FFCP PHASE1:Hg19::chr12:27091361..27091375,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:27091361..27091375,+
|short_description=p3@FGFR1OP2
|description=CAGE_peak_3_at_FGFR1OP2_5end
|association_with_transcript=-38bp_to_ENST00000544111_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26127 | |EntrezGene=26127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23098 | |HGNC=23098 | ||
|TSSclassifier=strong | |||
|UniProt=F5GX47 | |UniProt=F5GX47 | ||
|association_with_transcript=-38bp_to_ENST00000544111_5end | |||
|cluster_id=chr12:27091361..27091375,+ | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_3_at_FGFR1OP2_5end | |||
|id=chr12:27091361..27091375,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.54e-12!112;CL:0000049!1.54e-12!112;CL:0002032!1.73e-12!165;CL:0000837!1.73e-12!165;CL:0000037!2.10e-12!172;CL:0000566!2.10e-12!172;CL:0000839!1.56e-11!70;CL:0000557!1.82e-11!71;CL:0002031!1.82e-11!124;CL:0002009!4.14e-11!65;CL:0000766!1.55e-10!76;CL:0000988!1.79e-10!182;CL:0002194!1.99e-10!63;CL:0000576!1.99e-10!63;CL:0000040!1.99e-10!63;CL:0000559!1.99e-10!63;CL:0000738!1.55e-09!140;CL:0000860!3.14e-09!45;CL:0002087!8.18e-09!119;CL:0002057!1.44e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.76e-12;33!CL:0002057;1.76e-12;33!CL:0000473;2.73e-10;39!CL:0000234;2.73e-10;39!CL:0000576;2.25e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,1.59e-11,161;CL:0000837,1.59e-11,161;CL:0000763,1.72e-11,108;CL:0000049,1.72e-11,108;CL:0000037,2.50e-11,168;CL:0002031,1.66e-10,120;CL:0000839,2.48e-10,66;CL:0000557,2.84e-10,67;CL:0000988,3.81e-10,177;CL:0002009,4.90e-10,61;CL:0000766,1.43e-09,72;CL:0002194,2.55e-09,59;CL:0000576,2.55e-09,59;CL:0000040,2.55e-09,59;CL:0000559,2.55e-09,59;CL:0000473,2.84e-09,48;CL:0000234,2.84e-09,48;CL:0000860,8.16e-09,42;CL:0002057,8.16e-09,42;CL:0000738,2.03e-08,136;CL:0002087,9.05e-08,115 | |||
|ontology_enrichment_development_v019=CL:0002057;3.09e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.58e-17!115;UBERON:0002390!1.09e-14!102;UBERON:0003061!1.09e-14!102;UBERON:0002193!5.60e-14!112;UBERON:0001049!1.08e-13!57;UBERON:0005068!1.08e-13!57;UBERON:0006241!1.08e-13!57;UBERON:0007135!1.08e-13!57;UBERON:0002780!2.58e-12!41;UBERON:0001890!2.58e-12!41;UBERON:0006240!2.58e-12!41;UBERON:0003080!2.88e-12!42;UBERON:0001893!1.71e-10!34;UBERON:0002020!1.73e-10!34;UBERON:0003528!1.73e-10!34;UBERON:0002791!5.03e-10!33;UBERON:0002371!5.26e-10!80;UBERON:0002616!1.33e-09!59;UBERON:0001869!1.58e-09!32;UBERON:0000955!9.28e-09!69;UBERON:0006238!9.28e-09!69;UBERON:0001474!1.14e-08!86;UBERON:0002619!1.55e-08!22;UBERON:0002405!2.17e-08!115;UBERON:0001950!1.72e-07!20;UBERON:0001017!1.80e-07!82;UBERON:0002346!2.98e-07!90;UBERON:0003075!3.05e-07!86;UBERON:0007284!3.05e-07!86;UBERON:0004765!7.85e-07!101;UBERON:0001434!7.85e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.47e-10;41!UBERON:0001890;1.47e-10;41!UBERON:0001893;2.10e-10;34!UBERON:0002619;3.35e-10;22!UBERON:0003528;4.16e-10;34!UBERON:0002020;4.16e-10;34!UBERON:0002791;8.09e-10;32!UBERON:0001869;9.68e-10;32!UBERON:0001950;5.44e-09;20!UBERON:0000073;7.76e-09;53!UBERON:0002616;7.76e-09;53!UBERON:0000956;8.44e-08;25!UBERON:0000203;8.44e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.12e-17,114;UBERON:0001049,1.32e-15,56;UBERON:0005068,1.32e-15