FFCP PHASE1:Hg19::chr1:183441440..183441452,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9887 | |EntrezGene=9887 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16792 | |HGNC=16792 | ||
|TSSclassifier=strong | |||
|UniProt=E9PCE5,B4DRB2,E9PCI0,Q92540,Q6TV06,E9PEH2 | |UniProt=E9PCE5,B4DRB2,E9PCI0,Q92540,Q6TV06,E9PEH2 | ||
|association_with_transcript=-53bp_to_ENST00000456731,NM_001174061,NM_173156,NM_201568,NM_201569_5end | |association_with_transcript=-53bp_to_ENST00000456731,NM_001174061,NM_173156,NM_201568,NM_201569_5end | ||
|cluster_id=chr1:183441440..183441452,+ | |||
|description=CAGE_peak_7_at_SMG7_5end | |description=CAGE_peak_7_at_SMG7_5end | ||
|id=chr1:183441440..183441452,+ | |id=chr1:183441440..183441452,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000039;5.60e-08;7!CL:0000586;5.60e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.71e-08,7;CL:0000586,3.71e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!6.12e-08!143;DOID:305!1.66e-07!106 | |ontology_enrichment_disease=DOID:0050687!6.12e-08!143;DOID:305!1.66e-07!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.83e-26!115;UBERON:0003080!1.88e-13!42;UBERON:0002780!7.04e-13!41;UBERON:0001890!7.04e-13!41;UBERON:0006240!7.04e-13!41;UBERON:0001049!1.79e-12!57;UBERON:0005068!1.79e-12!57;UBERON:0006241!1.79e-12!57;UBERON:0007135!1.79e-12!57;UBERON:0001869!3.11e-12!32;UBERON:0001893!5.07e-12!34;UBERON:0000955!1.75e-11!69;UBERON:0006238!1.75e-11!69;UBERON:0002791!1.98e-11!33;UBERON:0000073!7.42e-11!94;UBERON:0001016!7.42e-11!94;UBERON:0002619!1.08e-10!22;UBERON:0005743!1.40e-10!86;UBERON:0002020!1.40e-10!34;UBERON:0003528!1.40e-10!34;UBERON:0001017!1.81e-10!82;UBERON:0002616!3.44e-10!59;UBERON:0002346!4.21e-10!90;UBERON:0003075!1.09e-09!86;UBERON:0007284!1.09e-09!86;UBERON:0001950!1.47e-09!20;UBERON:0000956!3.43e-09!25;UBERON:0000203!3.43e-09!25;UBERON:0003056!6.96e-09!61;UBERON:0000153!1.76e-07!129;UBERON:0007811!1.76e-07!129 | |ontology_enrichment_uberon=UBERON:0007023!8.83e-26!115;UBERON:0003080!1.88e-13!42;UBERON:0002780!7.04e-13!41;UBERON:0001890!7.04e-13!41;UBERON:0006240!7.04e-13!41;UBERON:0001049!1.79e-12!57;UBERON:0005068!1.79e-12!57;UBERON:0006241!1.79e-12!57;UBERON:0007135!1.79e-12!57;UBERON:0001869!3.11e-12!32;UBERON:0001893!5.07e-12!34;UBERON:0000955!1.75e-11!69;UBERON:0006238!1.75e-11!69;UBERON:0002791!1.98e-11!33;UBERON:0000073!7.42e-11!94;UBERON:0001016!7.42e-11!94;UBERON:0002619!1.08e-10!22;UBERON:0005743!1.40e-10!86;UBERON:0002020!1.40e-10!34;UBERON:0003528!1.40e-10!34;UBERON:0001017!1.81e-10!82;UBERON:0002616!3.44e-10!59;UBERON:0002346!4.21e-10!90;UBERON:0003075!1.09e-09!86;UBERON:0007284!1.09e-09!86;UBERON:0001950!1.47e-09!20;UBERON:0000956!3.43e-09!25;UBERON:0000203!3.43e-09!25;UBERON:0003056!6.96e-09!61;UBERON:0000153!1.76e-07!129;UBERON:0007811!1.76e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.17e-24;32!UBERON:0002619;1.43e-23;22!UBERON:0002791;7.91e-22;32!UBERON:0001893;3.04e-21;34!UBERON:0000956;2.80e-20;25!UBERON:0000203;2.80e-20;25!UBERON:0001950;3.57e-20;20!UBERON:0003528;9.86e-19;34!UBERON:0002020;9.86e-19;34!UBERON:0002780;1.10e-16;41!UBERON:0001890;1.10e-16;41!UBERON:0000178;3.04e-11;15!UBERON:0000179;3.04e-11;15!UBERON:0000463;3.04e-11;15!UBERON:0000073;1.94e-09;53!UBERON:0002616;1.94e-09;53!UBERON:0002021;7.66e-08;5!UBERON:0001870;1.64e-07;3!UBERON:0007023;4.12e-07;114!UBERON:0001872;6.96e-07;5!UBERON:0000349;6.96e-07;5!UBERON:0000473;8.34e-07;8!UBERON:0001017;8.40e-07;75!UBERON:0000955;9.58e-07;68 | |||
