FFCP PHASE1:Mm9::chr19:46647549..46647572,-: Difference between revisions
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{{FFCP|EntrezGene=56350|HGNC=|UniProt=Q9WUL7,Q543P7|association_with_transcript=2bp_to_ENSMUST00000026009,NM_019718,uc008htt.1_5end|description=CAGE_peak_2_at_Arl3_5end|id=chr19:46647549..46647572,-|ontology_enrichment_celltype=CL:0002319!5.87e-11!43;CL:0000221!6.52e-11!44;CL:0000133!6.52e-11!44;CL:0000117!7.48e-11!23;CL:0000337!7.48e-11!23;CL:0000055!9.86e-11!50;CL:0000393!1.44e-08!39;CL:0000211!1.44e-08!39;CL:0000540!2.96e-08!33;CL:0000047!2.96e-08!33;CL:0000031!2.96e-08!33;CL:0000404!2.96e-08!33|ontology_enrichment_celltype_v019_2=CL:0002319,4.04e-11,43;CL:0000221,4.49e-11,44;CL:0000133,4.49e-11,44;CL:0000117,4.67e-11,23;CL:0000337,4.67e-11,23;CL:0000393,1.01e-08,39;CL:0000211,1.01e-08,39;CL:0000540,2.11e-08,33;CL:0000047,2.11e-08,33;CL:0000031,2.11e-08,33;CL:0000404,2.11e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!6.03e-23!73;UBERON:0005743!6.03e-23!73;UBERON:0000073!6.18e-22!75;UBERON:0001016!6.18e-22!75;UBERON:0001049!3.20e-20!52;UBERON:0005068!3.20e-20!52;UBERON:0006241!3.20e-20!52;UBERON:0007135!3.20e-20!52;UBERON:0002346!3.68e-20!71;UBERON:0003075!3.68e-20!71;UBERON:0007284!3.68e-20!71;UBERON:0000955!4.87e-19!50;UBERON:0006238!4.87e-19!50;UBERON:0000033!7.12e-19!63;UBERON:0002616!1.81e-18!49;UBERON:0004121!1.92e-18!102;UBERON:0000924!1.92e-18!102;UBERON:0006601!1.92e-18!102;UBERON:0003056!9.62e-17!49;UBERON:0003080!1.21e-15!40;UBERON:0002780!2.78e-15!39;UBERON:0001890!2.78e-15!39;UBERON:0006240!2.78e-15!39;UBERON:0002020!1.78e-13!34;UBERON:0002791!6.88e-11!29;UBERON:0003528!6.88e-11!29;UBERON:0001893!6.88e-11!29;UBERON:0000153!3.47e-09!94;UBERON:0007811!3.21e-08!86;UBERON:0000025!3.86e-08!114;UBERON:0000956!7.26e-08!21;UBERON:0001869!7.26e-08!21;UBERON:0000203!7.26e-08!21;UBERON:0004111!2.81e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.58e-23,73;UBERON:0001016,3.11e-22,75;UBERON:0000073,1.26e-21,54;UBERON:0001049,1.60e-20,52;UBERON:0005068,1.60e-20,52;UBERON:0006241,1.60e-20,52;UBERON:0007135,1.60e-20,52;UBERON:0002346,1.71e-20,64;UBERON:0003075,1.71e-20,64;UBERON:0007284,1.71e-20,64;UBERON:0004121,2.41e-18,95;UBERON:0000924,2.41e-18,95;UBERON:0006601,2.41e-18,95;UBERON:0000955,1.19e-17,47;UBERON:0006238,1.19e-17,47;UBERON:0010314,1.85e-17,92;UBERON:0002616,4.41e-17,46;UBERON:0003056,5.64e-17,49;UBERON:0010371,6.69e-16,73;UBERON:0003080,7.59e-16,40;UBERON:0002780,1.78e-15,39;UBERON:0001890,1.78e-15,39;UBERON:0006240,1.78e-15,39;UBERON:0002020,1.25e-13,34;UBERON:0003528,5.43e-11,29;UBERON:0002791,5.43e-11,29;UBERON:0001893,5.43e-11,29;UBERON:0000956,6.61e-08,21;UBERON:0001869,6.61e-08,21;UBERON:0000203,6.61e-08,21;UBERON:0000025,9.76e-08,114;UBERON:0004111,8.06e-07,122|phase1_expression=1.92178616525753,0.348975407639361,0,0,0,0.33575854382378,0,0.129123323441576,0,0,0,0,0.342401459862411,0.262261207256992,0.333109761815663,0.202475267389826,0,0,0.274228867211478,0,5.44277056966847,2.18440092641948,3.13439746966722,0.319984845586813,0.22940928106717,0,0,0.215471232685889,0,0,0,0,0,0,0,0.498703936075477,0,0,0.7813353445238,1.0470474879476,1.76469446409304,0,0.971020706062307,1.88845226963366,2.43304634926835,4.58866880404204,1.56478268869608,12.8634842264463,8.34807494390993,13.2212331370513,6.99932108