FFCP PHASE1:Hg19::chr2:163200864..163200919,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25801 | |EntrezGene=25801 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15990 | |HGNC=15990 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010zcu.1_5end | |association_with_transcript=0bp_to_uc010zcu.1_5end | ||
|cluster_id=chr2:163200864..163200919,+ | |||
|description=CAGE_peak_3_at_GCA_5end | |description=CAGE_peak_3_at_GCA_5end | ||
|id=chr2:163200864..163200919,+ | |id=chr2:163200864..163200919,+ | ||
|ontology_enrichment_celltype=CL:0000839!1.91e-16!70;CL:0000557!2.39e-16!71;CL:0000763!7.49e-16!112;CL:0000049!7.49e-16!112;CL:0000766!1.58e-15!76;CL:0002194!6.74e-15!63;CL:0000576!6.74e-15!63;CL:0000040!6.74e-15!63;CL:0000559!6.74e-15!63;CL:0002009!1.16e-14!65;CL:0002057!1.05e-13!42;CL:0000860!2.53e-11!45;CL:0000988!3.74e-08!182;CL:0000037!2.17e-07!172;CL:0000566!2.17e-07!172;CL:0002032!5.76e-07!165;CL:0000837!5.76e-07!165 | |ontology_enrichment_celltype=CL:0000839!1.91e-16!70;CL:0000557!2.39e-16!71;CL:0000763!7.49e-16!112;CL:0000049!7.49e-16!112;CL:0000766!1.58e-15!76;CL:0002194!6.74e-15!63;CL:0000576!6.74e-15!63;CL:0000040!6.74e-15!63;CL:0000559!6.74e-15!63;CL:0002009!1.16e-14!65;CL:0002057!1.05e-13!42;CL:0000860!2.53e-11!45;CL:0000988!3.74e-08!182;CL:0000037!2.17e-07!172;CL:0000566!2.17e-07!172;CL:0002032!5.76e-07!165;CL:0000837!5.76e-07!165 | ||
|ontology_enrichment_celltype_v019=CL:0000576;1.14e-12;48!CL:0000473;8.38e-12;39!CL:0000234;8.38e-12;39!CL:0000860;1.71e-11;33!CL:0002057;1.71e-11;33!CL:0000766;6.85e-09;69!CL:0000763;1.04e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,9.49e-23,67;CL:0000839,9.77e-23,66;CL:0000763,1.34e-22,108;CL:0000049,1.34e-22,108;CL:0000766,2.48e-21,72;CL:0002194,3.38e-21,59;CL:0000576,3.38e-21,59;CL:0000040,3.38e-21,59;CL:0000559,3.38e-21,59;CL:0002009,1.29e-20,61;CL:0000473,4.38e-18,48;CL:0000234,4.38e-18,48;CL:0000860,4.96e-16,42;CL:0002057,4.96e-16,42;CL:0000988,3.81e-13,177;CL:0000037,1.90e-12,168;CL:0002032,6.20e-12,161;CL:0000837,6.20e-12,161;CL:0000738,1.24e-09,136;CL:0002031,1.65e-09,120;CL:0002087,5.69e-08,115 | |||
|ontology_enrichment_development_v019=CL:0002057;3.82e-12;42!CL:0000049;4.50e-07;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.91e-17!57;UBERON:0005068!5.91e-17!57;UBERON:0006241!5.91e-17!57;UBERON:0007135!5.91e-17!57;UBERON:0002390!7.16e-15!102;UBERON:0003061!7.16e-15!102;UBERON:0005743!1.22e-14!86;UBERON:0002371!1.59e-14!80;UBERON:0002780!1.66e-14!41;UBERON:0001890!1.66e-14!41;UBERON:0006240!1.66e-14!41;UBERON:0003075!2.33e-14!86;UBERON:0007284!2.33e-14!86;UBERON:0003080!3.27e-14!42;UBERON:0002616!7.63e-14!59;UBERON:0001017!1.27e-13!82;UBERON:0002346!1.34e-13!90;UBERON:0007023!1.52e-12!115;UBERON:0002193!1.66e-12!112;UBERON:0001474!1.74e-12!86;UBERON:0000073!2.16e-12!94;UBERON:0001016!2.16e-12!94;UBERON:0000955!5.74e-12!69;UBERON:0006238!5.74e-12!69;UBERON:0003056!6.93e-12!61;UBERON:0001893!3.75e-11!34;UBERON:0002020!3.91e-11!34;UBERON:0003528!3.91e-11!34;UBERON:0002791!7.37e-11!33;UBERON:0004765!2.80e-10!101;UBERON:0001434!2.80e-10!101;UBERON:0001869!5.60e-10!32;UBERON:0002405!4.06e-09!115;UBERON:0000956!2.44e-07!25;UBERON:0000203!2.44e-07!25;UBERON:0000062!9.59e-07!511 | |ontology_enrichment_uberon=UBERON:0001049!5.91e-17!57;UBERON:0005068!5.91e-17!57;UBERON:0006241!5.91e-17!57;UBERON:0007135!5.91e-17!57;UBERON:0002390!7.16e-15!102;UBERON:0003061!7.16e-15!102;UBERON:0005743!1.22e-14!86;UBERON:0002371!1.59e-14!80;UBERON:0002780!1.66e-14!41;UBERON:0001890!1.66e-14!41;UBERON:0006240!1.66e-14!41;UBERON:0003075!2.33e-14!86;UBERON:0007284!2.33e-14!86;UBERON:0003080!3.27e-14!42;UBERON:0002616!7.63e-14!59;UBERON:0001017!1.27e-13!82;UBERON:0002346!1.34e-13!90;UBERON:0007023!1.52e-12!115;UBERON:0002193!1.66e-12!112;UBERON:0001474!1.74e-12!86;UBERON:0000073!2.16e-12!94;UBERON:0001016!2.16e-12!94;UBERON:0000955!5.74e-12!69;UBERON:0006238!5.74e-12!69;UBERON:0003056!6.93e-12!61;UBERON:0001893!3.75e-11!34;UBERON:0002020!3.91e-11!34;UBERON:0003528!3.91e-11!34;UBERON:0002791!7.37e-11!33;UBERON:0004765!2.80e-10!101;UBERON:0001434!2.80e-10!101;UBERON:0001869!5.60e-10!32;UBERON:0002405!4.06e-09!115;UBERON:0000956!2.44e-07!25;UBERON:0000203!2.44e-07!25;UBERON:0000062!9.59e-07!511 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.07e-12;41!UBERON:0001890;3.07e-12;41!UBERON:0001893;2.69e-11;34!UBERON:0000073;3.76e-11;53!UBERON:0002616;3.76e-11;53!UBERON:0003528;4.31e-11;34!UBERON:0002020;4.31e-11;34!UBERON:0002791;9.46e-11;32!UBERON:0001869;1.98e-10;32!UBERON:0000956;2.85e-08;25!UBERON:0000203;2.85e-08;25!UBERON:0002619;3.16e-07;22!UBERON:0000955;7.77e-07;68 | |||
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| ||
|short_description=p3@GCA | |short_description=p3@GCA | ||
}} | }} |
Latest revision as of 22:01, 17 September 2015
Short description: | p3@GCA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GCA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc010zcu.1_5end |
EntrezGene: | GCA |
HGNC: | 15990 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 9.49e-23 | 67 |
myeloid lineage restricted progenitor cell | 9.77e-23 | 66 |
myeloid cell | 1.34e-22 | 108 |
common myeloid progenitor | 1.34e-22 | 108 |
myeloid leukocyte | 2.48e-21 | 72 |
monopoietic cell | 3.38e-21 | 59 |
monocyte | 3.38e-21 | 59 |
monoblast | 3.38e-21 | 59 |
promonocyte | 3.38e-21 | 59 |
macrophage dendritic cell progenitor | 1.29e-20 | 61 |
defensive cell | 4.38e-18 | 48 |
phagocyte | 4.38e-18 | 48 |
classical monocyte | 4.96e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.96e-16 | 42 |
hematopoietic cell | 3.81e-13 | 177 |
hematopoietic stem cell | 1.90e-12 | 168 |
hematopoietic oligopotent progenitor cell | 6.20e-12 | 161 |
hematopoietic multipotent progenitor cell | 6.20e-12 | 161 |
leukocyte | 1.24e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 1.65e-09 | 120 |
nongranular leukocyte | 5.69e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.88e-20 | 56 |
neural rod | 1.88e-20 | 56 |
future spinal cord | 1.88e-20 | 56 |
neural keel | 1.88e-20 | 56 |
hematopoietic system | 3.02e-19 | 98 |
blood island | 3.02e-19 | 98 |
bone marrow | 8.38e-19 | 76 |
regional part of nervous system | 1.21e-18 | 53 |
regional part of brain | 1.21e-18 | 53 |
regional part of forebrain | 3.96e-17 | 41 |
forebrain | 3.96e-17 | 41 |
anterior neural tube | 3.96e-17 | 41 |
future forebrain | 3.96e-17 | 41 |
neural plate | 1.08e-16 | 82 |
presumptive neural plate | 1.08e-16 | 82 |
hemolymphoid system | 1.25e-16 | 108 |
central nervous system | 1.70e-16 | 81 |
bone element | 1.95e-16 | 82 |
neurectoderm | 1.42e-15 | 86 |
pre-chordal neural plate | 1.87e-15 | 61 |
immune system | 3.77e-15 | 93 |
brain | 5.31e-15 | 68 |
future brain | 5.31e-15 | 68 |
nervous system | 1.35e-13 | 89 |
ecto-epithelium | 4.07e-13 | 104 |
telencephalon | 5.34e-13 | 34 |
brain grey matter | 5.60e-13 | 34 |
gray matter | 5.60e-13 | 34 |
skeletal element | 5.68e-13 | 90 |
regional part of telencephalon | 6.56e-12 | 32 |
cerebral hemisphere | 1.46e-11 | 32 |
adult organism | 1.46e-10 | 114 |
skeletal system | 3.05e-10 | 100 |
cerebral cortex | 2.52e-08 | 25 |
pallium | 2.52e-08 | 25 |
regional part of cerebral cortex | 4.02e-07 | 22 |