FFCP PHASE1:Mm9::chr11:116060320..116060351,-: Difference between revisions
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{{FFCP|EntrezGene=11430|HGNC=|UniProt=Q8BYC3|association_with_transcript=7bp_to_ENSMUST00000066587,NM_015729,uc007mkl.1,uc007mkm.1_5end|description=CAGE_peak_3_at_Acox1_5end|id=chr11:116060320..116060351,-|ontology_enrichment_celltype=CL:0000117!2.97e-10!23;CL:0000337!2.97e-10!23;CL:0000540!3.04e-09!33;CL:0000047!3.04e-09!33;CL:0000031!3.04e-09!33;CL:0000404!3.04e-09!33;CL:0000221!2.59e-07!44;CL:0000133!2.59e-07!44;CL:0002319!5.45e-07!43|ontology_enrichment_celltype_v019_2=CL:0000117,5.59e-11,23;CL:0000337,5.59e-11,23;CL:0000540,2.57e-09,33;CL:0000047,2.57e-09,33;CL:0000031,2.57e-09,33;CL:0000404,2.57e-09,33;CL:0000221,1.77e-07,44;CL:0000133,1.77e-07,44;CL:0002319,3.90e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.27e-13!102;UBERON:0000924!2.27e-13!102;UBERON:0006601!2.27e-13!102;UBERON:0002346!6.63e-13!71;UBERON:0003075!6.63e-13!71;UBERON:0007284!6.63e-13!71;UBERON:0000073!9.32e-13!75;UBERON:0001016!9.32e-13!75;UBERON:0001017!1.43e-12!73;UBERON:0005743!1.43e-12!73;UBERON:0000033!2.30e-12!63;UBERON:0001049!1.84e-11!52;UBERON:0005068!1.84e-11!52;UBERON:0006241!1.84e-11!52;UBERON:0007135!1.84e-11!52;UBERON:0003056!6.45e-11!49;UBERON:0000955!1.33e-10!50;UBERON:0006238!1.33e-10!50;UBERON:0002616!4.89e-10!49;UBERON:0002020!2.79e-09!34;UBERON:0003080!6.09e-08!40;UBERON:0002780!1.88e-07!39;UBERON:0001890!1.88e-07!39;UBERON:0006240!1.88e-07!39;UBERON:0002791!2.92e-07!29;UBERON:0003528!2.92e-07!29;UBERON:0001893!2.92e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.49e-15,64;UBERON:0003075,1.49e-15,64;UBERON:0007284,1.49e-15,64;UBERON:0004121,2.86e-15,95;UBERON:0000924,2.86e-15,95;UBERON:0006601,2.86e-15,95;UBERON:0010371,3.57e-14,73;UBERON:0001016,4.09e-13,75;UBERON:0000073,5.16e-13,54;UBERON:0001017,6.51e-13,73;UBERON:0001049,2.56e-12,52;UBERON:0005068,2.56e-12,52;UBERON:0006241,2.56e-12,52;UBERON:0007135,2.56e-12,52;UBERON:0003056,1.88e-11,49;UBERON:0000955,2.87e-10,47;UBERON:0006238,2.87e-10,47;UBERON:0002020,6.31e-10,34;UBERON:0002616,1.13e-09,46;UBERON:0003080,2.98e-08,40;UBERON:0003528,9.70e-08,29;UBERON:0002791,9.70e-08,29;UBERON:0001893,9.70e-08,29;UBERON:0002780,9.98e-08,39;UBERON:0001890,9.98e-08,39;UBERON:0006240,9.98e-08,39;UBERON:0000160,1.05e-07,31;UBERON:0010314,3.52e-07,92;UBERON:0011216,7.46e-07,194|phase1_expression=0.80074423552397,5.23463111459042,6.3699893514535,6.65421264875026,5.50985302940982,2.68606835059024,0.700837921786577,0,0.281577444303333,0.234064526321993,0.171217968225505,0,0.513602189793617,0,0.333109761815663,0,0,0.157731082679119,0,0.42438965179803,0.850432901510698,0.595745707205312,0.261199789138935,0.47997726838022,0.91763712426868,3.44539178469012,2.15380998079537,2.58565479223067,2.09025761402011,1.51218077855958,0,0.635030673459631,0,0,0.866554859253824,1.49611180822643,1.22501613757421,0,0,0.523523743973798,1.17646297606203,0,0,0.377690453926732,0.709638518536602,1.10128051297009,0,1.52617609466313,1.09843091367236,1.55543919259427,0.279972843250725,1.43752564364972,0.335565212115473,1.45072