FFCP PHASE1:Hg19::chr5:56469653..56469722,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:56469653..56469722,+ to FFCP PHASE1:Hg19::chr5:56469653..56469722,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=65056 | |EntrezGene=65056 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29520 | |HGNC=29520 | ||
|TSSclassifier=strong | |||
|UniProt=D4PHA4,Q86WP2 | |UniProt=D4PHA4,Q86WP2 | ||
|association_with_transcript=-52bp_to_ENST00000424459,NM_001203246,NM_022913,uc003jrh.3,uc003jri.3,uc010iwg.2_5end | |||
|cluster_id=chr5:56469653..56469722,+ | |||
|coexpression_cluster_id=C1055 | |||
|description=CAGE_peak_2_at_GPBP1_5end | |||
|id=chr5:56469653..56469722,+ | |||
|ontology_enrichment_celltype=CL:0000738!7.60e-35!140;CL:0002031!1.04e-28!124;CL:0002087!1.58e-28!119;CL:0000037!2.13e-25!172;CL:0000566!2.13e-25!172;CL:0002032!3.02e-24!165;CL:0000837!3.02e-24!165;CL:0000542!6.23e-23!53;CL:0000051!6.23e-23!53;CL:0000838!2.40e-22!52;CL:0000988!1.04e-21!182;CL:0000945!2.53e-11!24;CL:0000826!2.53e-11!24;CL:0000766!4.92e-11!76;CL:0000084!1.03e-10!25;CL:0000827!1.03e-10!25;CL:0000791!2.87e-10!18;CL:0000789!2.87e-10!18;CL:0002420!2.87e-10!18;CL:0002419!2.87e-10!18;CL:0000790!2.87e-10!18;CL:0002057!5.18e-10!42;CL:0000236!3.59e-09!14;CL:0000860!3.75e-09!45;CL:0000839!7.54e-09!70;CL:0000557!2.81e-08!71;CL:0002009!9.18e-08!65;CL:0002194!1.50e-07!63;CL:0000576!1.50e-07!63;CL:0000040!1.50e-07!63;CL:0000559!1.50e-07!63;CL:0000625!4.09e-07!11;CL:0000763!6.27e-07!112;CL:0000049!6.27e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.95e-13;53!CL:0000945;2.25e-11;24!CL:0000084;9.49e-11;25!CL:0002087;1.78e-10;104!CL:0000791;2.62e-10;18!CL:0000789;2.62e-10;18!CL:0002419;2.62e-10;18!CL:0000236;7.51e-09;13!CL:0000860;1.14e-08;33!CL:0002057;1.14e-08;33!CL:0000738;8.67e-08;136!CL:0000625;3.69e-07;11!CL:0000576;6.74e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.28e-36,136;CL:0002031,3.71e-30,120;CL:0002087,5.07e-30,115;CL:0000037,1.91e-26,168;CL:0002032,2.72e-25,161;CL:0000837,2.72e-25,161;CL:0000988,4.32e-23,177;CL:0000542,6.19e-23,53;CL:0000051,6.19e-23,53;CL:0000838,2.38e-22,52;CL:0000766,4.98e-12,72;CL:0000945,2.52e-11,24;CL:0000826,2.52e-11,24;CL:0000084,1.02e-10,25;CL:0000827,1.02e-10,25;CL:0000791,2.87e-10,18;CL:0000789,2.87e-10,18;CL:0002420,2.87e-10,18;CL:0002419,2.87e-10,18;CL:0000790,2.87e-10,18;CL:0000860,5.16e-10,42;CL:0002057,5.16e-10,42;CL:0000839,9.92e-10,66;CL:0000236,3.58e-09,14;CL:0000557,4.23e-09,67;CL:0002009,1.35e-08,61;CL:0002194,2.19e-08,59;CL:0000576,2.19e-08,59;CL:0000040,2.19e-08,59;CL:0000559,2.19e-08,59;CL:0000473,2.34e-08,48;CL:0000234,2.34e-08,48;CL:0000763,1.85e-07,108;CL:0000049,1.85e-07,108;CL:0000625,4.08e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000051;1.95e-13;53!CL:0000790;2.62e-10;18!CL:0002057;1.69e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.97e-27!115;UBERON:0001049!2.09e-14!57;UBERON:0005068!2.09e-14!57;UBERON:0006241!2.09e-14!57;UBERON:0007135!2.09e-14!57;UBERON:0002390!2.57e-12!102;UBERON:0003061!2.57e-12!102;UBERON:0001017!4.88e-12!82;UBERON:0003080!5.84e-12!42;UBERON:0002193!9.63e-12!112;UBERON