FFCP PHASE1:Hg19::chr15:29131188..29131210,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:29131188..29131210,+ to FFCP PHASE1:Hg19::chr15:29131188..29131210,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=321 | |EntrezGene=321 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=579 | |HGNC=579 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=20bp_to_ENST00000558330,uc010azj.2,uc010uas.1,uc010uat.1_5end | |||
|cluster_id=chr15:29131188..29131210,+ | |||
|description=CAGE_peak_3_at_APBA2_5end | |||
|id=chr15:29131188..29131210,+ | |||
|ontology_enrichment_celltype=CL:0000222!2.24e-08!119;CL:0000791!3.32e-08!18;CL:0000789!3.32e-08!18;CL:0002420!3.32e-08!18;CL:0002419!3.32e-08!18;CL:0000790!3.32e-08!18;CL:0000115!2.89e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.08e-16;18!CL:0000789;6.08e-16;18!CL:0002419;6.08e-16;18!CL:0000084;2.44e-12;25!CL:0000625;2.07e-11;11!CL:0000624;2.61e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.49e-16,18;CL:0000789,3.49e-16,18;CL:0002420,3.49e-16,18;CL:0002419,3.49e-16,18;CL:0000790,3.49e-16,18;CL:0000084,1.66e-12,25;CL:0000827,1.66e-12,25;CL:0000625,7.35e-12,11;CL:0000624,4.11e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;6.08e-16;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.07e-18!82;UBERON:0005743!6.15e-18!86;UBERON:0000073!4.34e-17!94;UBERON:0001016!4.34e-17!94;UBERON:0000955!5.27e-16!69;UBERON:0006238!5.27e-16!69;UBERON:0001049!2.37e-15!57;UBERON:0005068!2.37e-15!57;UBERON:0006241!2.37e-15!57;UBERON:0007135!2.37e-15!57;UBERON:0002616!9.15e-15!59;UBERON:0002619!9.97e-15!22;UBERON:0001893!3.90e-14!34;UBERON:0000956!3.98e-14!25;UBERON:0000203!3.98e-14!25;UBERON:0001869!4.24e-14!32;UBERON:0001950!1.72e-13!20;UBERON:0002791!1.73e-13!33;UBERON:0002020!3.26e-13!34;UBERON:0003528!3.26e-13!34;UBERON:0000033!9.26e-13!123;UBERON:0003075!1.26e-12!86;UBERON:0007284!1.26e-12!86;UBERON:0000153!1.34e-12!129;UBERON:0007811!1.34e-12!129;UBERON:0002346!1.68e-12!90;UBERON:0002780!1.60e-11!41;UBERON:0001890!1.60e-11!41;UBERON:0006240!1.60e-11!41;UBERON:0000477!2.44e-11!286;UBERON:0003080!6.72e-11!42;UBERON:0000119!9.12e-11!312;UBERON:0000924!2.53e-10!173;UBERON:0006601!2.53e-10!173;UBERON:0004121!2.89e-10!169;UBERON:0003056!2.90e-10!61;UBERON:0000483!3.60e-10!309;UBERON:0000025!2.62e-09!194;UBERON:0004111!1.02e-08!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.20e-31;22!UBERON:0001950;1.09e-28;20!UBERON:0000956;3.44e-27;25!UBERON:0000203;3.44e-27;25!UBERON:0001869;6.64e-22;32!UBERON:0001893;6.16e-20;34!UBERON:0002791;1.55e-19;32!UBERON:0003528;3.30e-18;34!UBERON:0002020;3.30e-18;34!UBERON:0002780;9.38e-13;41!UBERON:0001890;9.38e-13;41!UBERON:0000200;3.89e-11;6!UBERON:0000073;8.15e-10;53!UBERON:0002616;8.15e-10;53!UBERON:0001872;1.01e-09;5!UBERON:0002021;1.28e-09;5!UBERON:0000955;4.61e-08;68!UBERON:0001871;7.37e-07;6!UBERON:0001017;9.00e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,7.09e-32,22;UBERON:0001950,6.71e-29,20;UBERON:0000956,2.17e-27,25;UBERON:0000203,2.17e-27,25;UBERON:0001869,9.27e-25,32;UBERON:0001893,6.48e-23,34;UBERON:0002791,2.31e-22,32;UBERON:0003528,1.11e-20,34;UBERON:0002020,1.11e-20,34;UBERON:0002780,7.15e-18,41;UBERON:0001890,7.15e-18,41;UBERON:0003080,7.15e-18,41;UBERON:0006240,7.15e-18,41;UBERON:0001049,8.27e-17,56;UBERON:0005068,8.27e-17,56;UBERON:0006241,8.27e-17,56;UBERON:0007135,8.27e-17,56;UBERON:0000073,1.13e-16,53;UBERON:0002616,1.13e-16,53;UBERON:0001017,4.26e-16,81;UBERON:0000955,1.15e-15,68;UBERON:0006238,1.15e-15,68;UBERON:0001016,1.50e-13,89;UBERON:0003056,5.11e-13,61;UBERON:0003075,1.15e-11,82;UBERON:0007284,1.15e-11,82;UBERON:0000200,4.17e-11,6;UBERON:0002346,9.55e-11,86;UBERON:0002021,7.67e-10,5;UBERON:0001872,8.71e-10,5;UBERON:0010371,1.50e-07,104;UBERON:0010314,6.04e-07,132;UBERON:0001871,8.18e-07,6 