FFCP PHASE1:Hg19::chr11:58939589..58939610,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23220 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29151 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y2E6 | |||
|association_with_transcript=-201bp_to_NM_015177,uc001nns.2_5end | |||
|cluster_id=chr11:58939589..58939610,+ | |||
|coexpression_cluster_id=C3164 | |||
|description=CAGE_peak_3_at_DTX4_5end | |||
|id=chr11:58939589..58939610,+ | |||
|ontology_enrichment_celltype=CL:0000945!1.38e-07!24;CL:0000826!1.38e-07!24;CL:0000236!4.22e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000945;3.32e-08;24!CL:0000236;1.11e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,3.45e-08,24;CL:0000826,3.45e-08,24;CL:0000236,6.12e-08,14 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.06e-14!115;UBERON:0004921!3.70e-13!129;UBERON:0004185!3.70e-13!129;UBERON:0004119!1.54e-12!169;UBERON:0000925!1.54e-12!169;UBERON:0006595!1.54e-12!169;UBERON:0001007!2.05e-11!155;UBERON:0001555!2.05e-11!155;UBERON:0007026!2.05e-11!155;UBERON:0001049!1.08e-09!57;UBERON:0005068!1.08e-09!57;UBERON:0006241!1.08e-09!57;UBERON:0007135!1.08e-09!57;UBERON:0003075!8.06e-09!86;UBERON:0007284!8.06e-09!86;UBERON:0000077!8.62e-09!130;UBERON:0001017!1.29e-08!82;UBERON:0005743!1.30e-08!86;UBERON:0000064!3.11e-08!219;UBERON:0002346!3.97e-08!90;UBERON:0002780!3.97e-08!41;UBERON:0001890!3.97e-08!41;UBERON:0006240!3.97e-08!41;UBERON:0003080!4.52e-08!42;UBERON:0005409!5.14e-08!35;UBERON:0002616!2.20e-07!59;UBERON:0000073!2.29e-07!94;UBERON:0001016!2.29e-07!94;UBERON:0002020!2.80e-07!34;UBERON:0003528!2.80e-07!34;UBERON:0001893!3.04e-07!34;UBERON:0004121!3.06e-07!169;UBERON:0002791!4.91e-07!33;UBERON:0000924!7.34e-07!173;UBERON:0006601!7.34e-07!173;UBERON:0003056!7.84e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;5.50e-12;33!UBERON:0000160;1.44e-09;17!UBERON:0005409;1.44e-08;22!UBERON:0002619;9.32e-08;22!UBERON:0001950;7.52e-07;20!UBERON:0000956;8.73e-07;25!UBERON:0000203;8.73e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011216,5.50e-21,223;UBERON:0004921,3.33e-15,118;UBERON:0001007,1.70e-12,145;UBERON:0001555,1.70e-12,145;UBERON:0007026,1.70e-12,145;UBERON:0004119,4.39e-12,160;UBERON:0000925,4.39e-12,160;UBERON:0006595,4.39e-12,160;UBERON:0007023,1.42e-11,114;UBERON:0001049,2.23e-10,56;UBERON:0005068,2.23e-10,56;UBERON:0006241,2.23e-10,56;UBERON:0007135,2.23e-10,56;UBERON:0005409,8.53e-10,25;UBERON:0000160,2.03e-09,17;UBERON:0001017,2.04e-09,81;UBERON:0000073,3.38e-09,53;UBERON:0002616,3.38e-09,53;UBERON:0001016,1.68e-08,89;UBERON:0003075,5.79e-08,82;UBERON:0007284,5.79e-08,82;UBERON:0002619,6.33e-08,22;UBERON:0002780,1.21e-07,41;UBERON:0001890,1.21e-07,41;UBERON:0003080,1.21e-07,41;UBERON:0006240,1.21e-07,41;UBERON:0003528,2.14e-07,34;UBERON:0002020,2.14e-07,34;UBERON:0001893,2.35e-07,34;UBERON:0002346,2.70e-07,86;UBERON:0001041,3.78e-07,87;UBERON:0000956,4.72e-07,25;UBERON:0000203,4.72e-07,25;UBERON:0001950,5.59e-07,20;UBERON:0003056,9.13e-07,61 