126813,14.3752564364972,0,0.725362142011344,0.672187598284928,3.34437266846731,2.57880095944881,2.57836046138721,3.64169629547276,1.05798195854407,7.60597684207415,8.13226876965917,5.33576877666684,3.5995988691256,0,1.4209602298922,6.89080254192331,16.1371688235053,6.32506635081714,4.3201900266141,4.83747411108179,9.71213346972932,10.6016899656774,4.04219637409348,10.3513108699695,9.19218786610021,4.40463523997555,6.63974158042976,9.5236050618871,3.56092976871523,9.69769022185542,4.68822033501084,4.74611098302348,9.56696437053856,7.48711414106369,4.12480019663135,9.25415925194169,4.65998614563251,0.530083353332288,2.11600368298999,2.02905142091174,0.860423876981386,0,2.15881276655127,0.649776417447669,1.34408066129201,2.24711072210803,10.9075406449957,6.49465011507172,10.9535268098205,2.39433813620357,3.84979432242953,2.54805239706646,0,1.29894624606728,2.28023878927589,0.505524445014783,2.51204535381932,0.517875767294343,5.64080128446334,2.25530924795977,1.82679286987285,2.07553947530453,2.41156224884196,1.99900802130698,3.39299796590124,0.247194967734374,2.31358971071859,0.884610551949874,2.58826959915855,1.32504911076236,1.93950101254089,0,4.9772735491963,3.77004072264219,0.255457055208591,0.838705871541442,0,0.508280908292259,4.34392854273986,2.28750301409313,5.27748278874031,5.38855392596057,2.81287003063364,5.40248915854856,4.86723789203273,2.95334155165917,1.11966273549084,1.0108910337347,2.94618598241064,3.513251959993,2.98872735763515,5.22180176435513,3.91832526372859,2.85753296435577,2.69038812598185,4.49768277886698,1.55222022443409,3.23351989399263,3.21480336285293,4.92663147659057,4.82230611340665,2.50242524303038,3.1342694986995,2.88094990971121,3.38358253591438,0,0.257347907114715,0.568326998791185,1.65700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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56350 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9WUL7,uniprot:Q543P7 | |||
|association_with_transcript=2bp_to_ENSMUST00000026009,NM_019718,uc008htt.1_5end | |||
|cluster_id=chr19:46647549..46647572,- | |||
|description=CAGE_peak_2_at_Arl3_5end | |||
|id=chr19:46647549..46647572,- | |||
|ontology_enrichment_celltype=CL:0002319!5.87e-11!43;CL:0000221!6.52e-11!44;CL:0000133!6.52e-11!44;CL:0000117!7.48e-11!23;CL:0000337!7.48e-11!23;CL:0000055!9.86e-11!50;CL:0000393!1.44e-08!39;CL:0000211!1.44e-08!39;CL:0000540!2.96e-08!33;CL:0000047!2.96e-08!33;CL:0000031!2.96e-08!33;CL:0000404!2.96e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.04e-11,43;CL:0000221,4.49e-11,44;CL:0000133,4.49e-11,44;CL:0000117,4.67e-11,23;CL:0000337,4.67e-11,23;CL:0000393,1.01e-08,39;CL:0000211,1.01e-08,39;CL:0000540,2.11e-08,33;CL:0000047,2.11e-08,33;CL:0000031,2.11e-08,33;CL:0000404,2.11e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.03e-23!73;UBERON:0005743!6.03e-23!73;UBERON:0000073!6.18e-22!75;UBERON:0001016!6.18e-22!75;UBERON:0001049!3.20e-20!52;UBERON:0005068!3.20e-20!52;UBERON:0006241!3.20e-20!52;UBERON:0007135!3.20e-20!52;UBERON:0002346!3.68e-20!71;UBERON:0003075!3.68e-20!71;UBERON:0007284!3.68e-20!71;UBERON:0000955!4.87e-19!50;UBERON:0006238!4.87e-19!50;UBERON:0000033!7.12e-19!63;UBERON:0002616!1.81e-18!49;UBERON:0004121!1.92e-18!102;UBERON:0000924!1.92e-18!102;UBERON:0006601!1.92e-18!102;UBERON:0003056!9.62e-17!49;UBERON:0003080!1.