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0.218441372130172,0,0.247532705920093,0.331397375727916,1.34465029290355,0.602694528023977,0,0.487932798790507,0.738726348460727,0.204000691244253,0.940364164434263,0.286235987131057,0.136874425072884,0.376627918784408,0,0,0,0,0.383829398097213,0.309632246632152,0,1.204823675113,0.369754010166788,0,0,0,0,0,0.868043482863407,0,1.29557466407592,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,3.14735632182133,1.17903228824749,1.43921049299656,0,2.60737813306872,0.946895611469467,1.94826728407911,0,0.294605907474837,0.221533894583621,0.270803863765016,0,0,0.164437904603676,0.552700035571697,0.289803085735052,4.30031033169975,5.61835738988397,2.09071047609954,0,1.14966148080576,2.06176467289578,2.27717722817553,2.54852331459277,1.95325036156926,0,1.6563263098555,1.53583933385302,2.49861453104692,1.18388626022008,0.821127996921047,1.61285394579786,1.33720097891754,5.06885413589796,0,0,0.511450247374121,0,0,0,0,0,0.472674085820339,1.10864698731282,0.43917392846563,0.458426764241994,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0.694281003215189,1.13061588384802,3.35599548967925,1.10047216776027,0.626984899610432,1.03366703667732,0,0.66944122552934,1.20848795132744,0,0.732186172644509,0.367663080345869,1.62028389576352,0.267899184852239,0,0.675668882899933,0,1.89853131913626,0.549605231791222,0,0,0.436094052142534,0.496971951695318,0.379891534993739,0.662045904066094,0,0,0,1.06748995729705,1.2333377420858,0.311211035399766,0.538842688278752,0.490385709340376,0.454072282934794,0.576175924479999,1.17160715916898,0,0,0.149448680551801,0.469737994575059,0.161872944368132,0.421352420106746,0,1.22834317311768,0.103325781175765,1.18800285728205,0.989067717114227,0,0.718618141816238,1.68336113954066,1.12606667884768,0.277064115484183,0.438977620880838,0.30648779579902,0.600952235626387,0.340296549480063,0,0,0,0,0,0,0,0.168776332241266,0.194874010322397,0.252433774244115,0,0,0,0,0.339121184620975,0.193260853163297,0.272746120590835,0.286804595389004,0.365921118388786,0.397589304964456,0.348581828608555,0.414644220061482,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,4.20725321410337,0.4115740113314,0,0,0,0,0,0,0.171567810298526,0,0,0,0.648119116109707,0.325808305310325,1.03993478527958,0,0.34779121492523,0,0.721832238805369,0.462985512576611,0.380508304469197,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0.290633938513962,0,0,0,0,0,0,0.126995788584338,0.381988425558278,1.17217447210047,0,0.822619941626588,0,0.571652865261156,0.336393253036082,0.87192013766656,0.95339771567235,0.129271715757778,0,0,0.797814349754612,1.04007436911366,0.257207374262142,1.41849132023278,1.5985330740966,0.57191197463259,0,2.46972101034231,0,0.710783897485092,0,0.301439377059586,0,0.599837947092342,0,0,0,0.479249710983165,0,1.42636905040718,0.289562613335158,0.205476322550383,0.358121926479791,0,0.394061520403854,1.07813787429759,1.66845947163673,0.254094624222463,0,1.54657762555539,1.34013012267479,1.27587750330633,0,0,0,0.24538298343828,0,0.542530047399471,0,0,0,0,0,0,0,0,0.184369168541703,0.260650843404249,0,0,1.24060815673732,1.2942852049117,1.70764092485511,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.276242966807689,0.229628896329213,0.546273504020151,0.131124414959424,2.70719767744