FFCP PHASE1:Hg19::chr1:42800860..42800912,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22887 | |EntrezGene=22887 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29178 | |HGNC=29178 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UPW0,C9JVP0 | |UniProt=Q9UPW0,C9JVP0 | ||
|association_with_transcript=0bp_to_ENST00000361346,ENST00000361776,ENST00000445886,NM_001198852,NM_014947,uc001chf.2,uc001chh.1_5end | |association_with_transcript=0bp_to_ENST00000361346,ENST00000361776,ENST00000445886,NM_001198852,NM_014947,uc001chf.2,uc001chh.1_5end | ||
|cluster_id=chr1:42800860..42800912,- | |||
|description=CAGE_peak_1_at_FOXJ3_5end | |description=CAGE_peak_1_at_FOXJ3_5end | ||
|id=chr1:42800860..42800912,- | |id=chr1:42800860..42800912,- | ||
|ontology_enrichment_celltype=CL:0000037!2.54e-11!172;CL:0000566!2.54e-11!172;CL:0000738!4.80e-10!140;CL:0002032!7.50e-10!165;CL:0000837!7.50e-10!165;CL:0000988!4.92e-09!182 | |ontology_enrichment_celltype=CL:0000037!2.54e-11!172;CL:0000566!2.54e-11!172;CL:0000738!4.80e-10!140;CL:0002032!7.50e-10!165;CL:0000837!7.50e-10!165;CL:0000988!4.92e-09!182 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.45e-11,168;CL:0000738,4.40e-10,136;CL:0002032,7.37e-10,161;CL:0000837,7.37e-10,161;CL:0000988,2.52e-09,177 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.86e-08;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.64e-27!115;UBERON:0001049!1.81e-16!57;UBERON:0005068!1.81e-16!57;UBERON:0006241!1.81e-16!57;UBERON:0007135!1.81e-16!57;UBERON:0003080!1.13e-15!42;UBERON:0001017!1.63e-15!82;UBERON:0002780!2.01e-15!41;UBERON:0001890!2.01e-15!41;UBERON:0006240!2.01e-15!41;UBERON:0000073!5.20e-15!94;UBERON:0001016!5.20e-15!94;UBERON:0005743!1.39e-14!86;UBERON:0000955!1.92e-14!69;UBERON:0006238!1.92e-14!69;UBERON:0001893!1.43e-13!34;UBERON:0002791!4.68e-13!33;UBERON:0002020!7.38e-13!34;UBERON:0003528!7.38e-13!34;UBERON:0001869!8.38e-13!32;UBERON:0002616!1.66e-12!59;UBERON:0002346!2.45e-11!90;UBERON:0002619!7.99e-11!22;UBERON:0003075!1.26e-10!86;UBERON:0007284!1.26e-10!86;UBERON:0001950!1.83e-10!20;UBERON:0000956!1.05e-09!25;UBERON:0000203!1.05e-09!25;UBERON:0003056!4.53e-08!61;UBERON:0000924!7.32e-08!173;UBERON:0006601!7.32e-08!173;UBERON:0004121!2.63e-07!169;UBERON:0000153!8.92e-07!129;UBERON:0007811!8.92e-07!129 | |ontology_enrichment_uberon=UBERON:0007023!5.64e-27!115;UBERON:0001049!1.81e-16!57;UBERON:0005068!1.81e-16!57;UBERON:0006241!1.81e-16!57;UBERON:0007135!1.81e-16!57;UBERON:0003080!1.13e-15!42;UBERON:0001017!1.63e-15!82;UBERON:0002780!2.01e-15!41;UBERON:0001890!2.01e-15!41;UBERON:0006240!2.01e-15!41;UBERON:0000073!5.20e-15!94;UBERON:0001016!5.20e-15!94;UBERON:0005743!1.39e-14!86;UBERON:0000955!1.92e-14!69;UBERON:0006238!1.92e-14!69;UBERON:0001893!1.43e-13!34;UBERON:0002791!4.68e-13!33;UBERON:0002020!7.38e-13!34;UBERON:0003528!7.38e-13!34;UBERON:0001869!8.38e-13!32;UBERON:0002616!1.66e-12!59;UBERON:0002346!2.45e-11!90;UBERON:0002619!7.99e-11!22;UBERON:0003075!1.26e-10!86;UBERON:0007284!1.26e-10!86;UBERON:0001950!1.83e-10!20;UBERON:0000956!1.05e-09!25;UBERON:0000203!1.05e-09!25;UBERON:0003056!4.53e-08!61;UBERON:0000924!7.32e-08!173;UBERON:0006601!7.32e-08!173;UBERON:0004121!2.63e-07!169;UBERON:0000153!8.92e-07!129;UBERON:0007811!8.92e