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.140954404095971,0,0.893922188854576,0,2.53299878168311,0,1.04474251279935,0.737201809504527,2.09340350391728,2.18441372130172,2.90143676051299,0,0,0,0.602694528023977,0,0.487932798790507,0.246242116153576,0,0,0.572471974262113,0.410623275218653,1.88313959392204,5.57817861960044,5.33653831424647,4.171671409625,0.786728553697808,0,1.70297735647684,1.83884244895785,1.204823675113,1.47901604066715,0.774672005803016,1.13735385989937,1.17440175733939,1.66198622559563,1.80490002723128,3.25516306073778,0.447830948479849,0,0.257575567634187,1.30858414901608,1.13362783106643,0.970336244751265,0.697287110717054,0.411167888021826,1.23882548358041,0,0.512321413058201,0,1.37898272294647,1.29096936716765,0,0,1.09162460023138,0.224723484445085,0,0.320929027076094,0,0.329851300186716,0,0,1.16083695451434,1.13477044938228,0.622822248995575,0.75374599577023,0,0.217188844705117,1.21079900526674,0.736555271975129,0.632924774881769,0.211255286311942,0.425208599930087,0.419317291016752,0.112328631146495,0,1.28580469357664,0.285012743741249,0,0.365328307529268,3.51992488922645,5.46138611262132,7.11607403090844,3.41384178053206,6.4063357925762,5.74752439954483,5.94940385506376,7.63243003628291,9.10740750575117,12.3319809767897,11.0859236156316,0,0,0.790152254325231,0,0.393010762749165,0.411202997999018,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0.296573126324121,0,0,0,0,0,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0.383959833463255,0,0,0.821127996921047,0.201606743224732,0.267440195783507,0.144824403882799,0,0.670700859703636,0.767175371061182,0,0.50133791063589,0,0,0,0.378139268656271,0.886917589850256,0.614843499851882,1.76821751921912,1.82147644146271,2.22470665670658,0,0.522389211897802,0.664789802594326,1.90792499444274,2.85997455390064,1.48583000531826,0.198762407366705,0,0,0,0,0,0.417989933073621,0.258416759169329,0,1.00416183829401,3.22263453687318,0.760272105718513,10.7387305321195,0,0,0,0,0,0,0,0.366403487860815,9.22462922052443,7.75560528296651,5.23312862571041,0.496971951695318,0,0,0,0,0,0,0.24666754841716,0.311211035399766,0,0,0.302714855289863,0,0.234321431833797,0.312160076830321,1.71141546463335,0,0.23486899728753,0.323745888736263,0,0.204154171254893,0.245668634623536,0.309977343527296,0,0,0,0,0,0.250237039743928,0.277064115484183,0,0,0,0.113432183160021,0.179389635688862,0.213557388818567,0.423863802319124,0,0.103052529238439,0,0.18611685633159,0,0,0,0.184099797284599,0.161646056818812,0,0.302256294682921,0.169560592310488,1.35282597214308,0.545492241181669,3.15485054927904,2.31750041646231,3.31324420803713,3.48581828608555,6.73796857599908,3.28017106138317,1.45990943630332,0,1.28648187638577,0,0,0,2.83936320095625,2.52877035117153,1.44606617930089,2.09558548191549,3.05031221729369,2.37270619111097,0.674156540800822,1.37355025587742,1.53898862778556,0.738155454624648,0,0,0,5.07020139287323,14.7424082501644,3.54473944008842,2.20731549707325,4.79654910318143,0.343135620597051,0.658501712451753,1.1240175325762,0.402115889646523,1.48141512253647,0,2.07986957055916,0,3.24605133930215,0.117408694235822,1.87676382089396,1.38895653772983,2.66355813128438,2.37061319387782,1.71697232418975,0.738651018262192,2.57404691653161,1.0404181360211,0,1.00789276919316,1.13420077793909,0.268675568108545,0.290633938513962,0.766765358330422,0.492663237895943,0,0.207328115540772,0.288239906833923,0.25248486685276,0.380987365753014,0,0,1.71072446022705,0.411309970813294,0.300343057843917,1.71495859578347,0.448524337381443,0,0.07333828582095,0,0,0,0.26593811658487,0,0,0,0,0.428