FFCP PHASE1:Mm9::chr6:58781450..58781498,+: Difference between revisions
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{{FFCP|EntrezGene=73998|HGNC=|MCL_coexpression_id=1|UniProt=D3Z2S3,D3Z3U0|association_with_transcript=0bp_to_ENSMUST00000122981,ENSMUST00000141600_5end|description=CAGE_peak_1_at_Herc3_5end|id=chr6:58781450..58781498,+|ontology_enrichment_celltype=CL:0000117!8.41e-07!23;CL:0000337!8.41e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,7.72e-07,23;CL:0000337,7.72e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.55e-13!52;UBERON:0005068!3.55e-13!52;UBERON:0006241!3.55e-13!52;UBERON:0007135!3.55e-13!52;UBERON:0000955!3.96e-12!50;UBERON:0006238!3.96e-12!50;UBERON:0002616!9.45e-12!49;UBERON:0002020!1.09e-11!34;UBERON:0000033!7.37e-10!63;UBERON:0001017!1.84e-09!73;UBERON:0005743!1.84e-09!73;UBERON:0003080!2.09e-09!40;UBERON:0002791!3.45e-09!29;UBERON:0003528!3.45e-09!29;UBERON:0001893!3.45e-09!29;UBERON:0000073!3.76e-09!75;UBERON:0001016!3.76e-09!75;UBERON:0002780!7.46e-09!39;UBERON:0001890!7.46e-09!39;UBERON:0006240!7.46e-09!39;UBERON:0002346!1.60e-08!71;UBERON:0003075!1.60e-08!71;UBERON:0007284!1.60e-08!71;UBERON:0003056!2.99e-08!49;UBERON:0002021!2.24e-07!10;UBERON:0000411!2.24e-07!10;UBERON:0001950!2.24e-07!10;UBERON:0007811!2.51e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.80e-14,54;UBERON:0001049,3.38e-13,52;UBERON:0005068,3.38e-13,52;UBERON:0006241,3.38e-13,52;UBERON:0007135,3.38e-13,52;UBERON:0002020,9.80e-12,34;UBERON:0010314,9.95e-11,92;UBERON:0000955,1.29e-10,47;UBERON:0006238,1.29e-10,47;UBERON:0002616,2.98e-10,46;UBERON:0002346,3.17e-10,64;UBERON:0003075,3.17e-10,64;UBERON:0007284,3.17e-10,64;UBERON:0001017,1.87e-09,73;UBERON:0003080,1.92e-09,40;UBERON:0003528,3.14e-09,29;UBERON:0002791,3.14e-09,29;UBERON:0001893,3.14e-09,29;UBERON:0001016,3.83e-09,75;UBERON:0002780,6.87e-09,39;UBERON:0001890,6.87e-09,39;UBERON:0006240,6.87e-09,39;UBERON:0010371,1.07e-08,73;UBERON:0003056,2.79e-08,49;UBERON:0002021,2.22e-07,10;UBERON:0000411,2.22e-07,10;UBERON:0001950,2.22e-07,10;UBERON:0004121,3.33e-07,95;UBERON:0000924,3.33e-07,95;UBERON:0006601,3.33e-07,95|phase1_expression=4.32401887182944,3.14077866875425,3.63999391511629,6.65421264875026,9.5170188689806,4.02910252588535,3.27057696833736,11.4919757863003,3.23814060948833,2.10658073689794,1.19852577757853,1.51567102091139,17.462474452983,14.8614684112296,2.33176833270964,3.44207954562704,1.39912375625629,11.0411757875383,12.2031845909108,13.580468857537,4.59233766815777,0,0,3.35984087866154,5.96464130774642,2.29692785646008,3.4460959692726,2.37018355954478,4.18051522804023,6.5527833737582,2.88249663851896,0,0,0,3.75507105676657,3.65716219788683,4.49172583777212,6.27797446105362,2.3440060335714,5.75876118371178,4.1176204162171,7.5135003345429,4.85510353031154,0.377690453926732,0,0.183546752161682,0.782391344348039,2.61630187656536,5.05278220289285,2.13872888981712,4.4795654920116,2.87505128729943,6.71130424230945,7.25362142011344,10.0828139742739,1.28629718017973,0.85960031981627,1.54701627683233,8.49729135610311,8.46385566835253,3.80298842103708,1.35537812827653,0.889294796111139,2.2497492932035,0.988866362566974,0.7104801149461,2.39680088414724,1.15265491596466,5.70292867696627,7.02030879324791,3.78584930432488,13.139945282575,12.3686382932904,3.30725157880376,4.88811902193005,0,13.2139057199266,14.5563565417114,14.4390141260869,6.59431438650969,7.77644970620482,8.85552729946492,13.1216009530649,16.3201