FFCP PHASE1:Hg19::chr16:50775948..50775959,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:50775948..50775959,+ to FFCP PHASE1:Hg19::chr16:50775948..50775959,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1540 | |EntrezGene=1540 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2584 | |HGNC=2584 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQC7,F5H2R7 | |UniProt=Q9NQC7,F5H2R7 | ||
|association_with_transcript=-1bp_to_ENST00000311559,ENST00000427738,ENST00000540145,NM_001042355,NM_015247,uc002egn.1,uc002ego.2,uc002egp.1,uc002egq.1,uc010cbs.1_5end | |||
|cluster_id=chr16:50775948..50775959,+ | |||
|description=CAGE_peak_4_at_CYLD_5end | |||
|id=chr16:50775948..50775959,+ | |||
|ontology_enrichment_celltype=CL:0002057!6.43e-23!42;CL:0000766!2.38e-22!76;CL:0000860!2.29e-20!45;CL:0000839!1.13e-19!70;CL:0000557!1.16e-19!71;CL:0002194!1.33e-19!63;CL:0000576!1.33e-19!63;CL:0000040!1.33e-19!63;CL:0000559!1.33e-19!63;CL:0002009!7.46e-19!65;CL:0000738!5.37e-11!140;CL:0000763!4.74e-10!112;CL:0000049!4.74e-10!112;CL:0002087!2.56e-09!119;CL:0002031!4.53e-09!124;CL:0000134!6.15e-09!358;CL:0002320!8.03e-09!365;CL:0000048!2.16e-08!430;CL:0000723!8.75e-08!436;CL:0000219!2.09e-07!390;CL:0000034!3.69e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.99e-30;33!CL:0002057;2.99e-30;33!CL:0000473;5.18e-30;39!CL:0000234;5.18e-30;39!CL:0000576;9.91e-19;48!CL:0000766;4.21e-16;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.56e-40,72;CL:0000473,4.63e-37,48;CL:0000234,4.63e-37,48;CL:0002194,2.38e-36,59;CL:0000576,2.38e-36,59;CL:0000040,2.38e-36,59;CL:0000559,2.38e-36,59;CL:0000839,7.52e-36,66;CL:0000557,3.70e-35,67;CL:0002009,7.81e-35,61;CL:0000860,6.99e-33,42;CL:0002057,6.99e-33,42;CL:0000763,1.79e-24,108;CL:0000049,1.79e-24,108;CL:0000738,2.92e-19,136;CL:0002031,3.72e-16,120;CL:0002087,5.18e-16,115;CL:0000037,3.43e-14,168;CL:0000988,1.08e-13,177;CL:0002032,1.44e-13,161;CL:0000837,1.44e-13,161;CL:0000134,2.43e-08,354;CL:0002320,6.66e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.38e-26;42!CL:0000049;1.08e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.33e-18!102;UBERON:0003061!2.33e-18!102;UBERON:0002371!6.62e-18!80;UBERON:0004765!1.45e-17!101;UBERON:0001434!1.45e-17!101;UBERON:0001474!2.72e-16!86;UBERON:0002193!3.39e-15!112;UBERON:0002204!3.36e-13!167;UBERON:0001893!1.93e-08!34;UBERON:0003081!3.00e-08!216;UBERON:0001869!3.94e-08!32;UBERON:0002384!5.89e-08!375;UBERON:0002791!5.96e-08!33;UBERON:0002405!9.58e-08!115;UBERON:0002780!1.90e-07!41;UBERON:0001890!1.90e-07!41;UBERON:0006240!1.90e-07!41;UBERON:0002020!3.07e-07!34;UBERON:0003528!3.07e-07!34;UBERON:0003080!5.46e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;5.52e-12;22!UBERON:0001869;3.98e-11;32!UBERON:0001950;4.34e-11;20!UBERON:0001893;9.51e-11;34!UBERON:0000956;2.95e-10;25!UBERON:0000203;2.95e-10;25!UBERON:0002791;1.77e-09;32!UBERON:0003528;3.77e-09;34!UBERON:0002020;3.77e-09;34!UBERON:0002780;2.83e-07;41!UBERON:0001890;2.83e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.09e-32,76;UBERON:0001474,9.41e-29,82;UBERON:0002390,7.37e-27,98;UBERON:0003061,7.37e-27,98;UBERON:0001434,5.34e-26,100;UBERON:0004765,3.05e-25,90;UBERON:0002405,4.41e-24,93;UBERON:0002193,2.62e-23,108;UBERON:0002204,1.40e-14,167;UBERON:0001893,6.28e-13,34;UBERON:0001869,2.44e-12,32;UBERON:0002619,3.06e-12,22;UBERON:0001950,2.40e-11,20;UBERON:0002791,1.07e-10,32;UBERON:0000956,1.77e-10,25;UBERON:0000203,1.77e-10,25;UBERON:0002780,4.52e-10,41;UBERON:0001890,4.52e-10,41;UBERON:0003080,4.52e-10,41;UBERON:0006240,4.52e-10,41;UBERON:0003081,6.67e-10,203;UBERON:0003528,7.04e-10,34;UBERON:0002020,7.04e-10,34;UBERON:0000073,4.23e-09,53;UBERON:0002616,4.23e-09,53;UBERON:0001017,2.10e-08,81;UBERON:0001049,2.20e-08,56;UBERON:0005068,2.20e-08,56;UBERON:0006241,2.20e-08,56;UBERON:0007135,2.20e-08,56;UBERON:0001016,7.53e-08,89;UBERON:0000955,7.66e-08,68;UBERON:0006238,7.66e-08,68;UBERON:0002384,2.60e-07,371 