447,0.847168708148562,3.92174884588428,0,0.844413031143006,1.13733384070897,0.680374821106063,0.215915916102139,1.54227252690289,0.812839312631559,1.50506932156456,0.254876273045038,0,0.671624264166535,0,0,0,0.656029291399411,0.325378394664303,0.103041011647722,0,0,0,0,0,0.96670718292122,0.308097234229289,0,0.689182862422653,0,0.435050081742686,0.681813019328807,0.178064071293475,0.495854746082934,0.384380134730212,0.255225424989168,0.2023155617111,0,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0,1.116475108079,0,0.571890581771475,1.27948895655667,0,0,0.78494864019923,0.539617372749944,0,1.29593642580255,0.606547444719948,0,0.842516912477962,0,0.243713489631284,0,0.545999645631943,0.424216295861138,0,0.551365343546124,0,0.438450885253763,0.578775534266688,0.655894752046633,0.608731130888112,0,0.845086807596724,0.286822704408103,0.392996164052485,1.426684205925,0.354761064070598,0.211107635297664,0,0.75894634753143,1.74967360122491,0,0,0,0,0.86101074534246,1.68471475667626,0.443430153536676,0,1.01489521846434,0.764637207142375,0.569647187174163,2.1440859791201,1.64544909234478,0.648473311192717,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0.159426272728822,0,0,0,0,0,0,0,2.50634477090067,0,0.1605880751037,0,0.851692475380653,0,0.307240764308458,0.447352215784832,0.500547425135725,0,1.39203086947621,1.23087398947712,2.16364542780786,1.33228787199128,2.81974010175699,0,0,0.121360521749513,0,0,0,0,0,2.98244294329889,0.703347082052564,1.22439575525196,0,0,0,0.552567831062295,0,0.715880777515084,0,0,0,0,0,0.0986434056369336,0,0,2.9079982382856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| ||
|short_description=p3@APBA2 | |||
}} | }} |
Latest revision as of 02:18, 17 September 2015
Short description: | p3@APBA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_APBA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 20bp_to_ENST00000558330, uc010azj.2, uc010uas.1, uc010uat.1_5end |
EntrezGene: | APBA2 |
HGNC: | 579 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.49e-16 | 18 |
alpha-beta T cell | 3.49e-16 | 18 |
immature T cell | 3.49e-16 | 18 |
mature T cell | 3.49e-16 | 18 |
immature alpha-beta T cell | 3.49e-16 | 18 |
T cell | 1.66e-12 | 25 |
pro-T cell | 1.66e-12 | 25 |
CD8-positive, alpha-beta T cell | 7.35e-12 | 11 |
CD4-positive, alpha-beta T cell | 4.11e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 7.09e-32 | 22 |
neocortex | 6.71e-29 | 20 |
cerebral cortex | 2.17e-27 | 25 |
pallium | 2.17e-27 | 25 |
cerebral hemisphere | 9.27e-25 | 32 |
telencephalon | 6.48e-23 | 34 |
regional part of telencephalon | 2.31e-22 | 32 |
brain grey matter | 1.11e-20 | 34 |
gray matter | 1.11e-20 | 34 |
regional part of forebrain | 7.15e-18 | 41 |
forebrain | 7.15e-18 | 41 |
anterior neural tube | 7.15e-18 | 41 |
future forebrain | 7.15e-18 | 41 |
neural tube | 8.27e-17 | 56 |
neural rod | 8.27e-17 | 56 |
future spinal cord | 8.27e-17 | 56 |
neural keel | 8.27e-17 | 56 |
regional part of nervous system | 1.13e-16 | 53 |
regional part of brain | 1.13e-16 | 53 |
central nervous system | 4.26e-16 | 81 |
brain | 1.15e-15 | 68 |
future brain | 1.15e-15 | 68 |
nervous system | 1.50e-13 | 89 |
pre-chordal neural plate | 5.11e-13 | 61 |
neural plate | 1.15e-11 | 82 |
presumptive neural plate | 1.15e-11 | 82 |
gyrus | 4.17e-11 | 6 |
neurectoderm | 9.55e-11 | 86 |
occipital lobe | 7.67e-10 | 5 |
parietal lobe | 8.71e-10 | 5 |
ecto-epithelium | 1.50e-07 | 104 |
structure with developmental contribution from neural crest | 6.04e-07 | 132 |
temporal lobe | 8.18e-07 | 6 |