FFCP PHASE1:Hg19::chr1:24798515..24798519,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:24798515..24798519,+ to FFCP PHASE1:Hg19::chr1:24798515..24798519,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57185 | |EntrezGene=57185 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=25233 | |HGNC=25233 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=322bp_to_AF131814_5end | |||
|cluster_id=chr1:24798515..24798519,+ | |||
|description=CAGE_peak_3_at_NIPAL3_5end | |||
|id=chr1:24798515..24798519,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;4.86e-09;19!CL:0002537;6.39e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.26e-09,19;CL:0002537,5.97e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.11e-09!57;UBERON:0005068!1.11e-09!57;UBERON:0006241!1.11e-09!57;UBERON:0007135!1.11e-09!57;UBERON:0002616!5.30e-07!59;UBERON:0000955!6.93e-07!69;UBERON:0006238!6.93e-07!69;UBERON:0004121!9.48e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.15e-09;10!UBERON:0000158;2.15e-09;10!UBERON:0000125;1.89e-08;9!UBERON:0002308;1.89e-08;9!UBERON:0000073;4.44e-08;53!UBERON:0002616;4.44e-08;53!UBERON:0004732;2.11e-07;13!UBERON:0000305;2.54e-07;7!UBERON:0002780;3.93e-07;41!UBERON:0001890;3.93e-07;41!UBERON:0000478;9.85e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.15e-14,53;UBERON:0002616,7.15e-14,53;UBERON:0001049,7.98e-13,56;UBERON:0005068,7.98e-13,56;UBERON:0006241,7.98e-13,56;UBERON:0007135,7.98e-13,56;UBERON:0000955,1.04e-11,68;UBERON:0006238,1.04e-11,68;UBERON:0010371,1.97e-11,104;UBERON:0003075,1.02e-10,82;UBERON:0007284,1.02e-10,82;UBERON:0005631,1.51e-10,14;UBERON:0000158,1.51e-10,14;UBERON:0002346,6.47e-10,86;UBERON:0004121,8.21e-10,171;UBERON:0000924,8.21e-10,171;UBERON:0006601,8.21e-10,171;UBERON:0001017,8.50e-10,81;UBERON:0002780,1.77e-09,41;UBERON:0001890,1.77e-09,41;UBERON:0003080,1.77e-09,41;UBERON:0006240,1.77e-09,41;UBERON:0001016,4.15e-09,89;UBERON:0000125,6.84e-09,9;UBERON:0002308,6.84e-09,9;UBERON:0010314,5.07e-08,132;UBERON:0003528,7.56e-08,34;UBERON:0002020,7.56e-08,34;UBERON:0004923,1.34e-07,66;UBERON:0004732,1.93e-07,13;UBERON:0000305,3.24e-07,7;UBERON:0003056,6.21e-07,61 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.563817616383885,1.0007329835313,0,0.872338524100369,0,0,0.261185628199839,0,0,1.09220686065086,0.263766978228454,0.990130823680373,0.662794751455832,0.672325146451775,1.20538905604795,0,0,0.369363174230364,1.02000345622126,0.313454721478088,0.572471974262113,0.410623275218653,0,0.229240217243854,0,0.0787107813136792,0,0,0.154816123316076,0.919421224478927,0.30120591877825,0.739508020333575,0.154934401160603,0.426507697462265,0.293600439334847,0,0.200544447470142,0.217010870715852,0.223915474239924,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0,0.426224750532694,0,0.56738522469114,0,0,0.521482918420201,0,0,0,0,0,0,0,0.112328631146495,0,0.16072558669708,0,0,0,1.75996244461323,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.786021525498329,0.411202997999018,0.167186495390678,0.651844533267181,0.473447805734733,3.89653456815823,0.557052284425868,0.589211814949674,0.886135578334485,0.270803863765016,1.28091319725675,1.1705341280389,1.31550323682941,1.38175008892924,0.869409257205157,0.741432815810302,0.267540828089713,0,0.679856056185397,0.383220493601921,0.34362744548263,0.506039384039006,0.318565414324097,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0,0.802320587350522