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0,0,0,0.74259811776028,0,0.672325146451775,0.602694528023977,0,1.46379839637152,0.246242116153576,0.204000691244253,0,0.286235987131057,0,0.125542639594803,0.382067028739756,0,0.0787107813136792,0.393364276848904,1.15148819429164,1.08371286321253,0,0,0.369754010166788,0.0774672005803016,0,0,1.66198622559563,0.601633342410425,1.30206522429511,0.223915474239924,0.647787332037959,1.03030227053675,0.581592955118259,1.51150377475524,0.242584061187816,1.39457422143411,2.05583944010913,1.23882548358041,2.3015391385772,2.81776777182011,1.18241114944293,2.41321976515633,1.93645405075148,0,1.31769637679823,0.818718450173537,1.57306439111559,0.918251677112708,2.56743221660875,0.639337125799041,1.31940520074686,1.39624560335142,1.70489900213078,1.7412554317715,3.97169657283798,1.24564449799115,2.51248665256743,2.08593167368081,0.868755378820466,2.42159801053347,4.78760926783834,3.16462387440884,0.845021145247767,1.06302149982522,0.838634582033504,1.23561494261145,0.750884464207532,0.48217676009124,0.855038231223746,0.99458338599545,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.590129310341499,0,0.205601498999509,0,0.651844533267181,0,0,0.445641827540694,0.294605907474837,0.443067789167242,0.812411591295047,0,0,0.328875809207352,0,0.289803085735052,0,0.802622484269139,0,0.226618685395132,0.766440987203842,0,0,0,0,0,0.301150238155546,0.255973222308837,1.24930726552346,0.236777252044017,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0,0.722878304769133,1.00267582127178,0.434539556882471,0,0.486634870302636,0,0.221729397462564,0,0.654895377488563,0,0,1.9472843619281,1.0447784237956,1.59549552622638,0,0,1.11437250398869,0.198762407366705,0.860234595106124,0.347140501607594,0,0,0,0.208994966536811,0.258416759169329,0,0,0.402829317109147,0.760272105718513,0,0,0.81014194788176,0.0892997282840798,0.44905874525234,0.112611480483322,0,0,0,1.31780417436063,3.87780264148325,0,0,0.12663051166458,0.662045904066094,0.286836620748814,0.354668382198357,0,0,0,0.933633106199299,0.134710672069688,0.163461903113459,0.605429710579726,0,0.234321431833797,0.312160076830321,0,1.04614076386261,0.587172493218824,0.323745888736263,0.561803226808994,0,0.245668634623536,0.826606249406124,2.37600571456411,0.494533858557114,0,0,0.505008341862199,0.250237039743928,1.10825646193673,1.31693286264251,0.612975591598039,0.901428353439581,0.113432183160021,0.179389635688862,0.213557388818567,0.423863802319124,1.80054657650641,0.515262646192195,0.515281080091258,0.744467425326359,0.168776332241266,0.487185025805993,0.757301322732344,0.0920498986422993,0.80823028409406,1.06502877754984,1.0075209822764,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0.72995471815166,0,0.643240938192885,0,0.464367928031979,0.721879481669586,0.118306800039844,0.337169380156203,0,0,0,0.237270619111097,0.134831308160164,0,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.34779121492523,0.352226082707465,0.144366447761074,0,0,0,0,1.23108503043699,1.63802985597466,1.0404181360211,0,0,0.141775097242386,0.268675568108545,0,0,2.95597942737566,1.23267807618516,0.829312462163088,0.144119953416961,0.25248486685276,0.571481048629521,0.763976851116555,0,0,0,0,0.285826432630578,0.112131084345361,0,0,0.129271715757778,0,0.845302752556,0.531876233169741,1.04007436911366,0.257207374262142,0,0,0,0,0,0,0,0.791951872933429,0.301439377059586,0,0,0,1.00451418286425,0,0.718874566474748,1.14861935834114,0,0.144781306667579,1.2328579353023,0.716243852959582,0.112085143993527,0.197030760201927,0,0,0,0,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,1.03473071292505,0,0.184369168541703,0.521301686808497,0.195801157462741,0.343143423810856,0.82707210449155,1.07857100409308,0.533637789