FFCP PHASE1:Hg19::chr3:123453008..123453046,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:123453008..123453046,- | |||
|coexpression_cluster_id=C4275 | |coexpression_cluster_id=C4275 | ||
|description=CAGE_peak_at_chr3:123453008..123453046,- | |description=CAGE_peak_at_chr3:123453008..123453046,- | ||
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|ontology_enrichment_celltype=CL:0000055!1.26e-17!180;CL:0000057!2.55e-13!75;CL:0002620!1.31e-10!23;CL:0000548!1.51e-10!679;CL:0000004!1.51e-10!679;CL:0000255!1.51e-10!679;CL:0000012!2.90e-10!682;CL:0000144!3.87e-09!625;CL:0002371!3.60e-07!591;CL:0000220!7.93e-07!246;CL:0000003!8.86e-07!722 | |ontology_enrichment_celltype=CL:0000055!1.26e-17!180;CL:0000057!2.55e-13!75;CL:0002620!1.31e-10!23;CL:0000548!1.51e-10!679;CL:0000004!1.51e-10!679;CL:0000255!1.51e-10!679;CL:0000012!2.90e-10!682;CL:0000144!3.87e-09!625;CL:0002371!3.60e-07!591;CL:0000220!7.93e-07!246;CL:0000003!8.86e-07!722 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.18e-12;23!CL:1000449;7.40e-12;15!CL:0002681;3.13e-11;12!CL:0002584;3.13e-11;12!CL:1000497;2.40e-10;17!CL:0002518;2.40e-10;17!CL:1000507;1.66e-09;10!CL:1000494;1.66e-09;10!CL:1000746;4.29e-09;7!CL:1000612;4.29e-09;7!CL:0000650;1.38e-08;2!CL:1000500;1.38e-08;2!CL:1000618;1.38e-08;2!CL:1001318;1.38e-08;2!CL:0002173;1.38e-08;2 | |ontology_enrichment_celltype_v019=CL:0002620;2.18e-12;23!CL:1000449;7.40e-12;15!CL:0002681;3.13e-11;12!CL:0002584;3.13e-11;12!CL:1000497;2.40e-10;17!CL:0002518;2.40e-10;17!CL:1000507;1.66e-09;10!CL:1000494;1.66e-09;10!CL:1000746;4.29e-09;7!CL:1000612;4.29e-09;7!CL:0000650;1.38e-08;2!CL:1000500;1.38e-08;2!CL:1000618;1.38e-08;2!CL:1001318;1.38e-08;2!CL:0002173;1.38e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002620,2.93e-12,23;CL:1000449,9.65e-12,15;CL:0002681,4.58e-11,12;CL:0002584,4.58e-11,12;CL:1000497,3.02e-10,17;CL:0002518,3.02e-10,17;CL:1000507,2.48e-09,10;CL:1000494,2.48e-09,10;CL:1000746,5.07e-09,7;CL:1000612,5.07e-09,7;CL:0000650,2.38e-08,2;CL:1000500,2.38e-08,2;CL:1000618,2.38e-08,2;CL:1001318,2.38e-08,2;CL:0002173,2.38e-08,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3307;3.74e-09;2!DOID:17;1.08e-07;5!DOID:450;1.08e-07;5!DOID:66;1.08e-07;5!DOID:423;1.08e-07;5!DOID:0080000;1.08e-07;5!DOID:11722;1.08e-07;5!DOID:1749;9.13e-07;14 | |ontology_enrichment_disease_v019=DOID:3307;3.74e-09;2!DOID:17;1.08e-07;5!DOID:450;1.08e-07;5!DOID:66;1.08e-07;5!DOID:423;1.08e-07;5!DOID:0080000;1.08e-07;5!DOID:11722;1.08e-07;5!DOID:1749;9.13e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:3307,2.51e-09,2;DOID:17,1.59e-07,5;DOID:450,1.59e-07,5;DOID:66,1.59e-07,5;DOID:423,1.59e-07,5;DOID:0080000,1.59e-07,5;DOID:11722,1.59e-07,5;DOID:1749,9.65e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!8.57e-14!95;UBERON:0000475!2.71e-11!365;UBERON:0005256!7.97e-09!143;UBERON:0002097!2.00e-08!40;UBERON:0001444!9.16e-08!48;UBERON:0000165!1.57e-07!28;UBERON:0000930!1.57e-07!28;UBERON:0002199!2.13e-07!45;UBERON:0002416!2.13e-07!45 | |ontology_enrichment_uberon=UBERON:0003102!8.57e-14!95;UBERON:0000475!2.71e-11!365;UBERON:0005256!7.97e-09!143;UBERON:0002097!2.00e-08!40;UBERON:0001444!9.16e-08!48;UBERON:0000165!1.57e-07!28;UBERON:0000930!1.57e-07!28;UBERON:0002199!2.13e-07!45;UBERON:0002416!2.13e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;7.40e-12;15!UBERON:0004819;7.40e-12;15!UBERON:0001285;7.40e-12;15!UBERON:0007684;7.40e-12;15!UBERON:0001225;3.13e-11;12!UBERON:0008987;3.13e-11;12!UBERON:0003343;1.43e-09;4!UBERON:0004785;1.43e-09;4!UBERON:0004211;1.66e-09;10!UBERON:0009773;1.66e-09;10!UBERON:0001231;1.66e-09;10!UBERON:0004810;1.66e-09;10!UBERON:0000074;4.29e-09;7!UBERON:0001229;4.29e-09;7!UBERON:0001851;7.46e-09;15!UBERON:0000353;7.46e-09;15!UBERON:0003567;1.38e-08;2!UBERON:0003838;1.38e-08;2!UBERON:0003586;1.38e-08;2!UBERON:0005169;1.38e-08;2!UBERON:0002321;1.38e-08;2!UBERON:0005215;1.38e-08;2!UBERON:0002303;1.38