FFCP PHASE1:Hg19::chr17:46724108..46724134,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:46724108..46724134,-
|short_description=p6@ENST00000433510
|description=CAGE_peak_6_at_ENST00000433510_5end
|association_with_transcript=250bp_to_ENST0000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=250bp_to_ENST00000433510_5end | |||
|cluster_id=chr17:46724108..46724134,- | |||
|coexpression_cluster_id=C3648 | |||
|description=CAGE_peak_6_at_ENST00000433510_5end | |||
|id=chr17:46724108..46724134,- | |||
|ontology_enrichment_celltype=CL:0000066!3.54e-17!254;CL:1000507!4.46e-13!12;CL:1000494!4.46e-13!12;CL:1000449!3.13e-11!16;CL:1000497!1.23e-09!18;CL:0002518!1.23e-09!18;CL:0002681!1.92e-07!13;CL:0002584!1.92e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;4.89e-25;10!CL:1000494;4.89e-25;10!CL:1000449;1.18e-20;15!CL:1000497;5.03e-18;17!CL:0002518;5.03e-18;17!CL:0002178;1.09e-12;3!CL:0002681;6.86e-12;12!CL:0002584;6.86e-12;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,3.65e-25,10;CL:1000494,3.65e-25,10;CL:1000449,1.06e-20,15;CL:1000497,4.57e-18,17;CL:0002518,4.57e-18,17;CL:0002178,8.60e-13,3;CL:0000066,3.35e-12,253;CL:0002681,6.44e-12,12;CL:0002584,6.44e-12,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!7.96e-28!106;DOID:0050687!1.63e-26!143;DOID:162!2.63e-21!235;DOID:14566!2.20e-20!239;DOID:1749!2.20e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:3119;1.22e-09;14!DOID:299;9.90e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.59e-11,106;DOID:0050687,4.27e-10,143;DOID:3119,1.04e-09,14;DOID:299,9.73e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000489!5.87e-15!32;UBERON:0006554!1.05e-14!44;UBERON:0001008!3.27e-14!45;UBERON:0002113!2.40e-13!27;UBERON:0003918!2.40e-13!27;UBERON:0005095!2.40e-13!27;UBERON:0007687!2.40e-13!27;UBERON:0000080!3.64e-13!18;UBERON:0002120!3.64e-13!18;UBERON:0004875!3.64e-13!18;UBERON:0005721!3.64e-13!18;UBERON:0005754!3.64e-13!18;UBERON:0007297!3.64e-13!18;UBERON:0009773!4.46e-13!12;UBERON:0001231!4.46e-13!12;UBERON:0004810!4.46e-13!12;UBERON:0000058!8.92e-13!26;UBERON:0001737!1.21e-12!9;UBERON:0003886!2.45e-12!63;UBERON:0003887!2.89e-12!21;UBERON:0006555!3.58e-12!17;UBERON:0005103!3.58e-12!17;UBERON:0000083!3.58e-12!17;UBERON:0009201!3.58e-12!17;UBERON:0004819!3.58e-12!17;UBERON:0006553!3.58e-12!17;UBERON:0003074!3.58e-12!17;UBERON:0003060!3.58e-12!17;UBERON:0004876!1.83e-11!20;UBERON:0004211!3.13e-11!16;UBERON:0001285!3.13e-11!16;UBERON:0007684!3.13e-11!16;UBERON:0003220!3.13e-11!16;UBERON:0004208!3.13e-11!16;UBERON:0002417!5.02e-11!61;UBERON:0000916!5.02e-11!61;UBERON:0002553!2.75e-10!70;UBERON:0000464!9.96e-10!104;UBERON:0003064!9.96e-10!37;UBERON:0004119!6.46e-09!169;UBERON:0000925!6.46e-09!169;UBERON:0006595!6.46e-09!169;UBERON:0004921!1.09e-08!129;UBERON:0004185!1.09e-08!129;UBERON:0001557!1.42e-08!19;UBERON:0009569!3.14e-08!113;UBERON:0001007!3.42e-08!155;UBERON:0001555!3.42e-08!155;UBERON:0007026!3.42e-08!155;UBERON:0000466!3.68e-08!126;UBERON:0000072!7.86e-08!46;UBERON:0005172!8.86e-08!55;UBERON:0005173!8.86e-08!55;UBERON:0005177!9.53e-08!107;UBERON:0008947!1.71e-07!38;UBERON:0003258!1.71e-07!38;UBERON:0001225!1.92e-07!13;UBERON:0008987!1.92e-07!13;UBERON:0005910!3.63e-07!6;UBERON:0001851!4.20e-07!16;UBERON:0000063!8.97e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.89e-25;10!UBERON:0009773;4.89e-25;10!UBERON:0001231;4.89e-25;10!UBERON:0004810;4.89e-25;10!UBERON:0006554;1.12e-23;30!UBERON:0001008;1.12e-23;30!UBERON:0006555;1.18e-20;15!UBERON:0004819;1.18e-20;15!UBERON:0001285;1.18e-20;15!UBERON:0007684;1.18e-20;15!UBERON:0002113;1.90