FFCP PHASE1:Hg19::chr5:53606396..53606431,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54622 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25945 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NXU5 | |||
|association_with_transcript=0bp_to_ENST00000502271,ENST00000504924,ENST00000505383,ENST00000505630,ENST00000507646,NM_019087,uc003jpg.1,uc010ivs.1_5end | |||
|cluster_id=chr5:53606396..53606431,- | |||
|coexpression_cluster_id=C4505 | |||
|description=CAGE_peak_1_at_ARL15_5end | |||
|id=chr5:53606396..53606431,- | |||
|ontology_enrichment_celltype=CL:0000738!4.06e-12!140;CL:0002087!1.47e-10!119;CL:0002031!2.17e-09!124;CL:0000037!4.68e-09!172;CL:0000566!4.68e-09!172;CL:0002032!2.56e-08!165;CL:0000837!2.56e-08!165;CL:0000766!6.68e-08!76 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.00e-13,136;CL:0002087,2.17e-11,115;CL:0002031,3.93e-10,120;CL:0000037,1.23e-09,168;CL:0002032,7.05e-09,161;CL:0000837,7.05e-09,161;CL:0000766,7.86e-09,72;CL:0000473,1.03e-07,48;CL:0000234,1.03e-07,48;CL:0000988,2.84e-07,177;CL:0000839,3.39e-07,66;CL:0002194,3.66e-07,59;CL:0000576,3.66e-07,59;CL:0000040,3.66e-07,59;CL:0000559,3.66e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.79e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.99e-32!115;UBERON:0001017!2.06e-20!82;UBERON:0005743!1.74e-19!86;UBERON:0000073!8.23e-18!94;UBERON:0001016!8.23e-18!94;UBERON:0001049!2.99e-17!57;UBERON:0005068!2.99e-17!57;UBERON:0006241!2.99e-17!57;UBERON:0007135!2.99e-17!57;UBERON:0000955!1.08e-15!69;UBERON:0006238!1.08e-15!69;UBERON:0003080!1.99e-15!42;UBERON:0002780!4.25e-15!41;UBERON:0001890!4.25e-15!41;UBERON:0006240!4.25e-15!41;UBERON:0002616!1.24e-13!59;UBERON:0002020!2.15e-12!34;UBERON:0003528!2.15e-12!34;UBERON:0001893!2.73e-12!34;UBERON:0001869!3.18e-12!32;UBERON:0002619!3.37e-12!22;UBERON:0002791!7.05e-12!33;UBERON:0001950!4.51e-11!20;UBERON:0000956!6.66e-11!25;UBERON:0000203!6.66e-11!25;UBERON:0003075!4.33e-10!86;UBERON:0007284!4.33e-10!86;UBERON:0002346!6.75e-10!90;UBERON:0003056!7.31e-08!61;UBERON:0000153!9.96e-08!129;UBERON:0007811!9.96e-08!129;UBERON:0002390!6.40e-07!102;UBERON:0003061!6.40e-07!102;UBERON:0002193!7.65e-07!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.91e-12;22!UBERON:0002780;2.47e-11;41!UBERON:0001890;2.47e-11;41!UBERON:0001869;2.90e-11;32!UBERON:0001950;3.85e-11;20!UBERON:0000956;4.85e-11;25!UBERON:0000203;4.85e-11;25!UBERON:0002791;6.35e-11;32!UBERON:0003528;7.46e-11;34!UBERON:0002020;7.46e-11;34!UBERON:0001893;1.28e-10;34!UBERON:0000073;1.81e-09;53!UBERON:0002616;1.81e-09;53!UBERON:0007023;2.00e-09;114!UBERON:0001017;3.58e-08;75!UBERON:0000955;1.25e-07;68!UBERON:0001016;2.58e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.28e-31,114;UBERON:0001017,4.50e-20,81;UBERON:0001016,3.00e-18,89;UBERON:0001049,6.47e-17,56;UBERON:0005068,6.47e-17,56;UBERON:0006241,6.47e-17,56;UBERON:0007135,6.47e-17,56;UBERON:0000955,2.28e-15,68;UBERON:0006238,2.28e-15,68;UBERON:0000073,2.38e-15,53;UBERON