FFCP PHASE1:Mm9::chr18:36839007..36839034,-: Difference between revisions
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{{FFCP|EntrezGene=225372|HGNC=|UniProt=Q8R1C9,Q3UR23|association_with_transcript=0bp_to_ENSMUST00000001415,NM_146085,uc008enz.1_5end|description=CAGE_peak_3_at_Apbb3_5end|id=chr18:36839007..36839034,-|ontology_enrichment_celltype=CL:0000117!4.92e-08!23;CL:0000337!4.92e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.92e-09,23;CL:0000337,1.92e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!2.60e-13!34;UBERON:0001049!3.51e-13!52;UBERON:0005068!3.51e-13!52;UBERON:0006241!3.51e-13!52;UBERON:0007135!3.51e-13!52;UBERON:0002346!1.04e-11!71;UBERON:0003075!1.04e-11!71;UBERON:0007284!1.04e-11!71;UBERON:0000955!1.15e-11!50;UBERON:0006238!1.15e-11!50;UBERON:0002616!4.57e-11!49;UBERON:0001017!9.94e-11!73;UBERON:0005743!9.94e-11!73;UBERON:0002791!1.30e-10!29;UBERON:0003528!1.30e-10!29;UBERON:0001893!1.30e-10!29;UBERON:0000073!1.28e-09!75;UBERON:0001016!1.28e-09!75;UBERON:0003080!3.04e-09!40;UBERON:0000033!3.54e-09!63;UBERON:0002780!3.88e-09!39;UBERON:0001890!3.88e-09!39;UBERON:0006240!3.88e-09!39;UBERON:0003056!8.96e-08!49;UBERON:0007811!9.36e-08!86;UBERON:0002021!9.38e-08!10;UBERON:0000411!9.38e-08!10;UBERON:0001950!9.38e-08!10;UBERON:0000956!4.12e-07!21;UBERON:0001869!4.12e-07!21;UBERON:0000203!4.12e-07!21;UBERON:0004121!4.89e-07!102;UBERON:0000924!4.89e-07!102;UBERON:0006601!4.89e-07!102;UBERON:0000153!5.44e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.30e-15,34;UBERON:0000073,5.23e-15,54;UBERON:0001049,1.65e-14,52;UBERON:0005068,1.65e-14,52;UBERON:0006241,1.65e-14,52;UBERON:0007135,1.65e-14,52;UBERON:0001017,2.29e-12,73;UBERON:0003528,4.24e-12,29;UBERON:0002791,4.24e-12,29;UBERON:0001893,4.24e-12,29;UBERON:0000955,7.52e-12,47;UBERON:0006238,7.52e-12,47;UBERON:0002346,1.11e-11,64;UBERON:0003075,1.11e-11,64;UBERON:0007284,1.11e-11,64;UBERON:0001016,1.89e-11,75;UBERON:0002616,3.49e-11,46;UBERON:0003080,2.50e-10,40;UBERON:0002780,3.31e-10,39;UBERON:0001890,3.31e-10,39;UBERON:0006240,3.31e-10,39;UBERON:0010314,1.69e-09,92;UBERON:0010371,4.52e-09,73;UBERON:0002021,1.12e-08,10;UBERON:0000411,1.12e-08,10;UBERON:0001950,1.12e-08,10;UBERON:0003056,1.65e-08,49;UBERON:0000956,4.51e-08,21;UBERON:0001869,4.51e-08,21;UBERON:0000203,4.51e-08,21;UBERON:0004121,4.88e-07,95;UBERON:0000924,4.88e-07,95;UBERON:0006601,4.88e-07,95|phase1_expression=2.24208385946712,2.09385244583617,3.63999391511629,3.93203474698879,4.00716583957078,2.51818907867835,1.16806320297763,1.67860320474049,1.267098499365,1.63845168425395,1.54096171402954,1.59544317990673,2.22560948910567,3.2345548895029,0.333109761815663,0.202475267389826,0,0.788655413395594,1.37114433605739,2.97072756258621,1.10556277196391,0.695036658406197,1.30599894569468,0.639969691173627,0.45881856213434,1.72269589234506,1.7230479846363,1.07735616342945,2.28028103347649,0.504060259519861,1.77384408524244,0.635030673459631,5.53558308826113,0,0.866554859253824,1.66234645358492,1.02084678131185,0,0,0.523523743973798,2.35292595212406,0,0,1.00717454380462,0.709638518