e-08;2!UBERON:0002319;1.38e-08;2!UBERON:0002097;1.90e-08;41!UBERON:0002113;4.79e-07;24!UBERON:0011143;4.79e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0006555;7.40e-12;15!UBERON:0004819;7.40e-12;15!UBERON:0001285;7.40e-12;15!UBERON:0007684;7.40e-12;15!UBERON:0001225;3.13e-11;12!UBERON:0008987;3.13e-11;12!UBERON:0003343;1.43e-09;4!UBERON:0004785;1.43e-09;4!UBERON:0004211;1.66e-09;10!UBERON:0009773;1.66e-09;10!UBERON:0001231;1.66e-09;10!UBERON:0004810;1.66e-09;10!UBERON:0000074;4.29e-09;7!UBERON:0001229;4.29e-09;7!UBERON:0001851;7.46e-09;15!UBERON:0000353;7.46e-09;15!UBERON:0003567;1.38e-08;2!UBERON:0003838;1.38e-08;2!UBERON:0003586;1.38e-08;2!UBERON:0005169;1.38e-08;2!UBERON:0002321;1.38e-08;2!UBERON:0005215;1.38e-08;2!UBERON:0002303;1.38e-08;2!UBERON:0002319;1.38e-08;2!UBERON:0002097;1.90e-08;41!UBERON:0002113;4.79e-07;24!UBERON:0011143;4.79e-07;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,9.65e-12,15;UBERON:0009773,9.65e-12,15;UBERON:0001231,9.65e-12,15;UBERON:0001285,9.65e-12,15;UBERON:0007684,9.65e-12,15;UBERON:0004208,9.65e-12,15;UBERON:0001225,4.58e-11,12;UBERON:0008987,4.58e-11,12;UBERON:0006555,6.01e-11,16;UBERON:0004819,6.01e-11,16;UBERON:0003343,1.11e-09,4;UBERON:0004785,1.11e-09,4;UBERON:0003102,1.15e-09,99;UBERON:0004810,2.48e-09,10;UBERON:0002097,2.70e-09,41;UBERON:0010532,5.07e-09,7;UBERON:0000074,5.07e-09,7;UBERON:0001229,5.07e-09,7;UBERON:0001230,5.07e-09,7;UBERON:0003220,5.07e-09,7;UBERON:0005749,5.07e-09,7;UBERON:0004199,5.07e-09,7;UBERON:0004209,5.07e-09,7;UBERON:0004198,5.07e-09,7;UBERON:0001851,1.00e-08,15;UBERON:0000353,1.00e-08,15;UBERON:0003567,2.38e-08,2;UBERON:0003838,2.38e-08,2;UBERON:0003586,2.38e-08,2;UBERON:0005169,2.38e-08,2;UBERON:0002321,2.38e-08,2;UBERON:0005215,2.38e-08,2;UBERON:0002303,2.38e-08,2;UBERON:0002319,2.38e-08,2;UBERON:0002199,4.75e-08,46;UBERON:0002416,4.75e-08,46;UBERON:0005103,6.71e-08,8;UBERON:0000083,6.71e-08,8;UBERON:0009201,6.71e-08,8;UBERON:0006553,6.71e-08,8;UBERON:0003074,6.71e-08,8;UBERON:0003060,6.71e-08,8;UBERON:0000080,5.02e-07,9;UBERON:0002120,5.02e-07,9;UBERON:0004875,5.02e-07,9;UBERON:0005721,5.02e-07,9;UBERON:0005754,5.02e-07,9;UBERON:0007297,5.02e-07,9 | |||
|phase1_expression=0,0.428201047781966,0.140954404095971,0,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0.672325146451775,1.20538905604795,0,0,0.738726348460727,0.612002073732759,0.313454721478088,0,0.547497700291537,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.665188192387692,0.43917392846563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0.312160076830321,0,0,0,0.161872944368132,0,1.22492502752936,0.368502951935304,0.103325781175765,0,0.741800787835671,0,0,0.336672227908132,0.500474079487857,0.277064115484183,0.877955241761676,2.45190236639216,0.600952235626387,0.113432183160021,3.40840307808838,0.85422955527427,1.27159140695737,0.900273288253207,1.03052529238439,1.03056216018252,1.30281799432113,0.675105328965065,0.487185025805993,2.27190396819703,0.184099797284599,0,2.13005755509969,2.11579406278045,1.69560592310488,0.386521706326594,0.545492241181669,0,0,0,0,0,0,0,0,1.28648187638577,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.185176890317059,0,0,0,0.579652024875384,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.1466765716419,0.258543431515556,0,0,0.26593811658487,2.08014873822732,0.514414748524284,0,0,0,0,0,0,0.355391948742546,0,0.301439377059586,3.48613383440118,0.099972991182057,0,0,0,0.479249710983165,0,0,0.723906533337896,1.2328579353023,1.07436577943937,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0.542530047399471,0.623912584592421,0.713715955188647,0.473107245101804,1.05427273493442,0,0,0,0,0.184369168541703,1.12948698808508,0,0,0,0,0,0,0,0.604780586659361,0.248107807818777,0.920771839728375,0.561320188866147,0.384417447767103,0.511707249066704,0.64341568457443,2.96836132889982,0.154209693802656,0,0.0821271560138091,0,0.232420756919918