:0002616,2.38e-15,53;UBERON:0002780,4.25e-15,41;UBERON:0001890,4.25e-15,41;UBERON:0003080,4.25e-15,41;UBERON:0006240,4.25e-15,41;UBERON:0003528,2.15e-12,34;UBERON:0002020,2.15e-12,34;UBERON:0001893,2.72e-12,34;UBERON:0001869,3.18e-12,32;UBERON:0002619,3.37e-12,22;UBERON:0002791,6.04e-12,32;UBERON:0001950,4.50e-11,20;UBERON:0000956,6.65e-11,25;UBERON:0000203,6.65e-11,25;UBERON:0003075,1.24e-09,82;UBERON:0007284,1.24e-09,82;UBERON:0002346,1.93e-09,86;UBERON:0002390,1.35e-07,98;UBERON:0003061,1.35e-07,98;UBERON:0002193,1.80e-07,108;UBERON:0003056,2.47e-07,61;UBERON:0011216,3.88e-07,223 | |||
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| |||
|short_description=p1@ARL15 | |||
}} |
Latest revision as of 03:09, 18 September 2015
Short description: | p1@ARL15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARL15_5end |
Coexpression cluster: | C4505_acute_pineal_skin_occipital_parietal_colon_brain |
Association with transcript: | 0bp_to_ENST00000502271, ENST00000504924, ENST00000505383, ENST00000505630, ENST00000507646, NM_019087, uc003jpg.1, uc010ivs.1_5end |
EntrezGene: | ARL15 |
HGNC: | 25945 |
UniProt: | Q9NXU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 6.00e-13 | 136 |
nongranular leukocyte | 2.17e-11 | 115 |
hematopoietic lineage restricted progenitor cell | 3.93e-10 | 120 |
hematopoietic stem cell | 1.23e-09 | 168 |
hematopoietic oligopotent progenitor cell | 7.05e-09 | 161 |
hematopoietic multipotent progenitor cell | 7.05e-09 | 161 |
myeloid leukocyte | 7.86e-09 | 72 |
defensive cell | 1.03e-07 | 48 |
phagocyte | 1.03e-07 | 48 |
hematopoietic cell | 2.84e-07 | 177 |
myeloid lineage restricted progenitor cell | 3.39e-07 | 66 |
monopoietic cell | 3.66e-07 | 59 |
monocyte | 3.66e-07 | 59 |
monoblast | 3.66e-07 | 59 |
promonocyte | 3.66e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.28e-31 | 114 |
central nervous system | 4.50e-20 | 81 |
nervous system | 3.00e-18 | 89 |
neural tube | 6.47e-17 | 56 |
neural rod | 6.47e-17 | 56 |
future spinal cord | 6.47e-17 | 56 |
neural keel | 6.47e-17 | 56 |
brain | 2.28e-15 | 68 |
future brain | 2.28e-15 | 68 |
regional part of nervous system | 2.38e-15 | 53 |
regional part of brain | 2.38e-15 | 53 |
regional part of forebrain | 4.25e-15 | 41 |
forebrain | 4.25e-15 | 41 |
anterior neural tube | 4.25e-15 | 41 |
future forebrain | 4.25e-15 | 41 |
brain grey matter | 2.15e-12 | 34 |
gray matter | 2.15e-12 | 34 |
telencephalon | 2.72e-12 | 34 |
cerebral hemisphere | 3.18e-12 | 32 |
regional part of cerebral cortex | 3.37e-12 | 22 |
regional part of telencephalon | 6.04e-12 | 32 |
neocortex | 4.50e-11 | 20 |
cerebral cortex | 6.65e-11 | 25 |
pallium | 6.65e-11 | 25 |
neural plate | 1.24e-09 | 82 |
presumptive neural plate | 1.24e-09 | 82 |
neurectoderm | 1.93e-09 | 86 |
hematopoietic system | 1.35e-07 | 98 |
blood island | 1.35e-07 | 98 |
hemolymphoid system | 1.80e-07 | 108 |
pre-chordal neural plate | 2.47e-07 | 61 |
organ system subdivision | 3.88e-07 | 223 |