FFCP PHASE1:Mm9::chr8:48374708..48374738,-: Difference between revisions
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{{FFCP|EntrezGene=71069|HGNC=|MCL_coexpression_id=3678|UniProt=Q499E5|association_with_transcript=17bp_to_ENSMUST00000079195,NM_001114311,uc009lqw.2,uc009lqx.2_5end|description=CAGE_peak_1_at_Stox2_5end|id=chr8:48374708..48374738,-|ontology_enrichment_celltype=CL:0000221!6.03e-16!44;CL:0000133!6.03e-16!44;CL:0000540!1.40e-15!33;CL:0000047!1.40e-15!33;CL:0000031!1.40e-15!33;CL:0000404!1.40e-15!33;CL:0002319!1.65e-15!43;CL:0000117!6.68e-13!23;CL:0000337!6.68e-13!23;CL:0000393!9.89e-12!39;CL:0000211!9.89e-12!39;CL:0000055!1.74e-11!50|ontology_enrichment_celltype_v019_2=CL:0000221,1.00e-16,44;CL:0000133,1.00e-16,44;CL:0000540,1.84e-16,33;CL:0000047,1.84e-16,33;CL:0000031,1.84e-16,33;CL:0000404,1.84e-16,33;CL:0002319,2.92e-16,43;CL:0000117,1.29e-13,23;CL:0000337,1.29e-13,23;CL:0000393,1.64e-11,39;CL:0000211,1.64e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.28e-25!73;UBERON:0005743!4.28e-25!73;UBERON:0004121!8.20e-25!102;UBERON:0000924!8.20e-25!102;UBERON:0006601!8.20e-25!102;UBERON:0000073!9.14e-24!75;UBERON:0001016!9.14e-24!75;UBERON:0002346!5.21e-21!71;UBERON:0003075!5.21e-21!71;UBERON:0007284!5.21e-21!71;UBERON:0000033!8.58e-19!63;UBERON:0001049!2.83e-16!52;UBERON:0005068!2.83e-16!52;UBERON:0006241!2.83e-16!52;UBERON:0007135!2.83e-16!52;UBERON:0003056!4.48e-16!49;UBERON:0000955!1.51e-14!50;UBERON:0006238!1.51e-14!50;UBERON:0002616!4.00e-14!49;UBERON:0000468!4.36e-12!333;UBERON:0003080!6.46e-12!40;UBERON:0002780!2.19e-11!39;UBERON:0001890!2.19e-11!39;UBERON:0006240!2.19e-11!39;UBERON:0002020!7.81e-11!34;UBERON:0000922!7.06e-10!328;UBERON:0000153!2.29e-08!94;UBERON:0002791!3.95e-08!29;UBERON:0003528!3.95e-08!29;UBERON:0001893!3.95e-08!29;UBERON:0007811!3.74e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.97e-27,73;UBERON:0004121,2.54e-26,95;UBERON:0000924,2.54e-26,95;UBERON:0006601,2.54e-26,95;UBERON:0001016,4.84e-25,75;UBERON:0002346,9.86e-24,64;UBERON:0003075,9.86e-24,64;UBERON:0007284,9.86e-24,64;UBERON:0010314,3.06e-22,92;UBERON:0010371,1.38e-21,73;UBERON:0000073,3.16e-18,54;UBERON:0001049,2.24e-17,52;UBERON:0005068,2.24e-17,52;UBERON:0006241,2.24e-17,52;UBERON:0007135,2.24e-17,52;UBERON:0003056,5.46e-17,49;UBERON:0000955,4.02e-14,47;UBERON:0006238,4.02e-14,47;UBERON:0002616,1.11e-13,46;UBERON:0003080,1.44e-12,40;UBERON:0002780,5.28e-12,39;UBERON:0001890,5.28e-12,39;UBERON:0006240,5.28e-12,39;UBERON:0002020,2.04e-11,34;UBERON:0003528,1.52e-08,29;UBERON:0002791,1.52e-08,29;UBERON:0001893,1.52e-08,29;UBERON:0000922,1.37e-07,320|phase1_expression=3.04282809499109,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0.629484089877886,0.912392380975631,0.550640256485045,0,6.97680500417429,3.51497892375155,6.22175677037707,3.63964696225943,4.31257693094915,0,0,0,1.02903774414379,0.286533439938757,0,10.9250888864183,8.99284664762456,8.87363964908651,0.677689064138264,0,0,0,0,3.59520132622086,5.37905627450176,5.49554945234932,4.72520784160917,4.6271491497304,6.85562362569129,5.52171352379034,6.00204916153275,5.75072826109418,4.5960939330501,7.70811166995721,4.34136949489638,5.06901559745603,9.62769900430415,8.5083508550241,10.939180781692,5.862842979029,5.06486349028512,3.97275444219706,9.1334861496837,9.25415925194169,13.2343606535963,0.075726193333184,0.453429360640713,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,5.35204995151386,0,0,0,0.216491041011214,0.253359865475099,0,0.11418387971906,0,1.92974780784272,1.90833859442749,2.74018930480927,0.691846491768175,1.50722640552623,2.11659672844269,1.13099932196708,0,0.86759614151