FFCP PHASE1:Hg19::chr2:120517452..120517509,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5775 | |EntrezGene=5775 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9656 | |HGNC=9656 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-20bp_to_ENST00000460162_5end | |association_with_transcript=-20bp_to_ENST00000460162_5end | ||
|cluster_id=chr2:120517452..120517509,+ | |||
|coexpression_cluster_id=C2306 | |coexpression_cluster_id=C2306 | ||
|description=CAGE_peak_1_at_PTPN4_5end | |description=CAGE_peak_1_at_PTPN4_5end | ||
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|ontology_enrichment_celltype=CL:0000542!1.84e-12!53;CL:0000051!1.84e-12!53;CL:0000838!3.18e-12!52;CL:0000791!5.13e-12!18;CL:0000789!5.13e-12!18;CL:0002420!5.13e-12!18;CL:0002419!5.13e-12!18;CL:0000790!5.13e-12!18;CL:0000084!5.41e-09!25;CL:0000827!5.41e-09!25;CL:0000625!4.08e-08!11 | |ontology_enrichment_celltype=CL:0000542!1.84e-12!53;CL:0000051!1.84e-12!53;CL:0000838!3.18e-12!52;CL:0000791!5.13e-12!18;CL:0000789!5.13e-12!18;CL:0002420!5.13e-12!18;CL:0002419!5.13e-12!18;CL:0000790!5.13e-12!18;CL:0000084!5.41e-09!25;CL:0000827!5.41e-09!25;CL:0000625!4.08e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;4.24e-12;18!CL:0000789;4.24e-12;18!CL:0002419;4.24e-12;18!CL:0000084;4.12e-09;25!CL:0000625;3.76e-08;11!CL:0000542;9.10e-08;53 | |ontology_enrichment_celltype_v019=CL:0000791;4.24e-12;18!CL:0000789;4.24e-12;18!CL:0002419;4.24e-12;18!CL:0000084;4.12e-09;25!CL:0000625;3.76e-08;11!CL:0000542;9.10e-08;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.84e-12,53;CL:0000051,1.84e-12,53;CL:0000838,3.18e-12,52;CL:0000791,5.13e-12,18;CL:0000789,5.13e-12,18;CL:0002420,5.13e-12,18;CL:0002419,5.13e-12,18;CL:0000790,5.13e-12,18;CL:0000084,5.41e-09,25;CL:0000827,5.41e-09,25;CL:0000625,4.08e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;4.24e-12;18!CL:0000051;9.10e-08;53 | |ontology_enrichment_development_v019=CL:0000790;4.24e-12;18!CL:0000051;9.10e-08;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.43e-27!115;UBERON:0001017!1.55e-18!82;UBERON:0005743!6.81e-18!86;UBERON:0001049!5.51e-16!57;UBERON:0005068!5.51e-16!57;UBERON:0006241!5.51e-16!57;UBERON:0007135!5.51e-16!57;UBERON:0000073!7.04e-16!94;UBERON:0001016!7.04e-16!94;UBERON:0002780!2.22e-15!41;UBERON:0001890!2.22e-15!41;UBERON:0006240!2.22e-15!41;UBERON:0003080!2.60e-15!42;UBERON:0000955!4.83e-15!69;UBERON:0006238!4.83e-15!69;UBERON:0002616!1.10e-14!59;UBERON:0001893!1.81e-12!34;UBERON:0002020!2.08e-12!34;UBERON:0003528!2.08e-12!34;UBERON:0001869!3.68e-12!32;UBERON:0002791!3.83e-12!33;UBERON:0002619!3.42e-11!22;UBERON:0000956!3.73e-11!25;UBERON:0000203!3.73e-11!25;UBERON:0000153!1.75e-10!129;UBERON:0007811!1.75e-10!129;UBERON:0001950!2.45e-10!20;UBERON:0002346!4.89e-09!90;UBERON:0003075!7.03e-09!86;UBERON:0007284!7.03e-09!86;UBERON:0000033!1.37e-08!123;UBERON:0003056!1.76e-08!61;UBERON:0000924!4.48e-08!173;UBERON:0006601!4.48e-08!173;UBERON:0004121!7.21e-08!169 | |ontology_enrichment_uberon=UBERON:0007023!2.43e-27!115;UBERON:0001017!1.55e-18!82;UBERON:0005743!6.81e-18!86;UBERON:0001049!5.51e-16!57;UBERON:0005068!5.51e-16!57;UBERON:0006241!5.51e-16!57;UBERON:0007135!5.51e-16!57;UBERON:0000073!7.04e-16!94;UBERON:0001016!7.04e-16!94;UBERON:0002780!2.22e-15!41;UBERON:0001890!2.22e-15!41;UBERON:0006240!2.22e-15!41;UBERON:0003080!2.60e-15!42;UBERON:0000955!4.83e-15!69;UBERON:0006238!4.83e-15!69;UBERON:0002616!1.10e-14!59;UBERON:0001893!1.81e-12!34;UBERON:0002020!2.08e-12!34;UBERON:0003528!2.08e-12!34;UBERON:0001869!3.68e-12!32;UBERON:0002791!3.83e-12!33;UBERON:0002619!3.42e-11!22;UBERON:0000956!3.73e-11!25;UBERON:0000203!3.73e-11!25;UBERON:0000153!1.75e-10!129;UBERON:0007811!1.75e-10!129;UBERON:0001950!2.45e-10!20;UBERON:0002346!4.89e-09!90;UBERON:0003075!7.03e-09!86;UBERON:0007284!7.03e-09!86;UBERON:0000033!1.37e-08!123;UBERON:0003056!1.76e-08!61;UBERON:0000924!4.48e-08!173;UBERON:0006601!4.48e-08!173;UBERON:0004121!7.21e-08!