156909187,13.9046405476897,12.9636577608414,12.6710795911202,14.1663578827228,3.40767869999328,3.55186332501892,5.50742528533188,3.44169550792555,0,3.2382191498269,2.59910566979068,0.896053774194671,4.49422144421606,0.852151612890289,1.29893002301434,0.35333957451034,4.64783285263046,0,0,0,1.94841936910093,2.78695852022608,3.53867111510348,3.76806803072898,2.84831672011889,4.00793775475027,2.94925055502431,1.52232739156071,2.53677046981664,2.71300752994721,4.11560474974967,4.14699751387929,10.6293836125781,3.7595832799177,5.30766331169925,7.27950824763341,3.75430581382669,0.969750506270444,0,22.8369021669007,19.4785437336513,4.34276993854605,2.75574786363617,1.79970819298022,1.77898317902291,18.8736205650077,16.9275223042892,7.91622418311046,18.7730265807659,18.6672283851141,17.2464076984435,12.9793010454206,3.1570202793598,3.73220911830279,6.31806896084187,8.83855794723191,2.60240885925407,2.98872735763515,1.98068342785884,2.56198190320716,3.6739709541717,4.22775276940004,4.96619140166563,19.4027528054262,1.5089759505299,1.70195472151037,1.23165786914764,1.53437012699302,3.33656699070717,2.089512999133,1.85203922767149,2.7864797354589,0,1.02939162845886,0.852490498186778,5.79952163099405,4.92504725960302,5.40186184383045,7.57583153872673,8.06733350164356,7.25055430570678,7.20855228726264,10.4626626545851,8.87416601990488,10.6963902443762,9.02921052435024,9.24184428822755,7.45619935869195,6.80605357402257,6.71032093801859,19.3466752678997,5.65975368086064,4.95628174475697,2.90895623329899,2.34617075588757,4.87697010906921,3.22168653305233,6.25218926332362,6.89371935919098,7.7992506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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:73998 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3Z2S3,uniprot:D3Z3U0 | |||
|association_with_transcript=0bp_to_ENSMUST00000122981,ENSMUST00000141600_5end | |||
|cluster_id=chr6:58781450..58781498,+ | |||
|description=CAGE_peak_1_at_Herc3_5end | |||
|id=chr6:58781450..58781498,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.41e-07!23;CL:0000337!8.41e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.72e-07,23;CL:0000337,7.72e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.55e-13!52;UBERON:0005068!3.55e-13!52;UBERON:0006241!3.55e-13!52;UBERON:0007135!3.55e-13!52;UBERON:0000955!3.96e-12!50;UBERON:0006238!3.96e-12!50;UBERON:0002616!9.45e-12!49;UBERON:0002020!1.09e-11!34;UBERON:0000033!7.37e-10!63;UBERON:0001017!1.84e-09!73;UBERON:0005743!1.84e-09!73;UBERON:0003080!2.09e-09!40;UBERON:0002791!3.45e-09!29;UBERON:0003528!3.45e-09!29;UBERON:0001893!3.45e-09!29;UBERON:0000073!3.76e-09!75;UBERON:0001016!3.76e-09!75;UBERON:0002780!7.46e-09!39;UBERON:0001890!7.46e-09!39;UBERON:0006240!7.46e-09!39;UBERON:0002346!1.60e-08!71;UBERON:0003075!1.60e-08!71;UBERON:0007284!1.60e-08!71;UBERON:0003056!2.99e-08!49;UBERON:0002021!2.24e-07!10;UBERON:0000411!2.24e-07!10;UBERON:0001950!2.24e-07!10;UBERON:0007811!2.51e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.80e-14,54;UBERON:0001049,3.38e-13,52;UBERON:0005068,3.38e-13,52;UBERON:0006241,3.38e-13,52;UBERON:0007135,3.38e-13,52;UBERON:0002020,9.80e-12,34;UBERON:0010314,9.95e-11,92;UBERON:0000955,1.29e-10,47;UBERON:0006238,1.29e-10,47;UBERON:0002616,2.98e-10,46;UBERON:0002346,3.17e-10,64;UBERON:0003075,3.17e-10,64;UBERON:0007284,3.17e-10,64;UBERON:0001017,1.87e-09,73;UBERON:0003080,1.92e-09,40;UBERON:0003528,3.14e-09,29;UBERON:0002791,3.14e-09,29;UBERON:0001893,3.14e-09,29;UBERON:0001016,3.83e-09,75;UBERON:0002780,6.87e-09,39;UBERON:0001890,6.87e-09,39;UBERON:0006240,6.87e-09,39;UBERON:0010371,1.07e-08,73;UBERON:0003056,2.79e-08,49;UBERON:0002021,2.22e-07,10;UBERON:0000411,2.22e-07,10;UBERON:0001950,2.22e-07,10;UBERON:0004121,3.33e-07,95;UBERON:0000924,3.33e-07,95;UBERON:0006601,3.33e-07,95 | |||