428402269,1.00828139742739,0.257259436035947,0.286533439938757,0,6.06949382578793,3.1739458756322,1.26766280701236,0.677689064138264,0.889294796111139,0.449949858640699,0,0.7104801149461,0.898800331555214,0.384218305321555,2.07379224616955,1.89008313664367,1.47227472945967,2.57085885963423,3.75476519617743,3.06226998037385,3.35459148563827,4.5960939330501,2.20231761998777,2.93680877595932,2.61131106535614,6.3305418110493,4.20843160571084,3.12548022334056,3.35019598801657,2.25105044012672,3.51435969886663,2.94628585473668,3.41692033917847,2.23679334990361,1.59025005999687,1.43585964202892,1.44932244350839,0,2.03991400112325,0,0,2.68816132258401,0.280888840263504,0.340860645156116,0,0,2.67602497575693,0,0,0,1.08245520505607,0.253359865475099,0.505524445014783,1.37020655662872,0,1.33597925158342,0.867426633830679,1.21786191324856,1.84492397804847,0.60289056221049,0.940709657085638,0.502666365318702,1.73036477414062,0.86759614151947,0,0.323533699894818,0.441683036920787,0,5.59175283654366,3.80615036115011,3.14170060220183,4.59822699375465,1.31796636956512,0.599902730993408,0.508280908292259,4.04434726393021,2.74500361691176,3.64397621127307,2.25971616249959,2.30143911597297,2.70124457927428,1.78465389374533,1.2220723662038,0.248813941220186,2.27450482590307,1.89397670297827,2.47228841629137,1.60931473103431,2.34080768746954,2.71268672104287,2.9255694635071,2.0498195245576,3.5606655332697,5.43277078551933,0.862271971731369,1.13463648100692,0,0.876782929710299,1.66828349535359,1.0447564995665,0.823128545631774,0.796137067273973,1.40442637462647,0.257347907114715,0.284163499395593,0.207125772535502,0.469052119962192,0.900310307305074,1.18372367792605,1.57411385397923,0.308534225774757,0.697601834251224,0.536546802799238,1.05088808130453,0.987359099480883,1.31333971263276,0.810688095458557,0.730999937126662,1.3173006917463,0.671032093801859,1.26173969138476,2.26390147234426,3.96502539580558,3.96675849995316,1.066441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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:11430 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8BYC3 | |||
|association_with_transcript=7bp_to_ENSMUST00000066587,NM_015729,uc007mkl.1,uc007mkm.1_5end | |||
|cluster_id=chr11:116060320..116060351,- | |||
|description=CAGE_peak_3_at_Acox1_5end | |||
|id=chr11:116060320..116060351,- | |||
|ontology_enrichment_celltype=CL:0000117!2.97e-10!23;CL:0000337!2.97e-10!23;CL:0000540!3.04e-09!33;CL:0000047!3.04e-09!33;CL:0000031!3.04e-09!33;CL:0000404!3.04e-09!33;CL:0000221!2.59e-07!44;CL:0000133!2.59e-07!44;CL:0002319!5.45e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.59e-11,23;CL:0000337,5.59e-11,23;CL:0000540,2.57e-09,33;CL:0000047,2.57e-09,33;CL:0000031,2.57e-09,33;CL:0000404,2.57e-09,33;CL:0000221,1.77e-07,44;CL:0000133,1.77e-07,44;CL:0002319,3.90e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.27e-13!102;UBERON:0000924!2.27e-13!102;UBERON:0006601!2.27e-13!102;UBERON:0002346!6.63e-13!71;UBERON:0003075!6.63e-13!71;UBERON:0007284!6.63e-13!71;UBERON:0000073!9.32e-13!75;UBERON:0001016!9.32e-13!75;UBERON:0001017!1.43e-12!73;UBERON:0005743!1.