947,1.76922110389975,2.26473589926373,2.20841518460394,0.969750506270444,1.86391761218122,2.63502717310392,3.14170060220183,0.766371165625774,0,0,0,7.48953197024113,3.66000482254901,3.64397621127307,2.78118912307642,3.58001640262463,5.61027720310812,4.38051410282946,2.74966282395854,1.8661045591514,2.0217820674694,3.15662783829711,7.80722657776222,5.74755261083682,5.40186389416048,3.76762044589288,8.36848939561333,8.07116437794554,8.80796210861451,5.43277078551933,7.97601573851516,9.07709184805532,7.03804496655795,4.16471891612392,2.50242524303038,2.78601733217733,1.64625709126355,6.56813080501028,0,0,0,5.79952163099405,2.11073453982987,3.42117916775928,4.26140524053378,4.32881309844288,4.01094493507183,2.55787339225449,3.48755421819505,2.6856028744449,2.30383789878873,2.13417703302824,1.54030738137126,2.04679982395465,1.09775057645525,1.74468344388483,2.3131894342054,4.11618449517138,0.330418782983798,1.05780226665418,3.19932375802851,2.32236671860439,3.60828891701861,2.8235693447268,3.11329261382818,2.09248188723815,1.42358718463353,1.31759163779209,1.50801125280162,1.59165177632921,2.33956904542944,1.79763881730844,0.864552199498777,0.796565093017469,1.70701110857774,2.62771579002376,1.1270773567308,1.01825663922657,0.969762435838129,2.31448205638051,1.07502113111237,0.590440591918409,0.4709961835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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:71069 | |||
|HGNC= | |||
|MCL_coexpression_id=3678 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q499E5 | |||
|association_with_transcript=17bp_to_ENSMUST00000079195,NM_001114311,uc009lqw.2,uc009lqx.2_5end | |||
|cluster_id=chr8:48374708..48374738,- | |||
|description=CAGE_peak_1_at_Stox2_5end | |||
|id=chr8:48374708..48374738,- | |||
|ontology_enrichment_celltype=CL:0000221!6.03e-16!44;CL:0000133!6.03e-16!44;CL:0000540!1.40e-15!33;CL:0000047!1.40e-15!33;CL:0000031!1.40e-15!33;CL:0000404!1.40e-15!33;CL:0002319!1.65e-15!43;CL:0000117!6.68e-13!23;CL:0000337!6.68e-13!23;CL:0000393!9.89e-12!39;CL:0000211!9.89e-12!39;CL:0000055!1.74e-11!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.00e-16,44;CL:0000133,1.00e-16,44;CL:0000540,1.84e-16,33;CL:0000047,1.84e-16,33;CL:0000031,1.84e-16,33;CL:0000404,1.84e-16,33;CL:0002319,2.92e-16,43;CL:0000117,1.29e-13,23;CL:0000337,1.29e-13,23;CL:0000393,1.64e-11,39;CL:0000211,1.64e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.28e-25!73;UBERON:0005743!4.28e-25!73;UBERON:0004121!8.20e-25!102;UBERON:0000924!8.20e-25!102;UBERON:0006601!8.20e-25!102;UBERON:0000073!9.14e-24!75;UBERON:0001016!9.14e-24!75;UBERON:0002346!5.21e-21!71;UBERON:0003075!5.21e-21!71;UBERON:0007284!5.21e-21!71;UBERON:0000033!8.58e-19!63;UBERON:0001049!2.83e-16!52;UBERON:0005068!2.83e-16!52;UBERON:0006241!2.83e-16!52;UBERON:0007135!2.83e-16!52;UBERON:0003056!4.48e-16!49;UBERON:0000955!1.51e-14!50;UBERON:0006238!1.51e-14!50;UBERON:0002616!4.00e-14!49;UBERON:0000468!4.36e-12!333;UBERON:0003080!6.46e-12!40;UBERON:0002780!2.19e-11!39;UBERON:0001890!2.19e-11!39;UBERON:0006240!2.19e-11!39;UBERON:0002020!7.81e-11!34;UBERON:0000922!7.06e-10!328;UBERON:0000153!2.29e-08!94;UBERON:0002791!3.95e-08!29;UBERON:0003528!3.95e-08!29;UBERON:0001893!3.95e-08!29;UBERON:0007811!3.74e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.97e-27,73;UBERON:0004121,2.54e-26,95;UBERON:0000924,2.54e-26,95;UBERON:0006601,2.54e-26,95;UBERON:0001016,4.84e-25,75;UBERON:0002346,9.86e-24,64;UBERON:0003075,9.86e-24,64;UBERON:0007284,9.86e-24,64;UBERON:0010314,3.06e-22,92;UBERON:0010371,1.38e-21,73;UBERON:0000073,3.16e-18,54;UBERON:0001049,2.24e-17,52;UBERON:0005068,2.24e-17,52;UBERON:0006241,2.24e-17,52;UBERON:0007135,2.24e-17,52;UBERON:0003056,5.46e-17,49;UBERON:0000955,4.02e-14,47;UBERON:0006238,4.02e-14,47;UBERON:0002616,1.11e-13,46;UBERON:0003080,1.44e-12,40;UBERON:0002780,5.28e-12,39;UBERON:0001890,5.28e-12,39;UBERON:0006240,5.28e-12,39;UBERON:0002020,2.04e-11,34;UBERON:0003528,1.52e-08,29;UBERON:0002791,1.52e-08,29;UBERON:0001893,1.52e-08,29;UBERON:0000922,1.37e-07,320 | |||