|phase1_expression=4.32401887182944,3.14077866875425,3.63999391511629,6.65421264875026,9.5170188689806,4.02910252588535,3.27057696833736,11.4919757863003,3.23814060948833,2.10658073689794,1.19852577757853,1.51567102091139,17.462474452983,14.8614684112296,2.33176833270964,3.44207954562704,1.39912375625629,11.0411757875383,12.2031845909108,13.580468857537,4.59233766815777,0,0,3.35984087866154,5.96464130774642,2.29692785646008,3.4460959692726,2.37018355954478,4.18051522804023,6.5527833737582,2.88249663851896,0,0,0,3.75507105676657,3.65716219788683,4.49172583777212,6.27797446105362,2.3440060335714,5.75876118371178,4.1176204162171,7.5135003345429,4.85510353031154,0.377690453926732,0,0.183546752161682,0.782391344348039,2.61630187656536,5.05278220289285,2.13872888981712,4.4795654920116,2.87505128729943,6.71130424230945,7.25362142011344,10.0828139742739,1.28629718017973,0.85960031981627,1.54701627683233,8.49729135610311,8.46385566835253,3.80298842103708,1.35537812827653,0.889294796111139,2.2497492932035,0.988866362566974,0.7104801149461,2.39680088414724,1.15265491596466,5.70292867696627,7.02030879324791,3.78584930432488,13.139945282575,12.3686382932904,3.30725157880376,4.88811902193005,0,13.2139057199266,14.5563565417114,14.4390141260869,6.59431438650969,7.77644970620482,8.85552729946492,13.1216009530649,16.3201156909187,13.9046405476897,12.9636577608414,12.6710795911202,14.1663578827228,3.40767869999328,3.55186332501892,5.50742528533188,3.44169550792555,0,3.2382191498269,2.59910566979068,0.896053774194671,4.49422144421606,0.852151612890289,1.29893002301434,0.35333957451034,4.64783285263046,0,0,0,1.94841936910093,2.78695852022608,3.53867111510348,3.76806803072898,2.84831672011889,4.00793775475027,2.94925055502431,1.52232739156071,2.53677046981664,2.71300752994721,4.11560474974967,4.14699751387929,10.6293836125781,3.7595832799177,5.30766331169925,7.27950824763341,3.75430581382669,0.969750506270444,0,22.8369021669007,19.4785437336513,4.34276993854605,2.75574786363617,1.79970819298022,1.77898317902291,18.8736205650077,16.9275223042892,7.91622418311046,18.7730265807659,18.6672283851141,17.2464076984435,12.9793010454206,3.1570202793598,3.73220911830279,6.31806896084187,8.83855794723191,2.60240885925407,2.98872735763515,1.98068342785884,2.56198190320716,3.6739709541717,4.22775276940004,4.96619140166563,19.4027528054262,1.5089759505299,1.70195472151037,1.23165786914764,1.53437012699302,3.33656699070717,2.089512999133,1.85203922767149,2.7864797354589,0,1.02939162845886,0.852490498186778,5.79952163099405,4.92504725960302,5.40186184383045,7.57583153872673,8.06733350164356,7.25055430570678,7.20855228726264,10.4626626545851,8.87416601990488,10.6963902443762,9.02921052435024,9.24184428822755,7.45619935869195,6.80605357402257,6.71032093801859,19.3466752678997,5.65975368086064,4.95628174475697,2.90895623329899,2.34617075588757,4.87697010906921,3.22168653305233,6.25218926332362,6.89371935919098,7.79925067061493,7.11793592316767,9.0584425098206,9.80207314321051,9.54991065797524,9.94316844307513,7.19055526923377,4.53889904736858,4.18196673834171,1.13800740571849,2.05647322