FFCP PHASE1:Hg19::chr12:113796410..113796421,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:113796410..113796421,+
|short_description=p2@PLBD2
|description=CAGE_peak_2_at_PLBD2_5end
|association_with_transcript=-137bp_to_ENST00000548997_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=196463 | |EntrezGene=196463 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27283 | |HGNC=27283 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-137bp_to_ENST00000548997_5end | |||
|cluster_id=chr12:113796410..113796421,+ | |||
|description=CAGE_peak_2_at_PLBD2_5end | |||
|id=chr12:113796410..113796421,+ | |||
|ontology_enrichment_celltype=CL:0002009!7.54e-17!65;CL:0002194!3.45e-16!63;CL:0000576!3.45e-16!63;CL:0000040!3.45e-16!63;CL:0000559!3.45e-16!63;CL:0000557!8.61e-16!71;CL:0000839!9.01e-15!70;CL:0002057!1.33e-14!42;CL:0000766!2.06e-14!76;CL:0000860!1.45e-12!45;CL:0000034!8.16e-12!444;CL:0000723!2.43e-11!436;CL:0000048!6.12e-11!430;CL:0000763!1.86e-08!112;CL:0000049!1.86e-08!112;CL:0000134!2.08e-07!358;CL:0000219!2.90e-07!390;CL:0002320!8.49e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.15e-21;39!CL:0000234;1.15e-21;39!CL:0000860;1.63e-21;33!CL:0002057;1.63e-21;33!CL:0000576;8.37e-14;48!CL:0000766;7.16e-10;69!CL:0000235;2.37e-07;6!CL:0000451;4.23e-07;10!CL:0000990;7.06e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,5.21e-30,61;CL:0002194,9.24e-30,59;CL:0000576,9.24e-30,59;CL:0000040,9.24e-30,59;CL:0000559,9.24e-30,59;CL:0000557,1.90e-27,67;CL:0000766,7.57e-27,72;CL:0000473,1.64e-26,48;CL:0000234,1.64e-26,48;CL:0000839,5.33e-25,66;CL:0000860,3.24e-21,42;CL:0002057,3.24e-21,42;CL:0000763,4.25e-18,108;CL:0000049,4.25e-18,108;CL:0000738,3.55e-11,136;CL:0000034,4.13e-10,441;CL:0000723,6.34e-10,433;CL:0002087,8.78e-10,115;CL:0000048,9.38e-10,427;CL:0002031,1.54e-09,120;CL:0002032,4.15e-08,161;CL:0000837,4.15e-08,161;CL:0000134,8.00e-08,354;CL:0000037,9.29e-08,168;CL:0002320,1.48e-07,361;CL:0000988,1.71e-07,177;CL:0000451,4.17e-07,10;CL:0000235,4.28e-07,6;CL:0000990,6.79e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;2.11e-15;42!CL:0000049;4.27e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.33e-14!80;UBERON:0001474!1.66e-14!86;UBERON:0004765!4.72e-12!101;UBERON:0001434!4.72e-12!101;UBERON:0002204!1.47e-11!167;UBERON:0002405!5.78e-11!115;UBERON:0001017!7.32e-11!82;UBERON:0005743!2.88e-10!86;UBERON:0002390!4.99e-10!102;UBERON:0003061!4.99e-10!102;UBERON:0000073!5.26e-10!94;UBERON:0001016!5.26e-10!94;UBERON:0001049!2.39e-09!57;UBERON:0005068!2.39e-09!57;UBERON:0006241!2.39e-09!57;UBERON:0007135!2.39e-09!57;UBERON:0002193!1.60e-08!112;UBERON:0002616!1.76e-08!59;UBERON:0000955!7.05e-08!69;UBERON:0006238!7.05e-08!69;UBERON:0002780!1.37e-07!41;UBERON:0001890!1.37e-07!41;UBERON:0006240!1.37e-07!41;UBERON:0003080!5.06e-07!42;UBERON:0002384!8.55e-07!