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.78e-11;41!UBERON:0001890;1.78e-11;41!UBERON:0000956;3.02e-11;25!UBERON:0000203;3.02e-11;25!UBERON:0002619;3.05e-11;22!UBERON:0001869;3.11e-11;32!UBERON:0002791;5.97e-11;32!UBERON:0001893;6.65e-11;34!UBERON:0003528;7.95e-11;34!UBERON:0002020;7.95e-11;34!UBERON:0001950;2.20e-10;20!UBERON:0000073;5.62e-10;53!UBERON:0002616;5.62e-10;53!UBERON:0007023;8.43e-09;114!UBERON:0000955;1.58e-07;68!UBERON:0001017;2.10e-07;75 | |ontology_enrichment_uberon_v019=UBERON:0002780;1.78e-11;41!UBERON:0001890;1.78e-11;41!UBERON:0000956;3.02e-11;25!UBERON:0000203;3.02e-11;25!UBERON:0002619;3.05e-11;22!UBERON:0001869;3.11e-11;32!UBERON:0002791;5.97e-11;32!UBERON:0001893;6.65e-11;34!UBERON:0003528;7.95e-11;34!UBERON:0002020;7.95e-11;34!UBERON:0001950;2.20e-10;20!UBERON:0000073;5.62e-10;53!UBERON:0002616;5.62e-10;53!UBERON:0007023;8.43e-09;114!UBERON:0000955;1.58e-07;68!UBERON:0001017;2.10e-07;75 | ||
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| ||
|short_description=p1@PTPN4 | |short_description=p1@PTPN4 | ||
}} | }} |
Latest revision as of 17:12, 16 September 2015
Short description: | p1@PTPN4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTPN4_5end |
Coexpression cluster: | C2306_CD4_CD8_cerebellum_Mast_Neural_thymus_Natural |
Association with transcript: | -20bp_to_ENST00000460162_5end |
EntrezGene: | PTPN4 |
HGNC: | 9656 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.84e-12 | 53 |
common lymphoid progenitor | 1.84e-12 | 53 |
lymphoid lineage restricted progenitor cell | 3.18e-12 | 52 |
mature alpha-beta T cell | 5.13e-12 | 18 |
alpha-beta T cell | 5.13e-12 | 18 |
immature T cell | 5.13e-12 | 18 |
mature T cell | 5.13e-12 | 18 |
immature alpha-beta T cell | 5.13e-12 | 18 |
T cell | 5.41e-09 | 25 |
pro-T cell | 5.41e-09 | 25 |
CD8-positive, alpha-beta T cell | 4.08e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.40e-27 | 114 |
central nervous system | 1.59e-18 | 81 |
nervous system | 2.41e-16 | 89 |
regional part of nervous system | 3.11e-16 | 53 |
regional part of brain | 3.11e-16 | 53 |
neural tube | 5.25e-16 | 56 |
neural rod | 5.25e-16 | 56 |
future spinal cord | 5.25e-16 | 56 |
neural keel | 5.25e-16 | 56 |
regional part of forebrain | 2.22e-15 | 41 |
forebrain | 2.22e-15 | 41 |
anterior neural tube | 2.22e-15 | 41 |
future forebrain | 2.22e-15 | 41 |
brain | 4.96e-15 | 68 |
future brain | 4.96e-15 | 68 |
telencephalon | 1.81e-12 | 34 |
brain grey matter | 2.08e-12 | 34 |
gray matter | 2.08e-12 | 34 |
cerebral hemisphere | 3.68e-12 | 32 |
regional part of telencephalon | 6.74e-12 | 32 |
regional part of cerebral cortex | 3.42e-11 | 22 |
cerebral cortex | 3.73e-11 | 25 |
pallium | 3.73e-11 | 25 |
neocortex | 2.45e-10 | 20 |
neurectoderm | 2.31e-09 | 86 |
neural plate | 3.24e-09 | 82 |
presumptive neural plate | 3.24e-09 | 82 |
pre-chordal neural plate | 1.85e-08 | 61 |
organ system subdivision | 1.86e-08 | 223 |
ectoderm-derived structure | 5.62e-08 | 171 |
ectoderm | 5.62e-08 | 171 |
presumptive ectoderm | 5.62e-08 | 171 |