FFCP PHASE1:Mm9::chr5:5783629..5783638,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene= | |EntrezGene= | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2147 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-9bp_to_uc008wje.1_5end | |association_with_transcript=-9bp_to_uc008wje.1_5end | ||
|cluster_id=chr5:5783629..5783638,- | |||
|description=CAGE_peak_1_at_uc008wje.1_5end | |description=CAGE_peak_1_at_uc008wje.1_5end | ||
|id=chr5:5783629..5783638,- | |id=chr5:5783629..5783638,- | ||
|ontology_enrichment_celltype=CL:0000055!1.38e-23!50;CL:0000548!1.46e-23!115;CL:0000004!1.46e-23!115;CL:0000255!1.46e-23!115;CL:0002321!3.58e-23!70;CL:0000220!3.58e-23!70;CL:0002371!3.03e-21!118;CL:0000221!3.53e-20!44;CL:0000133!3.53e-20!44;CL:0000393!5.84e-20!39;CL:0000211!5.84e-20!39;CL:0002319!6.83e-20!43;CL:0000144!3.03e-19!121;CL:0000012!3.03e-19!121;CL:0000540!2.27e-16!33;CL:0000047!2.27e-16!33;CL:0000031!2.27e-16!33;CL:0000404!2.27e-16!33;CL:0000723!1.19e-13!91;CL:0000048!1.19e-13!91;CL:0000034!1.29e-12!97;CL:0000117!1.10e-11!23;CL:0000337!1.10e-11!23 | |ontology_enrichment_celltype=CL:0000055!1.38e-23!50;CL:0000548!1.46e-23!115;CL:0000004!1.46e-23!115;CL:0000255!1.46e-23!115;CL:0002321!3.58e-23!70;CL:0000220!3.58e-23!70;CL:0002371!3.03e-21!118;CL:0000221!3.53e-20!44;CL:0000133!3.53e-20!44;CL:0000393!5.84e-20!39;CL:0000211!5.84e-20!39;CL:0002319!6.83e-20!43;CL:0000144!3.03e-19!121;CL:0000012!3.03e-19!121;CL:0000540!2.27e-16!33;CL:0000047!2.27e-16!33;CL:0000031!2.27e-16!33;CL:0000404!2.27e-16!33;CL:0000723!1.19e-13!91;CL:0000048!1.19e-13!91;CL:0000034!1.29e-12!97;CL:0000117!1.10e-11!23;CL:0000337!1.10e-11!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.43e-23,70;CL:0000221,3.51e-20,44;CL:0000133,3.51e-20,44;CL:0000393,5.81e-20,39;CL:0000211,5.81e-20,39;CL:0002319,6.80e-20,43;CL:0000540,2.26e-16,33;CL:0000047,2.26e-16,33;CL:0000031,2.26e-16,33;CL:0000404,2.26e-16,33;CL:0000723,1.19e-13,91;CL:0000048,1.19e-13,91;CL:0000034,1.30e-12,97;CL:0000117,1.09e-11,23;CL:0000337,1.09e-11,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.65e-20!75;UBERON:0001016!3.65e-20!75;UBERON:0001017!5.63e-19!73;UBERON:0005743!5.63e-19!73;UBERON:0004121!5.02e-13!102;UBERON:0000924!5.02e-13!102;UBERON:0006601!5.02e-13!102;UBERON:0001049!4.92e-10!52;UBERON:0005068!4.92e-10!52;UBERON:0006241!4.92e-10!52;UBERON:0007135!4.92e-10!52;UBERON:0002020!5.00e-10!34;UBERON:0000955!1.11e-09!50;UBERON:0006238!1.11e-09!50;UBERON:0002616!1.86e-09!49;UBERON:0002346!2.12e-08!71;UBERON:0003075!2.12e-08!71;UBERON:0007284!2.12e-08!71;UBERON:0002791!5.36e-08!29;UBERON:0003528!5.36e-08!29;UBERON:0001893!5.36e-08!29;UBERON:0000033!2.23e-07!63;UBERON:0003080!2.72e-07!40;UBERON:0002780!3.72e-07!39;UBERON:0001890!3.72e-07!39;UBERON:0006240!3.72e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.63e-20,75;UBERON:0001017,5.60e-19,73;UBERON:0004121,2.30e-13,95;UBERON:0000924,2.30e-13,95;UBERON:0006601,2.30e-13,95;UBERON:0000073,1.90e-11,54;UBERON:0001049,4.91e-10,52;UBERON:0005068,4.91e-10,52;UBERON:0006241,4.91e-10,52;UBERON:0007135,4.91e-10,52;UBERON:0002020,4.99e-10,34;UBERON:0011216,8.17e-10,194;UBERON:0002346,8.17e-09,64;UBERON:0003075,8.17e-09,64;UBERON:0007284,8.17e-09,64;UBERON:0000955,3.09e-08,47;UBERON:0006238,3.09e-08,47;UBERON:0010314,4.63e-08,92;UBERON:0002616,5.07e-08,46;UBERON:0003528,5.35e-08,29;UBERON:0002791,5.35e-08,29;UBERON:0001893,5.35e-08,29;UBERON:0003080,2.72e-07,40;UBERON:0002780,3.72e-07,39;UBERON:0001890,3.72e-07,39;UBERON:0006240,3.72e-07,39;UBERON:0010371,5.98e-07,73 | |||