,0,0,0,0.68888668898764,2.00300284807389,1.18011973463482,0,0.231046011313244,0.784349769176855,1.46139224653261,0,0,0,2.15915916102139,1.54227252690289,1.35473218771926,1.00337954770971,1.01950509218015,0,2.91037181138832,0,0,0.769350375349168,0.328014645699706,0,0,0.915694648183434,0.41254749960294,0,0,0,0.096670718292122,0,0,0,0.322260734604821,0.145016693914229,0.681813019328807,0.0890320356467374,0,0.576570202095319,0.765676274967505,0,0,0,0,0,0.532306030317022,1.73986598415015,0,0,0,0.316379424718726,0.190630193923825,0.767693373934002,1.71175595213568,0.636406495851874,0,0.539617372749944,0.54907405947211,0.589062011728432,0.202182481573316,0,0.842516912477962,0,0,0,1.09199929126389,0.282810863907425,0,0,0,0,0,1.31178950409327,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0.818149460017238,0,0.311039587661807,1.61763032065188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.870592065804026,0,0,0,0,0,0,0,0,1.78154502040776,0.19871461170299,0,0,0,0,0,0,0,0,0.288109595976299,0,0,0.271808412147228,0.732219924186332,0.509991088181609,0.288950589901519,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0.720599767084807,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.528001682597033,0,0,0,0,0,0,0.864221491201268,0.653174720218818,0,0,0.851940108927109,0.339936274560377,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.624902039810533,0,0,2.82318983637806,0,0,0.149254802886874,0,0,0,0.50313580350515,0,0.915360273587694,0.151230923763239,0.15543720058278,0,0.318593534327405,0,0.310525913752519,0,0,0.521745061811734,0.150257608997218,1.14241563650639,0.813741466409323,0.181848659202559,0.214821114084977,0.464033759878494,1.59238355479446,1.60011105865261,0.343395705182793,0,0,0,0,0,0.680117776536817,0.926089897295336,0.489473409012935,3.40268798054826,0.617602894321944,0.219284049578707,0.353378291891762,0,0,0,0,3.03859956177382,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0.736423801007363,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0.0788617450012534,0,0.352675943690684,1.531227386766,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,10.0110672871046,0,1.65085738669511,1.27078232765372,1.90691047733584,0,0,0,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354581522651905,0,0,0,0,0,0.215927591218621,0,0,0,0,0,1.60342272946051,0.414432328326074,0.17071847709395,0,0,0,0.255640214277473,0.423387050190929,0,0.62041277132864,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0.093983917979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| ||
|short_description=p@chr3:123453008..123453046,- | |short_description=p@chr3:123453008..123453046,- | ||
}} | }} |
Latest revision as of 15:10, 29 July 2015
Short description: | p@chr3:123453008..123453046, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:123453008..123453046, - |
Coexpression cluster: | C4275_oral_transitionalcell_tridermal_mesothelioma_Renal_Fibroblast_meningioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 2.93e-12 | 23 |
epithelial cell of nephron | 9.65e-12 | 15 |
kidney cortical cell | 4.58e-11 | 12 |
renal cortical epithelial cell | 4.58e-11 | 12 |
kidney cell | 3.02e-10 | 17 |
kidney epithelial cell | 3.02e-10 | 17 |
kidney tubule cell | 2.48e-09 | 10 |
nephron tubule epithelial cell | 2.48e-09 | 10 |
glomerular cell | 5.07e-09 | 7 |
kidney corpuscule cell | 5.07e-09 | 7 |
mesangial cell | 2.38e-08 | 2 |
kidney interstitial cell | 2.38e-08 | 2 |
juxtaglomerular complex cell | 2.38e-08 | 2 |
renal interstitial pericyte | 2.38e-08 | 2 |
extraglomerular mesangial cell | 2.38e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
teratoma | 2.51e-09 | 2 |
musculoskeletal system disease | 1.59e-07 | 5 |
myotonic disease | 1.59e-07 | 5 |
muscle tissue disease | 1.59e-07 | 5 |
myopathy | 1.59e-07 | 5 |
muscular disease | 1.59e-07 | 5 |
myotonic dystrophy | 1.59e-07 | 5 |
squamous cell carcinoma | 9.65e-07 | 14 |