,0.434473211648397,0,0.670700859703636,0,1.44575660953827,1.00267582127178,0.869079113764942,0,0,0.378139268656271,0,0.263504357079378,0.196468613246569,0,0,0,0.348259474598534,0,0.476981248610684,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0.516833518338658,0,0,0.805658634218294,1.52054421143703,0,0,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0.872188104285069,2.48485975847659,0.25326102332916,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0.468642863667593,0.312160076830321,0,0.149448680551801,0.469737994575059,0.161872944368132,0.280901613404497,1.22492502752936,0.491337269247072,0.103325781175765,2.37600571456411,0.741800787835671,0,0,0,0.250237039743928,0.277064115484183,0,0.30648779579902,0.300476117813194,0.226864366320042,0.358779271377724,1.06778694409284,0.211931901159562,0.900273288253207,0.309157587715317,0,0.558350568994769,0.675105328965065,0.292311015483596,0.252433774244115,0.184099797284599,0,0.710019185033229,0.403008392910561,0.339121184620975,1.35282597214308,0.272746120590835,0.573609190778008,0.121973706129595,0,0,0,0,0.36497735907583,1.56449532329816,0,1.38134921352481,1.85747171212792,0.721879481669586,0.946454400318751,0.168584690078102,0,0,0.653638332277218,0.949082476444386,0,0.392442930250692,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0.329250856225877,0,0.502644862058154,0.740707561268237,0,0,1.44331342025273,0.34779121492523,0.117408694235822,0,0.462985512576611,0.380508304469197,0,0,0,0,0.148631162288728,0.93733833986777,1.00789276919316,0.141775097242386,0.358234090811393,0.290633938513962,0,0,0.088048434013226,0,0.144119953416961,0.37872730027914,0.063497894292169,0.381988425558278,0,0,0.205654985406647,1.20137223137567,0,0.224262168690721,0,0.22001485746285,0.387815147273333,0,0,1.32969058292435,1.04007436911366,0.257207374262142,2.83698264046557,0,0.714889968290738,0,0,0,1.06617584622764,0.791951872933429,0.301439377059586,0,0.499864955910285,0,0,0,0.479249710983165,1.14861935834114,0,0.144781306667579,0.61642896765115,0.179060963239896,0.336255431980582,0,0.431255149719035,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0.36807447515742,1.00034104211935,0.542530047399471,1.45579603071565,0.713715955188647,0.946214490203608,1.05427273493442,0.300946099727719,0,0,0,0.368738337083406,0.347534457872331,0.391602314925481,0,0,0.215714200818617,0.213455115606889,1.21251028578504,1.66435439510497,0.907170879989041,0,0.61384789315225,1.12264037773229,1.02511319404561,0.511707249066704,1.12597744800525,2.96836132889982,0.308419387605311,0.177561725313127,0.164254312027618,0,0.348631135379878,0,2.00506470303285,0.276242966807689,0.114814448164607,0.728364672026868,0.524497659837696,0,0.231046011313244,0,0,0.105551628892876,0,0.510281115829547,0,0,0.270946437543853,0,0.509752546090077,0,0.671624264166535,0.219259876645935,0,0.256450125116389,0,0.976135183992909,0.309123034943167,0,0.082509499920588,1.14853107599234,0.650060246036521,0,0.290012154876366,0.154048617114644,0.767518373630648,0.137836572484531,0.322260734604821,0,0.170453254832202,0.178064071293475,0.826424576804891,0.384380134730212,0.255225424989168,0.30347334256665,0.929691098594572,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.429374660225974,0,0,0,0.511795582622668,0,0,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,1.68503382495592,0,0.487426979262569,1.05650146756755,0.409499734223957,0.424216295861138,