|phase1_expression=20.8193501236232,16.40184415905,6.82498859084304,17.845388467103,29.5528480668345,21.8243053485457,79.6619104430743,88.8368465278045,11.403886494285,330.030982114011,7.19115466547121,350.758183102494,0.684802919724823,89.6933328818913,0.999329285446988,1.01237633694913,0.699561878128147,3.47008381894061,0.685572168028694,3.81950686618227,52.4717100232101,5.06383851124515,3.13439746966722,59.5171812791473,53.2229532075834,13.7815671387605,17.6612418425221,23.270893130076,46.745761186268,7.56090389279792,22.6165120868411,39.3719017544971,16.6067492647834,31.6963362030877,0.288851619751275,1.32987716286794,1.42918549383658,0.418531630736908,2.3440060335714,0.523523743973798,2.35292595212406,0,0,166.057902909786,119.726155770247,84.7985994986969,11.7358701652206,9.59310688073965,23.9457939180574,13.6100929351998,21.4179225086805,24.4379359420452,2.18117387875057,2.17608642603403,4.7053131879945,45.5349201783626,37.2493471920384,35.5813743671435,26.0988234508881,41.7902873624906,18.3811107016792,21.6860500524245,29.3467282716676,6.29929802096979,16.8107281636386,7.8152812644071,8.38880309451533,10.373894243682,34.5286408987231,49.9521971827255,40.5927175408167,22.5664277679005,25.1790136684839,38.3396201542806,39.9675614146046,16.5459381589804,70.4741638396088,46.6058784010935,66.9724484997221,40.4890903331695,44.3715071471687,33.8593690861894,46.0651948352279,44.4582461925027,51.6458077485618,56.8633169964179,32.8878582645928,41.567076419042,44.2240969065795,76.4784188280669,9.27566363845369,5.16254326188832,42.8381940235883,71.2408212961919,9.09686984426737,4.92829575807069,40.728881838208,67.831268386067,83.6510934821237,36.0406366000547,12.9575946194546,8.98285341900225,5.09610479413291,7.11066703153331,3.46385665617943,4.05375784760158,1.51657333504435,86.0946453081712,6.21450920753212,4.00793775475027,4.8575891494518,3.95805121805784,2.7673859670727,3.91878865436819,3.64524992120685,4.39833069653864,4.20231445148436,4.33798070759735,3.5384422077995,3.23533699894818,2.65009822152472,5.81850303762267,1.86391761218122,3.22058876712702,5.23616767033638,1.53274233125155,1.55759661857696,0,1.77898317902291,6.29120685500255,7.77751024791665,3.64397621127307,6.77914848749878,6.64860189058859,6.85700547046548,6.81413304884582,1.42575109390443,2.11491850037158,1.76905930903572,2.94618598241064,5.20481771850815,2.98872735763515,4.68161537493908,2.86339153887859,1.15662048557257,1.7935920839879,2.81105173679186,3.88055056108524,3.66465587985832,3.9712276835242,2.63926686245923,2.84954452155847,2.78047249225598,2.78601733217733,2.26360350048738,2.7864797354589,0,0.51469581422943,5.39910648851626,3.72826390563903,4.92504725960302,4.32148947506436,3.78791576936336,3.34499193970586,2.46827380619805,2.79040733700489,2.68273401399619,2.45207218971056,1.6455984991348,3.77585167381919,3.24275238183423,4.23979963533464,5.92785311285837,3.22095405024892,4.41608891984667,3.70456604565424,2.97376904685418,66.6415427992132,7.89166526980366,3.94802342162745,3.35055399437443,1.81515172161008,4.22518283305254,4.75564065281398,6.16887780007865,4.6115707322723,3.77002813200404,4.97391180102877,3.31438948102504,2.69645822596266,2.37751854862164,1.99141273254367,4.36236172192088,2.85621281524322,3.38123207019241,3.05476991767971,2.90928730751439,2.59502533594179,2.21327879934901,6.19962621514329,4.39596437955849,2.22114895059241,11.5616524563988,5.5058884886311,4.52085688760367,4.94696647246678,3.04290182082754,2.41177159752417,2.29163266603278,1.72617682470