|phase1_expression=3.04282809499109,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0.332469290716985,0.204169356262369,0,0,0,0,0,0,0.629484089877886,0.912392380975631,0.550640256485045,0,6.97680500417429,3.51497892375155,6.22175677037707,3.63964696225943,4.31257693094915,0,0,0,1.02903774414379,0.286533439938757,0,10.9250888864183,8.99284664762456,8.87363964908651,0.677689064138264,0,0,0,0,3.59520132622086,5.37905627450176,5.49554945234932,4.72520784160917,4.6271491497304,6.85562362569129,5.52171352379034,6.00204916153275,5.75072826109418,4.5960939330501,7.70811166995721,4.34136949489638,5.06901559745603,9.62769900430415,8.5083508550241,10.939180781692,5.862842979029,5.06486349028512,3.97275444219706,9.1334861496837,9.25415925194169,13.2343606535963,0.075726193333184,0.453429360640713,0.289864488701678,0,0,0,0,0,0.421333260395256,0,0,0,5.35204995151386,0,0,0,0.216491041011214,0.253359865475099,0,0.11418387971906,0,1.92974780784272,1.90833859442749,2.74018930480927,0.691846491768175,1.50722640552623,2.11659672844269,1.13099932196708,0,0.86759614151947,1.76922110389975,2.26473589926373,2.20841518460394,0.969750506270444,1.86391761218122,2.63502717310392,3.14170060220183,0.766371165625774,0,0,0,7.48953197024113,3.66000482254901,3.64397621127307,2.78118912307642,3.58001640262463,5.61027720310812,4.38051410282946,2.74966282395854,1.8661045591514,2.0217820674694,3.15662783829711,7.80722657776222,5.74755261083682,5.40186389416048,3.76762044589288,8.36848939561333,8.07116437794554,8.80796210861451,5.43277078551933,7.97601573851516,9.07709184805532,7.03804496655795,4.16471891612392,2.50242524303038,2.78601733217733,1.64625709126355,6.56813080501028,0,0,0,5.79952163099405,2.11073453982987,3.42117916775928,4.26140524053378,4.32881309844288,4.01094493507183,2.55787339225449,3.48755421819505,2.6856028744449,2.30383789878873,2.13417703302824,1.54030738137126,2.04679982395465,1.09775057645525,1.74468344388483,2.3131894342054,4.11618449517138,0.330418782983798,1.05780226665418,3.19932375802851,2.32236671860439,3.60828891701861,2.8235693447268,3.11329261382818,2.09248188723815,1.42358718463353,1.31759163779209,1.50801125280162,1.59165177632921,2.33956904542944,1.79763881730844,0.864552199498777,0.796565093017469,1.70701110857774,2.62771579002376,1.1270773567308,1.01825663922657,0.969762435838129,2.31448205638051,1.07502113111237,0.590440591918409,0.470996183524124,0.246794327843601,0,0.667380422864376,0.393117990226406,0,0.608580364165509,0,0,0.287696137450811,0,0.549122826376163,0,0.744281895337007,0,0,0,0,0.554259570499814,3.22135400009824,1.14075483509418,1.01847051465113,0.469380496577004,2.51259386162724,2.38043640886014,1.36593553500459,4.57141917907954,2.6575762757853,2.71073106717728,0.983179888294428,0.863424909329478,0.723245292907558,0,0,0.491764273019036,0.275936746304732,6.26147300952389,6.68106613575558,0,1.26235463602186,4.41711507182759,5.46614242015294,7.10897212518236,2.86762557543062,4.01037613348309,5.37845408498782,2.42886421004937,4.9683495844923,3.95287777946523,5.14114106274891,1.41940085208269,1.06839362200353,2.76907830901079,2.63952196756057,1.32745138339963,0.485561272309963,0,0.377210159511796,0.590603785761546,2.15204603560749,1.03371317267288,1.09060118