21e-15!40;UBERON:0002780!2.78e-15!39;UBERON:0001890!2.78e-15!39;UBERON:0006240!2.78e-15!39;UBERON:0002020!1.78e-13!34;UBERON:0002791!6.88e-11!29;UBERON:0003528!6.88e-11!29;UBERON:0001893!6.88e-11!29;UBERON:0000153!3.47e-09!94;UBERON:0007811!3.21e-08!86;UBERON:0000025!3.86e-08!114;UBERON:0000956!7.26e-08!21;UBERON:0001869!7.26e-08!21;UBERON:0000203!7.26e-08!21;UBERON:0004111!2.81e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.58e-23,73;UBERON:0001016,3.11e-22,75;UBERON:0000073,1.26e-21,54;UBERON:0001049,1.60e-20,52;UBERON:0005068,1.60e-20,52;UBERON:0006241,1.60e-20,52;UBERON:0007135,1.60e-20,52;UBERON:0002346,1.71e-20,64;UBERON:0003075,1.71e-20,64;UBERON:0007284,1.71e-20,64;UBERON:0004121,2.41e-18,95;UBERON:0000924,2.41e-18,95;UBERON:0006601,2.41e-18,95;UBERON:0000955,1.19e-17,47;UBERON:0006238,1.19e-17,47;UBERON:0010314,1.85e-17,92;UBERON:0002616,4.41e-17,46;UBERON:0003056,5.64e-17,49;UBERON:0010371,6.69e-16,73;UBERON:0003080,7.59e-16,40;UBERON:0002780,1.78e-15,39;UBERON:0001890,1.78e-15,39;UBERON:0006240,1.78e-15,39;UBERON:0002020,1.25e-13,34;UBERON:0003528,5.43e-11,29;UBERON:0002791,5.43e-11,29;UBERON:0001893,5.43e-11,29;UBERON:0000956,6.61e-08,21;UBERON:0001869,6.61e-08,21;UBERON:0000203,6.61e-08,21;UBERON:0000025,9.76e-08,114;UBERON:0004111,8.06e-07,122 | |||
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| |||
|short_description=p2@Arl3 | |||
}} |
Revision as of 05:53, 4 August 2015
Short description: | p2@Arl3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Arl3_5end |
Coexpression cluster: | NA |
Association with transcript: | 2bp_to_ENSMUST00000026009, NM_019718, uc008htt.1_5end |
EntrezGene: | 56350 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.04e-11 | 43 |
ectodermal cell | 4.49e-11 | 44 |
neurectodermal cell | 4.49e-11 | 44 |
CNS neuron (sensu Vertebrata) | 4.67e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.67e-11 | 23 |
electrically responsive cell | 1.01e-08 | 39 |
electrically active cell | 1.01e-08 | 39 |
neuron | 2.11e-08 | 33 |
neuronal stem cell | 2.11e-08 | 33 |
neuroblast | 2.11e-08 | 33 |
electrically signaling cell | 2.11e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.58e-23 | 73 |
nervous system | 3.11e-22 | 75 |
regional part of nervous system | 1.26e-21 | 54 |
neural tube | 1.60e-20 | 52 |
neural rod | 1.60e-20 | 52 |
future spinal cord | 1.60e-20 | 52 |
neural keel | 1.60e-20 | 52 |
neurectoderm | 1.71e-20 | 64 |
neural plate | 1.71e-20 | 64 |
presumptive neural plate | 1.71e-20 | 64 |
ectoderm-derived structure | 2.41e-18 | 95 |
ectoderm | 2.41e-18 | 95 |
presumptive ectoderm | 2.41e-18 | 95 |
brain | 1.19e-17 | 47 |
future brain | 1.19e-17 | 47 |
structure with developmental contribution from neural crest | 1.85e-17 | 92 |
regional part of brain | 4.41e-17 | 46 |
pre-chordal neural plate | 5.64e-17 | 49 |
ecto-epithelium | 6.69e-16 | 73 |
anterior neural tube | 7.59e-16 | 40 |
regional part of forebrain | 1.78e-15 | 39 |
forebrain | 1.78e-15 | 39 |
future forebrain | 1.78e-15 | 39 |
gray matter | 1.25e-13 | 34 |
brain grey matter | 5.43e-11 | 29 |
regional part of telencephalon | 5.43e-11 | 29 |
telencephalon | 5.43e-11 | 29 |
cerebral cortex | 6.61e-08 | 21 |
cerebral hemisphere | 6.61e-08 | 21 |
pallium | 6.61e-08 | 21 |
tube | 9.76e-08 | 114 |
anatomical conduit | 8.06e-07 | 122 |