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0.202910376962704,0.6196469961995,0.281695602532241,0.573645408816206,0.491245205065606,0.71334210296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|phase1_expression=0.363356758541113,0.642301571672949,0.563817616383885,1.0007329835313,0,0.872338524100369,0,0,0.261185628199839,0,0,1.09220686065086,0.263766978228454,0.990130823680373,0.662794751455832,0.672325146451775,1.20538905604795,0,0,0.369363174230364,1.02000345622126,0.313454721478088,0.572471974262113,0.410623275218653,0,0.229240217243854,0,0.0787107813136792,0,0,0.154816123316076,0.919421224478927,0.30120591877825,0.739508020333575,0.154934401160603,0.426507697462265,0.293600439334847,0,0.200544447470142,0.217010870715852,0.223915474239924,0,0.515151135268373,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0.224723484445085,0,0,0,0,0,0.426224750532694,0,0.56738522469114,0,0,0.521482918420201,0,0,0,0,0,0,0,0.112328631146495,0,0.16072558669708,0,0,0,1.75996244461323,0,0,0.853460445133014,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.786021525498329,0.411202997999018,0.167186495390678,0.651844533267181,0.473447805734733,3.89653456815823,0.557052284425868,0.589211814949674,0.886135578334485,0.270803863765016,1.28091319725675,1.1705341280389,1.31550323682941,1.38175008892924,0.869409257205157,0.741432815810302,0.267540828089713,0,0.679856056185397,0.383220493601921,0.34362744548263,0.506039384039006,0.318565414324097,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0.236777252044017,0,0,0.802320587350522,0.434473211648397,0,0.670700859703636,0,1.44575660953827,1.00267582127178,0.869079113764942,0,0,0.378139268656271,0,0.263504357079378,0.196468613246569,0,0,0,0.348259474598534,0,0.476981248610684,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0.516833518338658,0,0,0.805658634218294,1.52054421143703,0,0,0,0.17859945656816,0,0,0,0,0.183201743930407,0,0,0.872188104285069,2.48485975847659,0.25326102332916,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0.468642863667593,0.312160076830321,0,0.149448680551801,0.469737994575059,0.161872944368132,0.280901613404497,1.22492502752936,0.491337269247072,0.103325781175765,2.37600571456411,0.741800787835671,0,0,0,0.250237039743928,0.277064115484183,0,0.30648779579902,0.300476117813194,0.226864366320042,0.358779271377724,1.06778694409284,0.211931901159562,0.900273288253207,0.309157587715317,0,0.558350568994769,0.675105328965065,0.292311015483596,0.252433774244115,0.184099797284599,0,0.710019185033229,0.403008392910561,0.339121184620975,1.35282597214308,0.272746120590835,0.573609190778008,0.121973706129595,0,0,0,0,0.36497735907583,1.56449532329816,0,1.38134921352481,1.85747171212792,0.721879481669586,0.946454400318751,0.168584690078102,0,0,0.653638332277218,0.949082476444386,0,0.392442930250692,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0.329250856225877,0,0.502644862058154,0.740707561268237,0,0,1.44331342025273,0.34779121492523,0.117408694235822,0,0.462985512576611,0.380508304469197,0,0,0,0,0.148631162288728,0.93733833986777,1.00789276919316,0.141775097242386,0.358234090811393,0.290633938513962,0,0,0.088048434013226,0,0.144119953416961,0.37872730027914,0.063497894292169,0.381988425558278,0,0,0.205654985406647,1.20137223137567,0,0.224262168690721,0,0.22001485746285,0.387815147273333,0,0,1.32969058292435,1.04007436911366,0.257207374262142,2.83698264046557,0,0.714889968