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.53e-24,76;UBERON:0001474,1.28e-22,82;UBERON:0004765,3.40e-19,90;UBERON:0002405,2.53e-18,93;UBERON:0001434,1.51e-16,100;UBERON:0002390,1.61e-16,98;UBERON:0003061,1.61e-16,98;UBERON:0002193,1.55e-14,108;UBERON:0002204,5.85e-13,167;UBERON:0001049,1.07e-10,56;UBERON:0005068,1.07e-10,56;UBERON:0006241,1.07e-10,56;UBERON:0007135,1.07e-10,56;UBERON:0003081,9.01e-10,203;UBERON:0000073,5.34e-09,53;UBERON:0002616,5.34e-09,53;UBERON:0001017,1.40e-08,81;UBERON:0001016,5.89e-08,89;UBERON:0000926,1.55e-07,315;UBERON:0004120,1.55e-07,315;UBERON:0006603,1.55e-07,315;UBERON:0002384,1.57e-07,371;UBERON:0002780,5.58e-07,41;UBERON:0001890,5.58e-07,41;UBERON:0003080,5.58e-07,41;UBERON:0006240,5.58e-07,41 | |||
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| ||
|short_description=p2@PLBD2 | |||
}} | }} |
Latest revision as of 12:37, 16 September 2015
Short description: | p2@PLBD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PLBD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -137bp_to_ENST00000548997_5end |
EntrezGene: | PLBD2 |
HGNC: | 27283 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 5.21e-30 | 61 |
monopoietic cell | 9.24e-30 | 59 |
monocyte | 9.24e-30 | 59 |
monoblast | 9.24e-30 | 59 |
promonocyte | 9.24e-30 | 59 |
granulocyte monocyte progenitor cell | 1.90e-27 | 67 |
myeloid leukocyte | 7.57e-27 | 72 |
defensive cell | 1.64e-26 | 48 |
phagocyte | 1.64e-26 | 48 |
myeloid lineage restricted progenitor cell | 5.33e-25 | 66 |
classical monocyte | 3.24e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.24e-21 | 42 |
myeloid cell | 4.25e-18 | 108 |
common myeloid progenitor | 4.25e-18 | 108 |
leukocyte | 3.55e-11 | 136 |
stem cell | 4.13e-10 | 441 |
somatic stem cell | 6.34e-10 | 433 |
nongranular leukocyte | 8.78e-10 | 115 |
multi fate stem cell | 9.38e-10 | 427 |
hematopoietic lineage restricted progenitor cell | 1.54e-09 | 120 |
hematopoietic oligopotent progenitor cell | 4.15e-08 | 161 |
hematopoietic multipotent progenitor cell | 4.15e-08 | 161 |
mesenchymal cell | 8.00e-08 | 354 |
hematopoietic stem cell | 9.29e-08 | 168 |
connective tissue cell | 1.48e-07 | 361 |
hematopoietic cell | 1.71e-07 | 177 |
dendritic cell | 4.17e-07 | 10 |
macrophage | 4.28e-07 | 6 |
conventional dendritic cell | 6.79e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.53e-24 | 76 |
bone element | 1.28e-22 | 82 |
skeletal element | 3.40e-19 | 90 |
immune system | 2.53e-18 | 93 |
skeletal system | 1.51e-16 | 100 |
hematopoietic system | 1.61e-16 | 98 |
blood island | 1.61e-16 | 98 |
hemolymphoid system | 1.55e-14 | 108 |
musculoskeletal system | 5.85e-13 | 167 |
neural tube | 1.07e-10 | 56 |
neural rod | 1.07e-10 | 56 |
future spinal cord | 1.07e-10 | 56 |
neural keel | 1.07e-10 | 56 |
lateral plate mesoderm | 9.01e-10 | 203 |
regional part of nervous system | 5.34e-09 | 53 |
regional part of brain | 5.34e-09 | 53 |
central nervous system | 1.40e-08 | 81 |
nervous system | 5.89e-08 | 89 |
mesoderm | 1.55e-07 | 315 |
mesoderm-derived structure | 1.55e-07 | 315 |
presumptive mesoderm | 1.55e-07 | 315 |
connective tissue | 1.57e-07 | 371 |
regional part of forebrain | 5.58e-07 | 41 |
forebrain | 5.58e-07 | 41 |
anterior neural tube | 5.58e-07 | 41 |
future forebrain | 5.58e-07 | 41 |