,0,2.88662684050547,8.81071077810584,0.469634776943287,0,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0.448524337381443,0.87192013766656,0.1466765716419,0.129271715757778,0,0.845302752556,0,0,2.05765899409714,1.41849132023278,1.0656887160644,0,0,0,0,0,0,1.50719688529793,2.61460037580088,1.19967589418468,0,0,0,0,0,2.85273810081437,0,0,0,0,0,0,0,6.86055485400651,1.30139853857622,1.54657762555539,1.84267891867784,0.637938751653163,0,0,0,0,0.500170521059677,1.08506009479894,0.207970861530807,0,1.10391690523754,0,0,0,1.03473071292505,1.32845119707087,4.60922921354258,0,0.391602314925481,1.02943027143257,0,0,0,0,0,0,0,0.306923946576125,0.561320188866147,0,0,0,0,1.23367755042124,0.177561725313127,0.164254312027618,0.519254429183621,0.464841513839837,0,0,0,0,0,0,0,0.231046011313244,0,0,0.105551628892876,0,0.340187410553031,0.431831832204279,0,1.35473218771926,1.00337954770971,0,0,2.68649705666614,0,0,4.87255237721139,1.96808787419823,0.650756789328606,0,0.915694648183434,0.495056999523528,0,0,0,0.676695028044854,0.308097234229289,0,0,0.751941714077915,1.16013355131383,0.0852266274161009,0.623224249527161,0,0,0,0,1.39453664789186,1.5740617341532,1.3940745403212,2.46426864140871,0.532306030317022,0,0.74129687641568,0.429374660225974,0,0.316379424718726,0.953150969619124,1.535386747868,0.42793898803392,0,0.78494864019923,1.2591072030832,1.37268514868027,1.64937363283961,0.202182481573316,0,2.10629228119491,2.43816869544795,2.68084838594413,0,0.136499911407986,0.282810863907425,0,0,0,0,0.578775534266688,1.31178950409327,0.405820753925408,0.30982349809975,1.12678241012897,1.43411352204052,0.88424136911809,0,0.354761064070598,0.211107635297664,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0.296964680832639,0,0.994147647766298,1.96937182974718,0,0,0,0.19924798825107,0,0,16.4652578828469,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0,0,1.5677537021303,0,0,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0.19606253431774,0,0.189753732724185,0,0,0,0.141353071433941,0,0,0,0,0,0,0,1.14581926067151,0.802577647298789,0.937057782901357,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,1.12990370390266,2.60379656828827,1.19228767021794,0.50648636764703,0,0.881747022766871,0,0,0,0,1.20116498503375,0,0.248505071130865,0,0.951329442515298,1.255234155748,0.101998217636322,1.44475294950759,2.40168115483916,1.23214841002794,0,0.429765441419957,0,0,0,0,0,0,0,0,1.08089965062721,0,1.02418136999391,0.659326867049332,0.539228350833479,0,0,0,1.49823746722733,1.92903778158023,0.550157746388935,0.83088067605837,0,0,0.485996453264197,0,0,0,0.211200673038813,0,0,0,0,0,0,0,0.326587360109409,0,0,1.02232813071253,3.62598692864402,0,0,1.29282956361551,1.05786081394152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500763722825999,2.29363678276028,1.33114861844223,2.2354705058898,0,0.499921631848426,0.303298235083296,0,0,0,0,0.74627401443437,2.57084640831947,0,1.32582103692562,1.76097531226803,0,0.686520205190771,0.302461847526478,0.932623203496683,0.73927574994817,1.11507737014592,2.69881867298163,0.776314784381297,0.4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| |||
|short_description=p1@LCTL | |||
}} |
Revision as of 00:11, 12 January 2014
Short description: | p1@LCTL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCTL_5end |
Coexpression cluster: | C3504_astrocytoma_Chondrocyte_Astrocyte_Lens_Aortic_Fibroblast_Neural |
Association with transcript: | 0bp_to_ENST00000537670, uc002aqd.3, uc010bhw.2_5end |
EntrezGene: | LCTL |
HGNC: | 15583 |
UniProt: | B3KQY0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.77e-13 | 25 |
oligodendrocyte | 5.21e-13 | 7 |
macroglial cell | 5.21e-13 | 7 |
astrocyte | 5.21e-13 | 7 |
oligodendrocyte precursor cell | 5.21e-13 | 7 |
glial cell (sensu Vertebrata) | 5.74e-12 | 15 |
glial cell | 5.74e-12 | 15 |
glioblast | 5.74e-12 | 15 |
glioblast (sensu Vertebrata) | 5.74e-12 | 15 |
neurectodermal cell | 1.02e-11 | 59 |
neuron associated cell | 2.36e-10 | 17 |
neuron associated cell (sensu Vertebrata) | 2.36e-10 | 17 |
aortic smooth muscle cell | 1.31e-09 | 10 |
ectodermal cell | 2.40e-08 | 72 |
embryonic stem cell | 4.38e-08 | 5 |
electrically responsive cell | 6.17e-08 | 61 |
electrically active cell | 6.17e-08 | 61 |
migratory neural crest cell | 1.07e-07 | 41 |
smooth muscle cell | 5.84e-07 | 43 |
smooth muscle myoblast | 5.84e-07 | 43 |
muscle cell | 8.97e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 1.19e-10 | 15 |
nervous system | 1.63e-10 | 89 |
blood vessel smooth muscle | 1.31e-09 | 10 |
arterial system smooth muscle | 1.31e-09 | 10 |
artery smooth muscle tissue | 1.31e-09 | 10 |
aorta smooth muscle tissue | 1.31e-09 | 10 |
neural plate | 1.41e-09 | 82 |
presumptive neural plate | 1.41e-09 | 82 |
central nervous system | 4.41e-09 | 81 |
ectoderm-derived structure | 5.40e-09 | 171 |
ectoderm | 5.40e-09 | 171 |
presumptive ectoderm | 5.40e-09 | 171 |
posterior neural tube | 9.11e-09 | 15 |
chordal neural plate | 9.11e-09 | 15 |
neurectoderm | 9.27e-09 | 86 |
segmental subdivision of nervous system | 1.98e-08 | 13 |
ecto-epithelium | 8.91e-08 | 104 |
structure with developmental contribution from neural crest | 1.04e-07 | 132 |
segmental subdivision of hindbrain | 3.11e-07 | 12 |
hindbrain | 3.11e-07 | 12 |
presumptive hindbrain | 3.11e-07 | 12 |
neural tube | 3.45e-07 | 56 |
neural rod | 3.45e-07 | 56 |
future spinal cord | 3.45e-07 | 56 |
neural keel | 3.45e-07 | 56 |
pigment epithelium of eye | 5.41e-07 | 11 |