FFCP PHASE1:Hg19::chr6:160137409..160137424,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:160137409..160137424,+ | |||
|coexpression_cluster_id=C575 | |||
|description=CAGE_peak_at_chr6:160137409..160137424,+ | |description=CAGE_peak_at_chr6:160137409..160137424,+ | ||
|id=chr6:160137409..160137424,+ | |id=chr6:160137409..160137424,+ | ||
|ontology_enrichment_celltype=CL:0002057!4.11e-31!42;CL:0000860!3.17e-28!45;CL:0002194!1.93e-24!63;CL:0000576!1.93e-24!63;CL:0000040!1.93e-24!63;CL:0000559!1.93e-24!63;CL:0002009!2.74e-23!65;CL:0000766!5.05e-22!76;CL:0000839!1.04e-20!70;CL:0000557!3.09e-20!71;CL:0000763!3.50e-13!112;CL:0000049!3.50e-13!112;CL:0000738!2.36e-09!140;CL:0002087!8.44e-09!119;CL:0002031!8.86e-07!124 | |ontology_enrichment_celltype=CL:0002057!4.11e-31!42;CL:0000860!3.17e-28!45;CL:0002194!1.93e-24!63;CL:0000576!1.93e-24!63;CL:0000040!1.93e-24!63;CL:0000559!1.93e-24!63;CL:0002009!2.74e-23!65;CL:0000766!5.05e-22!76;CL:0000839!1.04e-20!70;CL:0000557!3.09e-20!71;CL:0000763!3.50e-13!112;CL:0000049!3.50e-13!112;CL:0000738!2.36e-09!140;CL:0002087!8.44e-09!119;CL:0002031!8.86e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.90e-88;33!CL:0002057;4.90e-88;33!CL:0000473;7.45e-61;39!CL:0000234;7.45e-61;39!CL:0000576;1.82e-49;48!CL:0000766;5.78e-30;69!CL:0002087;2.42e-15;104!CL:0000763;1.81e-12;100!CL:0002393;1.71e-11;6!CL:0002397;1.71e-11;6!CL:0000738;3.22e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.20e-97,42;CL:0002057,1.20e-97,42;CL:0000473,5.69e-85,48;CL:0000234,5.69e-85,48;CL:0002194,3.23e-67,59;CL:0000576,3.23e-67,59;CL:0000040,3.23e-67,59;CL:0000559,3.23e-67,59;CL:0002009,6.33e-65,61;CL:0000839,8.57e-60,66;CL:0000557,7.40e-59,67;CL:0000766,1.46e-54,72;CL:0000763,3.04e-35,108;CL:0000049,3.04e-35,108;CL:0002087,7.07e-33,115;CL:0002031,2.36e-31,120;CL:0000738,3.20e-27,136;CL:0002032,2.15e-22,161;CL:0000837,2.15e-22,161;CL:0000037,2.69e-21,168;CL:0000988,5.18e-20,177;CL:0000134,7.24e-09,354;CL:0002320,1.31e-08,361;CL:0002393,7.37e-08,9;CL:0002397,7.37e-08,9;CL:0000219,1.06e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.29e-71;42!UBERON:0005425;1.78e-08;1!CL:0000049;6.61e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.36e-18!102;UBERON:0003061!6.36e-18!102;UBERON:0002193!1.08e-17!112;UBERON:0002371!1.48e-16!80;UBERON:0002405!8.60e-15!115;UBERON:0001474!1.48e-14!86;UBERON:0004765!2.77e-12!101;UBERON:0001434!2.77e-12!101;UBERON:0002204!4.20e-08!167;UBERON:0003081!6.82e-07!216 | |ontology_enrichment_uberon=UBERON:0002390!6.36e-18!102;UBERON:0003061!6.36e-18!102;UBERON:0002193!1.08e-17!112;UBERON:0002371!1.48e-16!80;UBERON:0002405!8.60e-15!115;UBERON:0001474!1.48e-14!86;UBERON:0004765!2.77e-12!101;UBERON:0001434!2.77e-12!101;UBERON:0002204!4.20e-08!167;UBERON:0003081!6.82e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.78e-08;1!UBERON:0001785;1.78e-08;1!UBERON:0002464;1.78e-08;1!UBERON:0004904;1.78e-08;1!UBERON:0001021;1.78e