536602,1.28482726513177,0.782391344348039,0.65407546914134,0.439372365468944,1.55543919259427,0,0,0.671130424230945,2.90144856804538,1.68046899571232,0.514518872071894,0.85960031981627,0.515672092277442,1.41621522601718,1.5869729378161,1.90149421051854,0.338844532069132,0.889294796111139,0.449949858640699,0,1.4209602298922,1.19840044207362,1.15265491596466,1.55534418462716,2.43010688997043,1.47227472945967,2.57085885963423,2.65042249141936,1.34739879136449,1.53352753629178,0,1.10115880999389,2.29837208553338,2.15049146558741,2.1101806036831,3.56801810049398,2.08365348222704,2.23346399201105,3.37657566019008,1.83357897332172,2.65165726926301,3.27454865837937,2.98239113320481,0.227178579999552,0.302286240427142,2.6087803983151,0.860423876981386,0.679971333707751,2.15881276655127,4.54843492213368,4.03224198387602,0.842666520790511,0.511290967734173,0.519572009205738,0.70667914902068,0.704217098883403,1.28326477414318,0,0,0.865964164044856,0,0.505524445014783,0.91347103775248,1.03575153458869,0.742210695324124,1.56136794089522,1.52232739156071,1.61430848079241,1.65794904607885,1.41106448562846,1.13099932196708,0.741584903203122,1.15679485535929,0,1.45590164952668,0.883366073841574,0.484875253135222,1.86391761218122,4.68449275218475,3.14170060220183,0.510914110417183,1.07833612055328,0.599902730993408,0.889491589511453,1.3481157546434,1.83000241127451,2.01046963380583,2.60736480288415,2.55715457330331,2.70124457927428,1.94689515681309,0.916554274652847,0.373220911830279,0.252722758433675,0.631325567659422,0.650602214813519,1.37941262660084,0,0.60281927134286,1.36072998302656,1.40925092313335,0.937017245597288,1.81092359517311,0.646703978798527,0.945530400839096,1.05570674498369,1.31517439456545,0.834141747676794,1.0447564995665,0.205782136407943,1.79130840136644,0,1.02939162845886,0.568326998791185,1.65700618028402,0.938104239924385,0.36012412292203,0.710234206755631,1.57411385397923,1.07986979021165,0.697601834251224,1.07309360559848,1.05088808130453,0.65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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:225372 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8R1C9,uniprot:Q3UR23 | |||
|association_with_transcript=0bp_to_ENSMUST00000001415,NM_146085,uc008enz.1_5end | |||
|cluster_id=chr18:36839007..36839034,- | |||
|description=CAGE_peak_3_at_Apbb3_5end | |||
|id=chr18:36839007..36839034,- | |||
|ontology_enrichment_celltype=CL:0000117!4.92e-08!23;CL:0000337!4.92e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.92e-09,23;CL:0000337,1.92e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.60e-13!34;UBERON:0001049!3.51e-13!52;UBERON:0005068!3.51e-13!52;UBERON:0006241!3.51e-13!52;UBERON:0007135!3.51e-13!52;UBERON:0002346!1.04e-11!71;UBERON:0003075!1.04e-11!71;UBERON:0007284!1.04e-11!71;UBERON:0000955!1.15e-11!50;UBERON:0006238!1.15e-11!50;UBERON:0002616!4.57e-11!49;UBERON:0001017!9.94e-11!73;UBERON:0005743!9.94e-11!73;UBERON:0002791!1.30e-10!29;UBERON:0003528!1.30e-10!29;UBERON:0001893!1.30e-10!29;UBERON:0000073!1.28e-09!75;UBERON:0001016!1.28e-09!75;UBERON:0