,56;UBERON:0006241,1.32e-15,56;UBERON:0007135,1.32e-15,56;UBERON:0000073,4.41e-14,53;UBERON:0002616,4.41e-14,53;UBERON:0002780,8.54e-14,41;UBERON:0001890,8.54e-14,41;UBERON:0003080,8.54e-14,41;UBERON:0006240,8.54e-14,41;UBERON:0002390,9.08e-14,98;UBERON:0003061,9.08e-14,98;UBERON:0002193,1.37e-12,108;UBERON:0001893,9.02e-12,34;UBERON:0003528,9.11e-12,34;UBERON:0002020,9.11e-12,34;UBERON:0002791,8.88e-11,32;UBERON:0001869,1.08e-10,32;UBERON:0002619,9.28e-10,22;UBERON:0000955,1.21e-09,68;UBERON:0006238,1.21e-09,68;UBERON:0002405,1.28e-09,93;UBERON:0003075,5.29e-09,82;UBERON:0007284,5.29e-09,82;UBERON:0002346,5.84e-09,86;UBERON:0002371,5.96e-09,76;UBERON:0001017,1.13e-08,81;UBERON:0001950,1.39e-08,20;UBERON:0000956,1.86e-07,25;UBERON:0000203,1.86e-07,25;UBERON:0001474,3.22e-07,82;UBERON:0001016,5.32e-07,89 | |||
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| ||
|short_description=p3@FGFR1OP2 | |||
}} | }} |
Latest revision as of 23:54, 17 September 2015
Short description: | p3@FGFR1OP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FGFR1OP2_5end |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | -38bp_to_ENST00000544111_5end |
EntrezGene: | FGFR1OP2 |
HGNC: | 23098 |
UniProt: | F5GX47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 1.59e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-11 | 161 |
myeloid cell | 1.72e-11 | 108 |
common myeloid progenitor | 1.72e-11 | 108 |
hematopoietic stem cell | 2.50e-11 | 168 |
hematopoietic lineage restricted progenitor cell | 1.66e-10 | 120 |
myeloid lineage restricted progenitor cell | 2.48e-10 | 66 |
granulocyte monocyte progenitor cell | 2.84e-10 | 67 |
hematopoietic cell | 3.81e-10 | 177 |
macrophage dendritic cell progenitor | 4.90e-10 | 61 |
myeloid leukocyte | 1.43e-09 | 72 |
monopoietic cell | 2.55e-09 | 59 |
monocyte | 2.55e-09 | 59 |
monoblast | 2.55e-09 | 59 |
promonocyte | 2.55e-09 | 59 |
defensive cell | 2.84e-09 | 48 |
phagocyte | 2.84e-09 | 48 |
classical monocyte | 8.16e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.16e-09 | 42 |
leukocyte | 2.03e-08 | 136 |
nongranular leukocyte | 9.05e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.12e-17 | 114 |
neural tube | 1.32e-15 | 56 |
neural rod | 1.32e-15 | 56 |
future spinal cord | 1.32e-15 | 56 |
neural keel | 1.32e-15 | 56 |
regional part of nervous system | 4.41e-14 | 53 |
regional part of brain | 4.41e-14 | 53 |
regional part of forebrain | 8.54e-14 | 41 |
forebrain | 8.54e-14 | 41 |
anterior neural tube | 8.54e-14 | 41 |
future forebrain | 8.54e-14 | 41 |
hematopoietic system | 9.08e-14 | 98 |
blood island | 9.08e-14 | 98 |
hemolymphoid system | 1.37e-12 | 108 |
telencephalon | 9.02e-12 | 34 |
brain grey matter | 9.11e-12 | 34 |
gray matter | 9.11e-12 | 34 |
regional part of telencephalon | 8.88e-11 | 32 |
cerebral hemisphere | 1.08e-10 | 32 |
regional part of cerebral cortex | 9.28e-10 | 22 |
brain | 1.21e-09 | 68 |
future brain | 1.21e-09 | 68 |
immune system | 1.28e-09 | 93 |
neural plate | 5.29e-09 | 82 |
presumptive neural plate | 5.29e-09 | 82 |
neurectoderm | 5.84e-09 | 86 |
bone marrow | 5.96e-09 | 76 |
central nervous system | 1.13e-08 | 81 |
neocortex | 1.39e-08 | 20 |
cerebral cortex | 1.86e-07 | 25 |
pallium | 1.86e-07 | 25 |
bone element | 3.22e-07 | 82 |
nervous system | 5.32e-07 | 89 |