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0001893;1.30e-11;34!UBERON:0001869;1.80e-11;32!UBERON:0002791;1.95e-11;32!UBERON:0002780;2.18e-11;41!UBERON:0001890;2.18e-11;41!UBERON:0003528;4.78e-11;34!UBERON:0002020;4.78e-11;34!UBERON:0002619;8.22e-11;22!UBERON:0001950;1.84e-10;20!UBERON:0000956;1.13e-09;25!UBERON:0000203;1.13e-09;25!UBERON:0000073;1.80e-09;53!UBERON:0002616;1.80e-09;53!UBERON:0007023;3.40e-08;114!UBERON:0000955;1.14e-07;68!UBERON:0001016;1.26e-07;83!UBERON:0001017;2.83e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.62e-26,114;UBERON:0001049,3.30e-16,56;UBERON:0005068,3.30e-16,56;UBERON:0006241,3.30e-16,56;UBERON:0007135,3.30e-16,56;UBERON:0001016,1.25e-15,89;UBERON:0000073,1.52e-15,53;UBERON:0002616,1.52e-15,53;UBERON:0002780,2.01e-15,41;UBERON:0001890,2.01e-15,41;UBERON:0003080,2.01e-15,41;UBERON:0006240,2.01e-15,41;UBERON:0001017,2.95e-15,81;UBERON:0000955,3.47e-14,68;UBERON:0006238,3.47e-14,68;UBERON:0001893,1.43e-13,34;UBERON:0003528,7.38e-13,34;UBERON:0002020,7.38e-13,34;UBERON:0001869,8.38e-13,32;UBERON:0002791,1.20e-12,32;UBERON:0002619,7.99e-11,22;UBERON:0001950,1.83e-10,20;UBERON:0002346,9.91e-10,86;UBERON:0000956,1.05e-09,25;UBERON:0000203,1.05e-09,25;UBERON:0003075,4.79e-09,82;UBERON:0007284,4.79e-09,82;UBERON:0003056,8.25e-08,61;UBERON:0004121,8.13e-07,171;UBERON:0000924,8.13e-07,171;UBERON:0006601,8.13e-07,171 | |||
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| ||
|short_description=p1@FOXJ3 | |short_description=p1@FOXJ3 | ||
}} | }} |
Latest revision as of 03:07, 18 September 2015
Short description: | p1@FOXJ3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FOXJ3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000361346, ENST00000361776, ENST00000445886, NM_001198852, NM_014947, uc001chf.2, uc001chh.1_5end |
EntrezGene: | FOXJ3 |
HGNC: | 29178 |
UniProt: | Q9UPW0C9JVP0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.45e-11 | 168 |
leukocyte | 4.40e-10 | 136 |
hematopoietic oligopotent progenitor cell | 7.37e-10 | 161 |
hematopoietic multipotent progenitor cell | 7.37e-10 | 161 |
hematopoietic cell | 2.52e-09 | 177 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.62e-26 | 114 |
neural tube | 3.30e-16 | 56 |
neural rod | 3.30e-16 | 56 |
future spinal cord | 3.30e-16 | 56 |
neural keel | 3.30e-16 | 56 |
nervous system | 1.25e-15 | 89 |
regional part of nervous system | 1.52e-15 | 53 |
regional part of brain | 1.52e-15 | 53 |
regional part of forebrain | 2.01e-15 | 41 |
forebrain | 2.01e-15 | 41 |
anterior neural tube | 2.01e-15 | 41 |
future forebrain | 2.01e-15 | 41 |
central nervous system | 2.95e-15 | 81 |
brain | 3.47e-14 | 68 |
future brain | 3.47e-14 | 68 |
telencephalon | 1.43e-13 | 34 |
brain grey matter | 7.38e-13 | 34 |
gray matter | 7.38e-13 | 34 |
cerebral hemisphere | 8.38e-13 | 32 |
regional part of telencephalon | 1.20e-12 | 32 |
regional part of cerebral cortex | 7.99e-11 | 22 |
neocortex | 1.83e-10 | 20 |
neurectoderm | 9.91e-10 | 86 |
cerebral cortex | 1.05e-09 | 25 |
pallium | 1.05e-09 | 25 |
neural plate | 4.79e-09 | 82 |
presumptive neural plate | 4.79e-09 | 82 |
pre-chordal neural plate | 8.25e-08 | 61 |
ectoderm-derived structure | 8.13e-07 | 171 |
ectoderm | 8.13e-07 | 171 |
presumptive ectoderm | 8.13e-07 | 171 |