843252,1.78248689192361,1.26414703174326,2.10837217149998,0,3.06395645178409,6.48219938512717,5.56242340265844,5.35842587578981,3.19212420556092,4.28085162244969,3.1264313914403,4.87143918583359,0.704015124191131,0.21183207086382,4.19003956304428,1.48397627647332,2.26050197374268,1.38719727334758,1.19372344003136,1.14898629821543,2.62332752966866,7.97328798645192,0.170870880797853,0.619160603889667,0.370389054739423,0.188368457004691,0,0,0,0,0,0,5.852215881251,4.06638934253697,3.24016022465404,1.67270636811575,2.40198820120795,1.07891477107857,1.90102948168273,1.30877970992015,0.90730481304255,1.24267862617385,0,14.204071874178,10.5893433892542,16.5283510092441,11.6243841129958,10.4752797804282,8.33236394384853,2.47388331203505,0.943734099831398,0.241584120826006,0,0,1.82452693761148,0.718976700153791,0.129920822977795,0.179026695667481,0.39736270956253,0.480781798079875,0.295379054349154,0,0.228620419965,0.302478555410522,0,0,0.350630706544707,0.906921534460845,0.221985953374065,0,0.167884616364078,0.19318959403219,1.12609485270709,0.73260649706906,0.643105137237198,2.00628841614145,4.51801474093653,3.22227665555024,1.14579102687879,2.06223818812425,4.11049511862385,2.2661816921691,1.35004500046361,1.80128481289688,3.62513927187364,2.5888015587591,7.9916257639816,12.369771075432,5.9756762013947,2.67417388775123,5.03071590307158,2.94149613520023,1.77797382241292,3.09052585858341,3.85103051510178,3.28506375292937,3.29523089857312,2.64076877940507,2.24739617927718,3.13723246783859,2.46972516509137,1.42888107384922,2.66533949673168,2.89363830695558,3.29668720642645,2.20798380201596,1.71434626192708,1.95223386775271,2.38436189947321,3.48831399917588,2.35273451038327,1.94613598150856,3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| |||
|short_description=p1@Stox2 | |||
}} |
Revision as of 21:24, 3 August 2015
Short description: | p1@Stox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Stox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3678 |
Association with transcript: | 17bp_to_ENSMUST00000079195, NM_001114311, uc009lqw.2, uc009lqx.2_5end |
EntrezGene: | 71069 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.00e-16 | 44 |
neurectodermal cell | 1.00e-16 | 44 |
neuron | 1.84e-16 | 33 |
neuronal stem cell | 1.84e-16 | 33 |
neuroblast | 1.84e-16 | 33 |
electrically signaling cell | 1.84e-16 | 33 |
neural cell | 2.92e-16 | 43 |
CNS neuron (sensu Vertebrata) | 1.29e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.29e-13 | 23 |
electrically responsive cell | 1.64e-11 | 39 |
electrically active cell | 1.64e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.97e-27 | 73 |
ectoderm-derived structure | 2.54e-26 | 95 |
ectoderm | 2.54e-26 | 95 |
presumptive ectoderm | 2.54e-26 | 95 |
nervous system | 4.84e-25 | 75 |
neurectoderm | 9.86e-24 | 64 |
neural plate | 9.86e-24 | 64 |
presumptive neural plate | 9.86e-24 | 64 |
structure with developmental contribution from neural crest | 3.06e-22 | 92 |
ecto-epithelium | 1.38e-21 | 73 |
regional part of nervous system | 3.16e-18 | 54 |
neural tube | 2.24e-17 | 52 |
neural rod | 2.24e-17 | 52 |
future spinal cord | 2.24e-17 | 52 |
neural keel | 2.24e-17 | 52 |
pre-chordal neural plate | 5.46e-17 | 49 |
brain | 4.02e-14 | 47 |
future brain | 4.02e-14 | 47 |
regional part of brain | 1.11e-13 | 46 |
anterior neural tube | 1.44e-12 | 40 |
regional part of forebrain | 5.28e-12 | 39 |
forebrain | 5.28e-12 | 39 |
future forebrain | 5.28e-12 | 39 |
gray matter | 2.04e-11 | 34 |
brain grey matter | 1.52e-08 | 29 |
regional part of telencephalon | 1.52e-08 | 29 |
telencephalon | 1.52e-08 | 29 |
embryo | 1.37e-07 | 320 |