:0002780!1.07e-11!41;UBERON:0001890!1.07e-11!41;UBERON:0006240!1.07e-11!41;UBERON:0005743!1.78e-11!86;UBERON:0000073!7.40e-11!94;UBERON:0001016!7.40e-11!94;UBERON:0002616!9.39e-11!59;UBERON:0000955!1.54e-09!69;UBERON:0006238!1.54e-09!69;UBERON:0002020!1.26e-08!34;UBERON:0003528!1.26e-08!34;UBERON:0001893!1.86e-08!34;UBERON:0002791!3.01e-08!33;UBERON:0002346!3.91e-08!90;UBERON:0003075!8.89e-08!86;UBERON:0007284!8.89e-08!86;UBERON:0001869!1.30e-07!32;UBERON:0002405!8.99e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.34e-08;41!UBERON:0001890;1.34e-08;41!UBERON:0000073;4.02e-08;53!UBERON:0002616;4.02e-08;53!UBERON:0007023;4.14e-08;114!UBERON:0003528;1.74e-07;34!UBERON:0002020;1.74e-07;34!UBERON:0001893;2.89e-07;34!UBERON:0002791;4.06e-07;32!UBERON:0001869;5.98e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.28e-27,114;UBERON:0001049,3.88e-14,56;UBERON:0005068,3.88e-14,56;UBERON:0006241,3.88e-14,56;UBERON:0007135,3.88e-14,56;UBERON:0002390,3.38e-13,98;UBERON:0003061,3.38e-13,98;UBERON:0000073,5.72e-13,53;UBERON:0002616,5.72e-13,53;UBERON:0002193,1.50e-12,108;UBERON:0001017,8.72e-12,81;UBERON:0002780,1.07e-11,41;UBERON:0001890,1.07e-11,41;UBERON:0003080,1.07e-11,41;UBERON:0006240,1.07e-11,41;UBERON:0001016,4.27e-11,89;UBERON:0000955,2.68e-09,68;UBERON:0006238,2.68e-09,68;UBERON:0003528,1.26e-08,34;UBERON:0002020,1.26e-08,34;UBERON:0001893,1.85e-08,34;UBERON:0002405,2.34e-08,93;UBERON:0002346,5.68e-08,86;UBERON:0002791,7.57e-08,32;UBERON:0003075,1.29e-07,82;UBERON:0007284,1.29e-07,82;UBERON:0001869,1.29e-07,32;UBERON:0002371,7.21e-07,76 | |||
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| ||
|short_description=p2@GPBP1 | |||
}} | }} |
Latest revision as of 05:45, 18 September 2015
Short description: | p2@GPBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GPBP1_5end |
Coexpression cluster: | C1055_CD19_thymus_CD4_CD8_Neutrophils_Natural_cerebellum |
Association with transcript: | -52bp_to_ENST00000424459, NM_001203246, NM_022913, uc003jrh.3, uc003jri.3, uc010iwg.2_5end |
EntrezGene: | GPBP1 |
HGNC: | 29520 |
UniProt: | D4PHA4Q86WP2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.28e-27 | 114 |
neural tube | 3.88e-14 | 56 |
neural rod | 3.88e-14 | 56 |
future spinal cord | 3.88e-14 | 56 |
neural keel | 3.88e-14 | 56 |
hematopoietic system | 3.38e-13 | 98 |
blood island | 3.38e-13 | 98 |
regional part of nervous system | 5.72e-13 | 53 |
regional part of brain | 5.72e-13 | 53 |
hemolymphoid system | 1.50e-12 | 108 |
central nervous system | 8.72e-12 | 81 |
regional part of forebrain | 1.07e-11 | 41 |
forebrain | 1.07e-11 | 41 |
anterior neural tube | 1.07e-11 | 41 |
future forebrain | 1.07e-11 | 41 |
nervous system | 4.27e-11 | 89 |
brain | 2.68e-09 | 68 |
future brain | 2.68e-09 | 68 |
brain grey matter | 1.26e-08 | 34 |
gray matter | 1.26e-08 | 34 |
telencephalon | 1.85e-08 | 34 |
immune system | 2.34e-08 | 93 |
neurectoderm | 5.68e-08 | 86 |
regional part of telencephalon | 7.57e-08 | 32 |
neural plate | 1.29e-07 | 82 |
presumptive neural plate | 1.29e-07 | 82 |
cerebral hemisphere | 1.29e-07 | 32 |
bone marrow | 7.21e-07 | 76 |