003080!3.04e-09!40;UBERON:0000033!3.54e-09!63;UBERON:0002780!3.88e-09!39;UBERON:0001890!3.88e-09!39;UBERON:0006240!3.88e-09!39;UBERON:0003056!8.96e-08!49;UBERON:0007811!9.36e-08!86;UBERON:0002021!9.38e-08!10;UBERON:0000411!9.38e-08!10;UBERON:0001950!9.38e-08!10;UBERON:0000956!4.12e-07!21;UBERON:0001869!4.12e-07!21;UBERON:0000203!4.12e-07!21;UBERON:0004121!4.89e-07!102;UBERON:0000924!4.89e-07!102;UBERON:0006601!4.89e-07!102;UBERON:0000153!5.44e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.30e-15,34;UBERON:0000073,5.23e-15,54;UBERON:0001049,1.65e-14,52;UBERON:0005068,1.65e-14,52;UBERON:0006241,1.65e-14,52;UBERON:0007135,1.65e-14,52;UBERON:0001017,2.29e-12,73;UBERON:0003528,4.24e-12,29;UBERON:0002791,4.24e-12,29;UBERON:0001893,4.24e-12,29;UBERON:0000955,7.52e-12,47;UBERON:0006238,7.52e-12,47;UBERON:0002346,1.11e-11,64;UBERON:0003075,1.11e-11,64;UBERON:0007284,1.11e-11,64;UBERON:0001016,1.89e-11,75;UBERON:0002616,3.49e-11,46;UBERON:0003080,2.50e-10,40;UBERON:0002780,3.31e-10,39;UBERON:0001890,3.31e-10,39;UBERON:0006240,3.31e-10,39;UBERON:0010314,1.69e-09,92;UBERON:0010371,4.52e-09,73;UBERON:0002021,1.12e-08,10;UBERON:0000411,1.12e-08,10;UBERON:0001950,1.12e-08,10;UBERON:0003056,1.65e-08,49;UBERON:0000956,4.51e-08,21;UBERON:0001869,4.51e-08,21;UBERON:0000203,4.51e-08,21;UBERON:0004121,4.88e-07,95;UBERON:0000924,4.88e-07,95;UBERON:0006601,4.88e-07,95 | |||
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| |||
|short_description=p3@Apbb3 | |||
}} |
Revision as of 17:29, 5 August 2015
Short description: | p3@Apbb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Apbb3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000001415, NM_146085, uc008enz.1_5end |
EntrezGene: | 225372 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.92e-09 | 23 |
neuroblast (sensu Vertebrata) | 1.92e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
gray matter | 3.30e-15 | 34 |
regional part of nervous system | 5.23e-15 | 54 |
neural tube | 1.65e-14 | 52 |
neural rod | 1.65e-14 | 52 |
future spinal cord | 1.65e-14 | 52 |
neural keel | 1.65e-14 | 52 |
central nervous system | 2.29e-12 | 73 |
brain grey matter | 4.24e-12 | 29 |
regional part of telencephalon | 4.24e-12 | 29 |
telencephalon | 4.24e-12 | 29 |
brain | 7.52e-12 | 47 |
future brain | 7.52e-12 | 47 |
neurectoderm | 1.11e-11 | 64 |
neural plate | 1.11e-11 | 64 |
presumptive neural plate | 1.11e-11 | 64 |
nervous system | 1.89e-11 | 75 |
regional part of brain | 3.49e-11 | 46 |
anterior neural tube | 2.50e-10 | 40 |
regional part of forebrain | 3.31e-10 | 39 |
forebrain | 3.31e-10 | 39 |
future forebrain | 3.31e-10 | 39 |
structure with developmental contribution from neural crest | 1.69e-09 | 92 |
ecto-epithelium | 4.52e-09 | 73 |
occipital lobe | 1.12e-08 | 10 |
visual cortex | 1.12e-08 | 10 |
neocortex | 1.12e-08 | 10 |
pre-chordal neural plate | 1.65e-08 | 49 |
cerebral cortex | 4.51e-08 | 21 |
cerebral hemisphere | 4.51e-08 | 21 |
pallium | 4.51e-08 | 21 |
ectoderm-derived structure | 4.88e-07 | 95 |
ectoderm | 4.88e-07 | 95 |
presumptive ectoderm | 4.88e-07 | 95 |