43e-12!73;UBERON:0000033!2.30e-12!63;UBERON:0001049!1.84e-11!52;UBERON:0005068!1.84e-11!52;UBERON:0006241!1.84e-11!52;UBERON:0007135!1.84e-11!52;UBERON:0003056!6.45e-11!49;UBERON:0000955!1.33e-10!50;UBERON:0006238!1.33e-10!50;UBERON:0002616!4.89e-10!49;UBERON:0002020!2.79e-09!34;UBERON:0003080!6.09e-08!40;UBERON:0002780!1.88e-07!39;UBERON:0001890!1.88e-07!39;UBERON:0006240!1.88e-07!39;UBERON:0002791!2.92e-07!29;UBERON:0003528!2.92e-07!29;UBERON:0001893!2.92e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,1.49e-15,64;UBERON:0003075,1.49e-15,64;UBERON:0007284,1.49e-15,64;UBERON:0004121,2.86e-15,95;UBERON:0000924,2.86e-15,95;UBERON:0006601,2.86e-15,95;UBERON:0010371,3.57e-14,73;UBERON:0001016,4.09e-13,75;UBERON:0000073,5.16e-13,54;UBERON:0001017,6.51e-13,73;UBERON:0001049,2.56e-12,52;UBERON:0005068,2.56e-12,52;UBERON:0006241,2.56e-12,52;UBERON:0007135,2.56e-12,52;UBERON:0003056,1.88e-11,49;UBERON:0000955,2.87e-10,47;UBERON:0006238,2.87e-10,47;UBERON:0002020,6.31e-10,34;UBERON:0002616,1.13e-09,46;UBERON:0003080,2.98e-08,40;UBERON:0003528,9.70e-08,29;UBERON:0002791,9.70e-08,29;UBERON:0001893,9.70e-08,29;UBERON:0002780,9.98e-08,39;UBERON:0001890,9.98e-08,39;UBERON:0006240,9.98e-08,39;UBERON:0000160,1.05e-07,31;UBERON:0010314,3.52e-07,92;UBERON:0011216,7.46e-07,194 | |||
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| |||
|short_description=p3@Acox1 | |||
}} |
Revision as of 11:52, 5 August 2015
Short description: | p3@Acox1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Acox1_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENSMUST00000066587, NM_015729, uc007mkl.1, uc007mkm.1_5end |
EntrezGene: | 11430 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.59e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.59e-11 | 23 |
neuron | 2.57e-09 | 33 |
neuronal stem cell | 2.57e-09 | 33 |
neuroblast | 2.57e-09 | 33 |
electrically signaling cell | 2.57e-09 | 33 |
ectodermal cell | 1.77e-07 | 44 |
neurectodermal cell | 1.77e-07 | 44 |
neural cell | 3.90e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 1.49e-15 | 64 |
neural plate | 1.49e-15 | 64 |
presumptive neural plate | 1.49e-15 | 64 |
ectoderm-derived structure | 2.86e-15 | 95 |
ectoderm | 2.86e-15 | 95 |
presumptive ectoderm | 2.86e-15 | 95 |
ecto-epithelium | 3.57e-14 | 73 |
nervous system | 4.09e-13 | 75 |
regional part of nervous system | 5.16e-13 | 54 |
central nervous system | 6.51e-13 | 73 |
neural tube | 2.56e-12 | 52 |
neural rod | 2.56e-12 | 52 |
future spinal cord | 2.56e-12 | 52 |
neural keel | 2.56e-12 | 52 |
pre-chordal neural plate | 1.88e-11 | 49 |
brain | 2.87e-10 | 47 |
future brain | 2.87e-10 | 47 |
gray matter | 6.31e-10 | 34 |
regional part of brain | 1.13e-09 | 46 |
anterior neural tube | 2.98e-08 | 40 |
brain grey matter | 9.70e-08 | 29 |
regional part of telencephalon | 9.70e-08 | 29 |
telencephalon | 9.70e-08 | 29 |
regional part of forebrain | 9.98e-08 | 39 |
forebrain | 9.98e-08 | 39 |
future forebrain | 9.98e-08 | 39 |
intestine | 1.05e-07 | 31 |
structure with developmental contribution from neural crest | 3.52e-07 | 92 |
organ system subdivision | 7.46e-07 | 194 |