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.59e-51,76;UBERON:0001474,1.61e-47,82;UBERON:0004765,5.36e-43,90;UBERON:0002405,1.69e-41,93;UBERON:0002390,3.33e-39,98;UBERON:0003061,3.33e-39,98;UBERON:0001434,2.38e-38,100;UBERON:0002193,3.04e-35,108;UBERON:0002204,1.90e-21,167;UBERON:0003081,6.20e-17,203;UBERON:0000926,1.67e-10,315;UBERON:0004120,1.67e-10,315;UBERON:0006603,1.67e-10,315;UBERON:0000941,1.91e-08,1;UBERON:0001785,1.91e-08,1;UBERON:0002464,1.91e-08,1;UBERON:0004904,1.91e-08,1;UBERON:0001021,1.91e-08,1;UBERON:0003902,1.91e-08,1;UBERON:0005425,1.91e-08,1;UBERON:0002384,2.94e-08,371 | |||
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|short_description=p@chr6:160137409..160137424,+ | |short_description=p@chr6:160137409..160137424,+ | ||
}} | }} |
Latest revision as of 21:41, 30 July 2015
Short description: | p@chr6:160137409..160137424, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:160137409..160137424, + |
Coexpression cluster: | C575_embryonic_CD14_CD34_immature_chorionic_Mast_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.20e-97 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.20e-97 | 42 |
defensive cell | 5.69e-85 | 48 |
phagocyte | 5.69e-85 | 48 |
monopoietic cell | 3.23e-67 | 59 |
monocyte | 3.23e-67 | 59 |
monoblast | 3.23e-67 | 59 |
promonocyte | 3.23e-67 | 59 |
macrophage dendritic cell progenitor | 6.33e-65 | 61 |
myeloid lineage restricted progenitor cell | 8.57e-60 | 66 |
granulocyte monocyte progenitor cell | 7.40e-59 | 67 |
myeloid leukocyte | 1.46e-54 | 72 |
myeloid cell | 3.04e-35 | 108 |
common myeloid progenitor | 3.04e-35 | 108 |
nongranular leukocyte | 7.07e-33 | 115 |
hematopoietic lineage restricted progenitor cell | 2.36e-31 | 120 |
leukocyte | 3.20e-27 | 136 |
hematopoietic oligopotent progenitor cell | 2.15e-22 | 161 |
hematopoietic multipotent progenitor cell | 2.15e-22 | 161 |
hematopoietic stem cell | 2.69e-21 | 168 |
hematopoietic cell | 5.18e-20 | 177 |
mesenchymal cell | 7.24e-09 | 354 |
connective tissue cell | 1.31e-08 | 361 |
intermediate monocyte | 7.37e-08 | 9 |
CD14-positive, CD16-positive monocyte | 7.37e-08 | 9 |
motile cell | 1.06e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.59e-51 | 76 |
bone element | 1.61e-47 | 82 |
skeletal element | 5.36e-43 | 90 |
immune system | 1.69e-41 | 93 |
hematopoietic system | 3.33e-39 | 98 |
blood island | 3.33e-39 | 98 |
skeletal system | 2.38e-38 | 100 |
hemolymphoid system | 3.04e-35 | 108 |
musculoskeletal system | 1.90e-21 | 167 |
lateral plate mesoderm | 6.20e-17 | 203 |
mesoderm | 1.67e-10 | 315 |
mesoderm-derived structure | 1.67e-10 | 315 |
presumptive mesoderm | 1.67e-10 | 315 |
cranial nerve II | 1.91e-08 | 1 |
cranial nerve | 1.91e-08 | 1 |
nerve trunk | 1.91e-08 | 1 |
nerve connecting eye with brain | 1.91e-08 | 1 |
nerve | 1.91e-08 | 1 |
retinal neural layer | 1.91e-08 | 1 |
presumptive neural retina | 1.91e-08 | 1 |
connective tissue | 2.94e-08 | 371 |