486,2.91843408195064,3.29473695825698,2.87536413054709,3.34926852901653,4.68056509671841,7.32478746046624,6.09951205974501,1.92977408545347,2.95605104266567,3.60033682363921,4.88894929326078,4.07388205860452,3.98973422090454,8.04030035720716,1.42826184531608,0.780534591431195,1.89162172927429,1.99318220683897,2.71073106717728,5.57135270033509,3.62638461918381,1.73578870297814,30.1582567878545,53.3027570142335,2.95058563811422,3.58717770196152,7.22477654945064,7.85318300167761,163.115270649792,3.28212205365685,36.2834452328695,34.7490482424008,44.8080667284222,42.5364460355543,39.8809626607485,28.0245765480944,42.5051236758639,51.4370309923909,54.1544255786737,8.03303291054518,3.69044221541498,2.13678724400706,0.488660878060728,4.61916344323099,0,3.64170954232472,3.62788268357701,2.64047111658257,10.9261700365886,2.15204603560749,2.58428293168221,5.08947221268508,3.56497378384721,1.58018378967908,2.10837217149998,0,5.10659408630682,4.86164953884538,2.71653235943784,6.00143698088458,3.72414490648775,2.49716344642899,3.1264313914403,5.17590413494819,2.81606049676452,2.96564899209348,6.61585194164886,0.98931751764888,1.61464426695906,2.11095237248546,2.98430860007841,2.46211349617592,3.49777003955821,5.7481843623258,4.61351378154202,1.44470807574256,3.88908507476395,2.44878994106098,3.69074414846768,4.34678529092393,1.5298058699447,1.39951452323658,2.21119958087078,1.90934123603023,3.16335993581135,1.42323626988794,2.48412283890143,4.18176592028937,2.83871332870031,2.15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| ||
|short_description=p1@uc008wje.1 | |short_description=p1@uc008wje.1 | ||
}} | }} |
Latest revision as of 11:51, 4 August 2015
Short description: | p1@uc008wje.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc008wje.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2147 |
Association with transcript: | -9bp_to_uc008wje.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.43e-23 | 70 |
ectodermal cell | 3.51e-20 | 44 |
neurectodermal cell | 3.51e-20 | 44 |
electrically responsive cell | 5.81e-20 | 39 |
electrically active cell | 5.81e-20 | 39 |
neural cell | 6.80e-20 | 43 |
neuron | 2.26e-16 | 33 |
neuronal stem cell | 2.26e-16 | 33 |
neuroblast | 2.26e-16 | 33 |
electrically signaling cell | 2.26e-16 | 33 |
somatic stem cell | 1.19e-13 | 91 |
multi fate stem cell | 1.19e-13 | 91 |
stem cell | 1.30e-12 | 97 |
CNS neuron (sensu Vertebrata) | 1.09e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.09e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.63e-20 | 75 |
central nervous system | 5.60e-19 | 73 |
ectoderm-derived structure | 2.30e-13 | 95 |
ectoderm | 2.30e-13 | 95 |
presumptive ectoderm | 2.30e-13 | 95 |
regional part of nervous system | 1.90e-11 | 54 |
neural tube | 4.91e-10 | 52 |
neural rod | 4.91e-10 | 52 |
future spinal cord | 4.91e-10 | 52 |
neural keel | 4.91e-10 | 52 |
gray matter | 4.99e-10 | 34 |
organ system subdivision | 8.17e-10 | 194 |
neurectoderm | 8.17e-09 | 64 |
neural plate | 8.17e-09 | 64 |
presumptive neural plate | 8.17e-09 | 64 |
brain | 3.09e-08 | 47 |
future brain | 3.09e-08 | 47 |
structure with developmental contribution from neural crest | 4.63e-08 | 92 |
regional part of brain | 5.07e-08 | 46 |
brain grey matter | 5.35e-08 | 29 |
regional part of telencephalon | 5.35e-08 | 29 |
telencephalon | 5.35e-08 | 29 |
anterior neural tube | 2.72e-07 | 40 |
regional part of forebrain | 3.72e-07 | 39 |
forebrain | 3.72e-07 | 39 |
future forebrain | 3.72e-07 | 39 |
ecto-epithelium | 5.98e-07 | 73 |