017222,0.303127571446259,0,0,0.248107807818777,0.460385919864187,0.280660094433074,0.256278298511402,0.511707249066704,0.160853921143607,0,0.154209693802656,0.532685175939381,0.657017248110473,0,0.464841513839837,0,0,0.0920809889358963,0.229628896329213,0.728364672026868,1.18011973463482,0,0.0770153371044148,0,0,0.211103257785751,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0.256450125116389,0,0,0,0.366277859273374,0.247528499761764,0,0,0,0.290012154876366,0.154048617114644,0.460511024178389,0.413509717453592,0.214840489736547,0.290033387828457,0.170453254832202,0.356128142586949,0.165284915360978,0,0,0.2023155617111,0.464845549297286,0.62962469366128,0.6970372701606,0,0,0,0.18532421910392,0.286249773483982,0,0.316379424718726,0.190630193923825,0,0.42793898803392,0.318203247925937,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0,1.05650146756755,0.272999822815972,0.565621727814851,0,0,0,0,0,0.655894752046633,0,0,0.281695602532241,0.286822704408103,0.294747123039363,0,0.709522128141196,0.422215270595328,1.31717957183961,0,0.349934720244983,0.2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| ||
|short_description=p4@CYLD | |||
}} | }} |
Latest revision as of 21:13, 16 September 2015
Short description: | p4@CYLD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CYLD_5end |
Coexpression cluster: | NA |
Association with transcript: | -1bp_to_ENST00000311559, ENST00000427738, ENST00000540145, NM_001042355, NM_015247, uc002egn.1, uc002ego.2, uc002egp.1, uc002egq.1, uc010cbs.1_5end |
EntrezGene: | CYLD |
HGNC: | 2584 |
UniProt: | Q9NQC7F5H2R7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.56e-40 | 72 |
defensive cell | 4.63e-37 | 48 |
phagocyte | 4.63e-37 | 48 |
monopoietic cell | 2.38e-36 | 59 |
monocyte | 2.38e-36 | 59 |
monoblast | 2.38e-36 | 59 |
promonocyte | 2.38e-36 | 59 |
myeloid lineage restricted progenitor cell | 7.52e-36 | 66 |
granulocyte monocyte progenitor cell | 3.70e-35 | 67 |
macrophage dendritic cell progenitor | 7.81e-35 | 61 |
classical monocyte | 6.99e-33 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.99e-33 | 42 |
myeloid cell | 1.79e-24 | 108 |
common myeloid progenitor | 1.79e-24 | 108 |
leukocyte | 2.92e-19 | 136 |
hematopoietic lineage restricted progenitor cell | 3.72e-16 | 120 |
nongranular leukocyte | 5.18e-16 | 115 |
hematopoietic stem cell | 3.43e-14 | 168 |
hematopoietic cell | 1.08e-13 | 177 |
hematopoietic oligopotent progenitor cell | 1.44e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.44e-13 | 161 |
mesenchymal cell | 2.43e-08 | 354 |
connective tissue cell | 6.66e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.09e-32 | 76 |
bone element | 9.41e-29 | 82 |
hematopoietic system | 7.37e-27 | 98 |
blood island | 7.37e-27 | 98 |
skeletal system | 5.34e-26 | 100 |
skeletal element | 3.05e-25 | 90 |
immune system | 4.41e-24 | 93 |
hemolymphoid system | 2.62e-23 | 108 |
musculoskeletal system | 1.40e-14 | 167 |
telencephalon | 6.28e-13 | 34 |
cerebral hemisphere | 2.44e-12 | 32 |
regional part of cerebral cortex | 3.06e-12 | 22 |
neocortex | 2.40e-11 | 20 |
regional part of telencephalon | 1.07e-10 | 32 |
cerebral cortex | 1.77e-10 | 25 |
pallium | 1.77e-10 | 25 |
regional part of forebrain | 4.52e-10 | 41 |
forebrain | 4.52e-10 | 41 |
anterior neural tube | 4.52e-10 | 41 |
future forebrain | 4.52e-10 | 41 |
lateral plate mesoderm | 6.67e-10 | 203 |
brain grey matter | 7.04e-10 | 34 |
gray matter | 7.04e-10 | 34 |
regional part of nervous system | 4.23e-09 | 53 |
regional part of brain | 4.23e-09 | 53 |
central nervous system | 2.10e-08 | 81 |
neural tube | 2.20e-08 | 56 |
neural rod | 2.20e-08 | 56 |
future spinal cord | 2.20e-08 | 56 |
neural keel | 2.20e-08 | 56 |
nervous system | 7.53e-08 | 89 |
brain | 7.66e-08 | 68 |
future brain | 7.66e-08 | 68 |
connective tissue | 2.60e-07 | 371 |