697512,7.88954149711563,3.05476991767971,3.29719228184964,3.92760591385784,7.01925562079256,4.87113488332687,5.65195420228949,6.16985819609003,3.85388415213294,2.50267658574141,1.37591296579242,2.24862112384854,1.82574109249653,3.61765739628625,2.80088436959562,3.74004978686054,2.2698931748505,1.92192989231657,7.18841032636773,3.72140947668503,3.43241440426017,2.52578877947112,3.04975602987251,3.85954817090694,4.0645701836653,2.08440552947533,1.95557971730431,3.39490171550376,2.34690248288502,3.1826188913945,2.61848004974615,6.04914308359176,3.62560831444239,2.87904096543407,2.87018583583477,3.27726629431476,3.9717545829156,3.61622646453779,3.01582567878545,4.35124547054968,3.44234991113325,6.62248191131358,14.4495530989013,15.1203075703942,0.327869890753351,5.80683132570058,2.2085575359138,1.17131623288992,2.58508077279359,2.15071918157297,2.67358408898873,0.849229592366497,2.83367491172426,1.46127928955656,3.95287777946523,8.35435422696698,3.40656204499845,1.78065603667255,4.23506094319298,3.13443233647817,5.30980553359851,2.91336763385978,2.72091201268276,1.13163047853539,3.2483208216885,3.07435147943927,3.35956781118687,5.08947221268508,3.92147116223193,1.58018378967908,4.21674434299995,1.03135543248187,9.53230896110606,2.52085531643834,2.19909762430683,3.00071849044229,5.85222771019503,5.17269571046005,6.91105886528908,2.74018454203139,3.98941903708308,6.14313005505079,2.42581237860458,4.122156323537,2.26050197374268,3.19658502119226,2.626191568069,1.31312719796049,6.70405924248657,13.9068976507882,4.78438466233988,2.88941615148511,2.03713980106683,2.0720530270516,3.14396723758358,3.66045077130436,4.24946074984638,2.93898049879682,1.93479963326193,3.81868247206045,2.53068794864908,2.64315307264903,3.34816556547584,2.50905955217362,3.71216358368502,4.45052343069908,6.11635572367486,4.71160695571253,5.70305882483889,2.4853572523477,0.56369293868419,2.99033092087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| |||
|short_description=p1@Herc3 | |||
}} |
Revision as of 00:15, 6 August 2015
Short description: | p1@Herc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Herc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000122981, ENSMUST00000141600_5end |
EntrezGene: | 73998 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.72e-07 | 23 |
neuroblast (sensu Vertebrata) | 7.72e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.80e-14 | 54 |
neural tube | 3.38e-13 | 52 |
neural rod | 3.38e-13 | 52 |
future spinal cord | 3.38e-13 | 52 |
neural keel | 3.38e-13 | 52 |
gray matter | 9.80e-12 | 34 |
structure with developmental contribution from neural crest | 9.95e-11 | 92 |
brain | 1.29e-10 | 47 |
future brain | 1.29e-10 | 47 |
regional part of brain | 2.98e-10 | 46 |
neurectoderm | 3.17e-10 | 64 |
neural plate | 3.17e-10 | 64 |
presumptive neural plate | 3.17e-10 | 64 |
central nervous system | 1.87e-09 | 73 |
anterior neural tube | 1.92e-09 | 40 |
brain grey matter | 3.14e-09 | 29 |
regional part of telencephalon | 3.14e-09 | 29 |
telencephalon | 3.14e-09 | 29 |
nervous system | 3.83e-09 | 75 |
regional part of forebrain | 6.87e-09 | 39 |
forebrain | 6.87e-09 | 39 |
future forebrain | 6.87e-09 | 39 |
ecto-epithelium | 1.07e-08 | 73 |
pre-chordal neural plate | 2.79e-08 | 49 |
occipital lobe | 2.22e-07 | 10 |
visual cortex | 2.22e-07 | 10 |
neocortex | 2.22e-07 | 10 |
ectoderm-derived structure | 3.33e-07 | 95 |
ectoderm | 3.33e-07 | 95 |
presumptive ectoderm | 3.33e-07 | 95 |