e-18;24!UBERON:0011143;1.90e-18;24!UBERON:0000489;6.45e-18;29!UBERON:0000945;6.27e-13;5!UBERON:0010039;6.27e-13;5!UBERON:0005409;1.57e-12;22!UBERON:0001225;6.86e-12;12!UBERON:0008987;6.86e-12;12!UBERON:0005910;4.28e-11;6!UBERON:0001851;2.25e-09;15!UBERON:0000353;2.25e-09;15!UBERON:0000365;4.60e-08;5!UBERON:0004921;2.98e-07;33!UBERON:0001737;5.97e-07;9!UBERON:0001557;5.97e-07;9!UBERON:0002417;9.75e-07;58!UBERON:0000916;9.75e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,3.65e-25,10;UBERON:0004211,1.06e-20,15;UBERON:0009773,1.06e-20,15;UBERON:0001231,1.06e-20,15;UBERON:0001285,1.06e-20,15;UBERON:0007684,1.06e-20,15;UBERON:0004208,1.06e-20,15;UBERON:0006555,2.66e-19,16;UBERON:0004819,2.66e-19,16;UBERON:0002113,6.13e-17,26;UBERON:0003918,6.13e-17,26;UBERON:0011143,6.13e-17,26;UBERON:0005095,6.13e-17,26;UBERON:0007687,6.13e-17,26;UBERON:0000489,1.14e-16,31;UBERON:0006554,3.93e-16,47;UBERON:0001008,1.01e-15,48;UBERON:0001225,6.44e-12,12;UBERON:0008987,6.44e-12,12;UBERON:0005910,3.39e-11,6;UBERON:0005409,5.54e-11,25;UBERON:0002417,5.90e-10,60;UBERON:0000916,5.90e-10,60;UBERON:0001851,2.14e-09,15;UBERON:0000353,2.14e-09,15;UBERON:0000945,2.97e-08,8;UBERON:0010039,2.97e-08,8;UBERON:0000365,3.90e-08,5;UBERON:0005172,5.51e-07,54;UBERON:0005173,5.51e-07,54;UBERON:0001737,7.04e-07,9;UBERON:0004119,9.80e-07,160;UBERON:0000925,9.80e-07,160;UBERON:0006595,9.80e-07,160 | |||
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| ||
|short_description=p6@ENST00000433510 | |||
}} | }} |
Latest revision as of 18:13, 25 July 2015
Short description: | p6@ENST00000433510 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ENST00000433510_5end |
Coexpression cluster: | C3648_acute_malignant_embryonic_small_transitionalcell_lens_Renal |
Association with transcript: | 250bp_to_ENST00000433510_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.65e-25 | 10 |
nephron tubule epithelial cell | 3.65e-25 | 10 |
epithelial cell of nephron | 1.06e-20 | 15 |
kidney cell | 4.57e-18 | 17 |
kidney epithelial cell | 4.57e-18 | 17 |
epithelial cell of stomach | 8.60e-13 | 3 |
epithelial cell | 3.35e-12 | 253 |
kidney cortical cell | 6.44e-12 | 12 |
renal cortical epithelial cell | 6.44e-12 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 3.65e-25 | 10 |
nephron epithelium | 1.06e-20 | 15 |
renal tubule | 1.06e-20 | 15 |
nephron tubule | 1.06e-20 | 15 |
nephron | 1.06e-20 | 15 |
uriniferous tubule | 1.06e-20 | 15 |
nephrogenic mesenchyme | 1.06e-20 | 15 |
excretory tube | 2.66e-19 | 16 |
kidney epithelium | 2.66e-19 | 16 |
kidney | 6.13e-17 | 26 |
kidney mesenchyme | 6.13e-17 | 26 |
upper urinary tract | 6.13e-17 | 26 |
kidney rudiment | 6.13e-17 | 26 |
kidney field | 6.13e-17 | 26 |
cavitated compound organ | 1.14e-16 | 31 |
urinary system structure | 3.93e-16 | 47 |
renal system | 1.01e-15 | 48 |
cortex of kidney | 6.44e-12 | 12 |
renal parenchyma | 6.44e-12 | 12 |
transitional epithelium | 3.39e-11 | 6 |
gastrointestinal system | 5.54e-11 | 25 |
abdominal segment of trunk | 5.90e-10 | 60 |
abdomen | 5.90e-10 | 60 |
cortex | 2.14e-09 | 15 |
parenchyma | 2.14e-09 | 15 |
stomach | 2.97e-08 | 8 |
food storage organ | 2.97e-08 | 8 |
urothelium | 3.90e-08 | 5 |
abdomen element | 5.51e-07 | 54 |
abdominal segment element | 5.51e-07 | 54 |
larynx | 7.04e-07 | 9 |
endoderm-derived structure | 9.80e-07 | 160 |
endoderm | 9.80e-07 | 160 |
presumptive endoderm | 9.80e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.59e-11 | 106 |
cell type cancer | 4.27e-10 | 143 |
gastrointestinal system cancer | 1.04e-09 | 14 |
adenocarcinoma | 9.73e-07 | 25 |