933980974443,2.17048642156577,2.46972101034231,0,0.355391948742546,1.58390374586686,0.904318131178758,0,1.59956785891291,0,0.502257091432126,0,0.239624855491583,0,0,0,0.821905290201534,0.537182889719687,0,0.197030760201927,0.215627574859517,0.256686072559497,1.52456774533478,6.50699269288109,0.773288812777695,5.19300422536481,1.91381625495949,6.74106321552464,8.97484377612075,2.48649308061621,0,0,0,0.207970861530807,0,0.157702415033935,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0,0,0,0.686286847621712,0,0.215714200818617,0.640365346820666,0.303127571446259,4.99306318531491,0.907170879989041,0.248107807818777,0.460385919864187,0.561320188866147,0,0,0.321707842287215,0,0,0.355123450626254,0.164254312027618,0,0,3.50492403815704,2.20557117333613,3.22283461275637,0.68888668898764,0,1.83574180943194,0.902399225814824,0.462092022626489,0,1.46139224653261,0.633309773357254,0,0,0,1.54227252690289,0.270946437543853,1.50506932156456,0.764628819135115,0.831076008928724,0.671624264166535,0,0,0.769350375349168,1.64007322849853,0,3.19427136107939,2.47237555009527,1.65018999841176,3.44559322797703,1.95018073810956,3.21367859688319,0.48335359146061,0.308097234229289,0.460511024178389,0.137836572484531,0.107420244868274,0.580066775656914,0.340906509664404,1.24644849905432,0.495854746082934,0.960950336825531,1.02090169995667,0.910420027699949,0,0.31481234683064,0,0,0,0,0,0,0,0.31637942471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| |||
|short_description=p3@DTX4 | |||
}} |
Latest revision as of 11:57, 18 September 2015
Short description: | p3@DTX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DTX4_5end |
Coexpression cluster: | C3164_pharyngeal_temporal_occipital_Hepatocyte_rectum_optic_brain |
Association with transcript: | -201bp_to_NM_015177, uc001nns.2_5end |
EntrezGene: | DTX4 |
HGNC: | 29151 |
UniProt: | Q9Y2E6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 3.45e-08 | 24 |
pro-B cell | 3.45e-08 | 24 |
B cell | 6.12e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
organ system subdivision | 5.50e-21 | 223 |
subdivision of digestive tract | 3.33e-15 | 118 |
digestive system | 1.70e-12 | 145 |
digestive tract | 1.70e-12 | 145 |
primitive gut | 1.70e-12 | 145 |
endoderm-derived structure | 4.39e-12 | 160 |
endoderm | 4.39e-12 | 160 |
presumptive endoderm | 4.39e-12 | 160 |
adult organism | 1.42e-11 | 114 |
neural tube | 2.23e-10 | 56 |
neural rod | 2.23e-10 | 56 |
future spinal cord | 2.23e-10 | 56 |
neural keel | 2.23e-10 | 56 |
gastrointestinal system | 8.53e-10 | 25 |
intestine | 2.03e-09 | 17 |
central nervous system | 2.04e-09 | 81 |
regional part of nervous system | 3.38e-09 | 53 |
regional part of brain | 3.38e-09 | 53 |
nervous system | 1.68e-08 | 89 |
neural plate | 5.79e-08 | 82 |
presumptive neural plate | 5.79e-08 | 82 |
regional part of cerebral cortex | 6.33e-08 | 22 |
regional part of forebrain | 1.21e-07 | 41 |
forebrain | 1.21e-07 | 41 |
anterior neural tube | 1.21e-07 | 41 |
future forebrain | 1.21e-07 | 41 |
brain grey matter | 2.14e-07 | 34 |
gray matter | 2.14e-07 | 34 |
telencephalon | 2.35e-07 | 34 |
neurectoderm | 2.70e-07 | 86 |
foregut | 3.78e-07 | 87 |
cerebral cortex | 4.72e-07 | 25 |
pallium | 4.72e-07 | 25 |
neocortex | 5.59e-07 | 20 |
pre-chordal neural plate | 9.13e-07 | 61 |