290738,0,0,0,1.06617584622764,0.791951872933429,0.301439377059586,0,0.499864955910285,0,0,0,0.479249710983165,1.14861935834114,0,0.144781306667579,0.61642896765115,0.179060963239896,0.336255431980582,0,0.431255149719035,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0.36807447515742,1.00034104211935,0.542530047399471,1.45579603071565,0.713715955188647,0.946214490203608,1.05427273493442,0.300946099727719,0,0,0,0.368738337083406,0.347534457872331,0.391602314925481,0,0,0.215714200818617,0.213455115606889,1.21251028578504,1.66435439510497,0.907170879989041,0,0.61384789315225,1.12264037773229,1.02511319404561,0.511707249066704,1.12597744800525,2.96836132889982,0.308419387605311,0.177561725313127,0.164254312027618,0,0.348631135379878,0,2.00506470303285,0.276242966807689,0.114814448164607,0.728364672026868,0.524497659837696,0,0.231046011313244,0,0,0.105551628892876,0,0.510281115829547,0,0,0.270946437543853,0,0.509752546090077,0,0.671624264166535,0.219259876645935,0,0.256450125116389,0,0.976135183992909,0.309123034943167,0,0.082509499920588,1.14853107599234,0.650060246036521,0,0.290012154876366,0.154048617114644,0.767518373630648,0.137836572484531,0.322260734604821,0,0.170453254832202,0.178064071293475,0.826424576804891,0.384380134730212,0.255225424989168,0.30347334256665,0.929691098594572,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.429374660225974,0,0,0,0.511795582622668,0,0,0,0.179872457583315,0,0.117812402345686,0.404364963146632,0,1.68503382495592,0,0.487426979262569,1.05650146756755,0.409499734223957,0.424216295861138,0,0,0.66343897524122,0.438450885253763,0.578775534266688,0,0.202910376962704,0.6196469961995,0.281695602532241,0.573645408816206,0.491245205065606,0.71334210296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| ||
|short_description=p3@NIPAL3 | |||
}} | }} |
Latest revision as of 00:27, 17 September 2015
Short description: | p3@NIPAL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NIPAL3_5end |
Coexpression cluster: | NA |
Association with transcript: | 322bp_to_AF131814_5end |
EntrezGene: | NIPAL3 |
HGNC: | 25233 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.26e-09 | 19 |
amnion mesenchymal stem cell | 5.97e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 7.15e-14 | 53 |
regional part of brain | 7.15e-14 | 53 |
neural tube | 7.98e-13 | 56 |
neural rod | 7.98e-13 | 56 |
future spinal cord | 7.98e-13 | 56 |
neural keel | 7.98e-13 | 56 |
brain | 1.04e-11 | 68 |
future brain | 1.04e-11 | 68 |
ecto-epithelium | 1.97e-11 | 104 |
neural plate | 1.02e-10 | 82 |
presumptive neural plate | 1.02e-10 | 82 |
extraembryonic membrane | 1.51e-10 | 14 |
membranous layer | 1.51e-10 | 14 |
neurectoderm | 6.47e-10 | 86 |
ectoderm-derived structure | 8.21e-10 | 171 |
ectoderm | 8.21e-10 | 171 |
presumptive ectoderm | 8.21e-10 | 171 |
central nervous system | 8.50e-10 | 81 |
regional part of forebrain | 1.77e-09 | 41 |
forebrain | 1.77e-09 | 41 |
anterior neural tube | 1.77e-09 | 41 |
future forebrain | 1.77e-09 | 41 |
nervous system | 4.15e-09 | 89 |
neural nucleus | 6.84e-09 | 9 |
nucleus of brain | 6.84e-09 | 9 |
structure with developmental contribution from neural crest | 5.07e-08 | 132 |
brain grey matter | 7.56e-08 | 34 |
gray matter | 7.56e-08 | 34 |
organ component layer | 1.34e-07 | 66 |
segmental subdivision of nervous system | 1.93e-07 | 13 |
amnion | 3.24e-07 | 7 |
pre-chordal neural plate | 6.21e-07 | 61 |