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|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0.872338524100369,0,0,0.261185628199839,0,0.697801167972428,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0.246242116153576,0,0.313454721478088,0,0.136874425072884,0.376627918784408,0.229240217243854,0.0821005894499457,0.236132343941038,0.393364276848904,0,0.619264493264304,0,0,0.369754010166788,0.232401601740905,0.284338464974843,0,0.553995408531877,0.601633342410425,0.217010870715852,0.223915474239924,0.32389366601898,0,0.726991193897824,0.755751887377619,0,0.464858073811369,0,0.309706370895104,0,0,0.236482229888585,0.344745680736619,0,0,0,0.545812300115692,0.224723484445085,0.306083892370903,0,0,0,0.797854630486527,0,0.290209238628584,1.13477044938228,0,1.25624332628372,0,0.217188844705117,0.605399502633369,0,0,0.422510572623884,0.850417199860174,0.209658645508376,0.336985893439485,0.450530678524519,0.16072558669708,0.285012743741249,0.59675003159727,0.91332076882317,0,0.546138611262131,0,0,0.400395987036012,0.574752439954483,0,0,1.1384259382189,0.587237189370939,0.382273228125229,2.64342657158052,0,0,1.57367816091066,0.393010762749165,0.205601498999509,0.83593247695339,0.32592226663359,0.473447805734733,0,0.222820913770347,0.294605907474837,0.221533894583621,0,0.25618263945135,0.260118695119756,0.657751618414705,1.38175008892924,0,0.296573126324121,0.535081656179426,1.04535523804977,0.339928028092699,0.383220493601921,0,0.253019692019503,0.318565414324097,1.30216690771284,0,0.451725357233318,0.383959833463255,0,0.236777252044017,1.64225599384209,1.61285394579786,0.534880391567015,1.01377082717959,0,0,0,0,0,0,0.795285947051099,0.486634870302636,0,0,0.087834785693126,1.24430121722827,0,0.370784442784429,0,0.696518949197069,0.398873881556595,0,0,1.11437250398869,0,0,0.347140501607594,0,0.419499436209906,0,0.417989933073621,0,0,0.33472061276467,0.402829317109147,0,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,0,0,0.366403487860815,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,0,0.354668382198357,0,0,0.24666754841716,0.311211035399766,0.269421344139376,0.326923806226917,0.151357427644931,0,0.468642863667593,0.312160076830321,0,0,0.23486899728753,0.161872944368132,0.140450806702248,0.204154171254893,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0.831192346452549,0.438977620880838,0.30648779579902,0.150238058906597,0.113432183160021,0.179389635688862,0,0,0,0.206105058476878,0,0,0.337552664482532,0.292311015483596,0,0,0.161646056818812,0,0.201504196455281,0,0,0.272746120590835,0,0.609868530647977,1.19276791489337,0.232387885739037,0.310983165046111,0.756962552626885,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.330881918197182,0.435758888184812,0.474541238222193,0.674156540800822,0.588664395376038,0,0.738155454624648,0,0,0,0,0,0,0,0.368965315629341,0.171567810298526,0.329250856225877,0,0.201057944823262,0.370353780634118,0.651616610620649,0,0,0.115930404975077,0.117408694235822,0.288732895522148,0,0.190254152234598,0,0,0.738651018262192,1.63802985597466,0.148631162288728,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0.207328115540772,0,0.37872730027914,0.063497894292169,0,0,1.71072446022705,0.102827492703324,0,0,0.112131084345361,0,0.2933531432838,0.387815147273333,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,1.00451418286425,0,0,0,0,0.289562613335158,0.205476322550383,0.179060963239896,0.448340575974109,0.197030760201927,0,0.513372145118994,0.508189248444927,0,0,0.335032530668698,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0.368738337083406,0,0,0,0.620304078368662,0,0.426910231213777,0.606255142892519,0,0,0,0,0,0.512556597022804,0,0.160853921143607,1.48418066444991,0.308419387605311,0,0,0.519254429183621,0,0.120859449591622,0,0.0920809889358963,0.229628896329213,0.182091168006717,0,0,0.15403067420883,0,0,0.105551628892876,1.13733384070897,0.340187410553031,0,0,0.270946437543853,0,0,0,0,1.75407901316748,2.3529190592241,0.256450125116389,0.328014645699706,0.325378394664303,0.824328093181778,0.183138929636687,0.082509499920588,1.72279661398852,0.650060246036521,0,0.096670718292122,0.308097234229289,0,0.413509717453592,0,0.290033387828457,0.170453254832202,0.0890320356467374,0,0.384380134730212,0.638063562472921,0.910420027699949,0.464845549297286,0,0,0,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0.272999822815972,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0.286822704408103,0,0,0,0,0,0.379473173765715,0.349934720244983,0.577332676353072,0,0,0.941438007767792,0,0,0,0.229723400206959,3.55213326462519,3.0585488285695,6.26611905891579,1.90585420366231,2.46817363851717,3.24236655596359,1.62009431171434,5.55187623405989,0.106824071127473,0,0.980160863924127,0.557409525377156,0.144269212976445,0.497992903438899,0.637705090915289,0.399158742865633,0,1.05836791361941,0.324621940274555,0,0.228234679033192,0.313359791546046,0,0,0.321176150207399,0.403599414382095,0.425846237690326,0,0.3072407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| ||
|short_description=p7@SMG7 | |short_description=p7@SMG7 | ||
}} | }} |
Latest revision as of 03:16, 19 September 2015
Short description: | p7@SMG7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SMG7_5end |
Coexpression cluster: | NA |
Association with transcript: | -53bp_to_ENST00000456731, NM_001174061, NM_173156, NM_201568, NM_201569_5end |
EntrezGene: | SMG7 |
HGNC: | 16792 |
UniProt: | E9PCE5B4DRB2E9PCI0Q92540Q6TV06E9PEH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.71e-08 | 7 |
germ cell | 3.71e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 3.09e-26 | 32 |
telencephalon | 2.34e-24 | 34 |
regional part of cerebral cortex | 9.33e-24 | 22 |
regional part of telencephalon | 1.43e-23 | 32 |
adult organism | 1.69e-22 | 114 |
brain grey matter | 7.21e-22 | 34 |
gray matter | 7.21e-22 | 34 |
regional part of forebrain | 3.40e-21 | 41 |
forebrain | 3.40e-21 | 41 |
anterior neural tube | 3.40e-21 | 41 |
future forebrain | 3.40e-21 | 41 |
cerebral cortex | 1.93e-20 | 25 |
pallium | 1.93e-20 | 25 |
neocortex | 2.12e-20 | 20 |
regional part of nervous system | 1.98e-16 | 53 |
regional part of brain | 1.98e-16 | 53 |
neural tube | 3.29e-15 | 56 |
neural rod | 3.29e-15 | 56 |
future spinal cord | 3.29e-15 | 56 |
neural keel | 3.29e-15 | 56 |
brain | 9.56e-14 | 68 |
future brain | 9.56e-14 | 68 |
nervous system | 1.19e-12 | 89 |
pre-chordal neural plate | 2.98e-12 | 61 |
central nervous system | 1.35e-11 | 81 |
blood | 1.68e-11 | 15 |
haemolymphatic fluid | 1.68e-11 | 15 |
organism substance | 1.68e-11 | 15 |
neurectoderm | 1.19e-08 | 86 |
neural plate | 1.87e-08 | 82 |
presumptive neural plate | 1.87e-08 | 82 |
occipital lobe | 6.46e-08 | 5 |
frontal cortex | 3.05e-07 | 3 |
parietal lobe | 4.29e-07 | 5 |
limbic system | 4.73e-07 | 5 |
testis | 7.20e-07 | 8 |