FFCP PHASE1:Hg19::chr4:95263977..95264006,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27306 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17890 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=9bp_to_ENST00000514774_5end | |||
|cluster_id=chr4:95263977..95264006,- | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_HPGDS_5end | |||
|id=chr4:95263977..95264006,- | |||
|ontology_enrichment_celltype=CL:0000763!3.88e-11!112;CL:0000049!3.88e-11!112;CL:0002274!2.91e-07!5;CL:0000457!2.91e-07!5;CL:0002191!2.91e-07!5;CL:0000097!2.91e-07!5;CL:0000831!2.91e-07!5;CL:0002028!2.91e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000097;1.35e-09;5!CL:0000235;3.39e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.36e-09,5;CL:0002028,1.36e-09,5;CL:0000235,3.74e-09,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.10e-62!115;UBERON:0001049!3.60e-23!57;UBERON:0005068!3.60e-23!57;UBERON:0006241!3.60e-23!57;UBERON:0007135!3.60e-23!57;UBERON:0003080!1.43e-18!42;UBERON:0002616!7.13e-18!59;UBERON:0002780!8.36e-18!41;UBERON:0001890!8.36e-18!41;UBERON:0006240!8.36e-18!41;UBERON:0001017!2.09e-15!82;UBERON:0003075!2.70e-15!86;UBERON:0007284!2.70e-15!86;UBERON:0005743!6.94e-15!86;UBERON:0001893!7.13e-15!34;UBERON:0002020!8.01e-15!34;UBERON:0003528!8.01e-15!34;UBERON:0000955!1.18e-14!69;UBERON:0006238!1.18e-14!69;UBERON:0002791!2.73e-14!33;UBERON:0002346!6.63e-14!90;UBERON:0001869!2.43e-13!32;UBERON:0000073!9.64e-13!94;UBERON:0001016!9.64e-13!94;UBERON:0002619!1.11e-12!22;UBERON:0001950!2.35e-11!20;UBERON:0000956!1.86e-10!25;UBERON:0000203!1.86e-10!25;UBERON:0003056!2.85e-10!61;UBERON:0002390!1.19e-08!102;UBERON:0003061!1.19e-08!102;UBERON:0002193!1.04e-07!112;UBERON:0000153!1.91e-07!129;UBERON:0007811!1.91e-07!129;UBERON:0002298!2.72e-07!8;UBERON:0001871!8.56e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.34e-11;114!UBERON:0002780;2.88e-10;41!UBERON:0001890;2.88e-10;41!UBERON:0000073;1.92e-09;53!UBERON:0002616;1.92e-09;53!UBERON:0001893;9.60e-09;34!UBERON:0002619;3.88e-08;22!UBERON:0001869;9.88e-08;32!UBERON:0001950;1.06e-07;20!UBERON:0002791;1.08e-07;32!UBERON:0003528;1.13e-07;34!UBERON:0002020;1.13e-07;34!UBERON:0000956;8.07e-07;25!UBERON:0000203;8.07e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.20e-49,114;UBERON:0001049,1.44e-16,56;UBERON:0005068,1.44e-16,56;UBERON:0006241,1.44e-16,56;UBERON:0007135,1.44e-16,56;UBERON:0000073,5.52e-14,53;UBERON:0002616,5.52e-14,53;UBERON:0002780,5.68e-12,41;UBERON:0001890,5.68e-12,41;UBERON:0003080,5.68e-12,41;UBERON:0006240,5.68e-12,41;UBERON:0003075,9.93e-12,82;UBERON:0007284,9.93e-12,82;UBERON:0001017,1.12e-11,81;UBERON:0002346,9.65e-11,86;UBERON:0001016,2.74e-10,89;UBERON:0001893,3.27e-10,34;UBERON:0000955,9.88e-10,68;UBERON:0006238,9.88e-10,68;UBERON:0003528,3.44e-09,34;UBERON:0002020,3.44e-09,34;UBERON:0002791,9.20e-09,32;UBERON:0001869,1.53e-08,32;UBERON:0011216,3.02e-08,223;UBERON:0002619,4.56e-08,22;UBERON:0010371,4.61e-08,104;UBERON:0001950,1.28e-07,20;UBERON:0010314,1.38e-07,132;UBERON:0003056,1.39e-07,61;UBERON:0000956,9.25e-07,25;UBERON:0000203,9.25e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11373559903575,0.383829398097213,0,0,0,0,0,0,12.9184193307333,0,0,0,0.671746422719773,0.647787332037959,0.77272670290256,0.145398238779565,0,0.242584061187816,0.464858073811369,0,0.309706370895104,0,0.512321413058201,0.709446689665756,0,0.645484683583826,0,0,0,0,0.306083892370903,0.641858054152187,0,0,0.199463657621632,0.426224750532694,0,0,0.622822248995575,0.251248665256743,0,0.65156653411535,0,0.736555271975129,0,0,0,0,0,0.150176892841506,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,26.4342657158052,14.0127140745384,15.8030450865046,0.196709770113833,0.393010762749165,0.205601498999509,0.83593247695339,0,0,0,120.768935263528,0.294605907474837,1.10766947291811,0.541607727530031,37.2745740401715,79.5963207066455,12.4972807498794,21.5553013872962,1.73881851441031,0,0,0,0.566546713487831,0.766440987203842,0.34362744548263,0.253019692019503,0.318565414324097,0,0,1.05402583354441,0.511946444617674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20898734969396,0,0,0.324547393654683,0.174129737299267,2.6591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46217006087397,14.5082644386327,5.35072184239422,0,0,0,0,0,0,4881.30736107301,2405.39516880732,872.229382080028,763.835753109896,809.087755829669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.51366464488333,5.02257091432126,10.5416969741516,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67516265334349,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.647142602455851,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.13927654608617,3.66009631434861,0,0,0,8.75848599005639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.87249745670488,0,0,0,0,1.01489521846434,1.52927441428475,1.13929437434833,1.66762242820452,0.822724546172388,1.94541993357815,1.08006287447623,0,0,0,0,0,0,0,0,101.386320687871,2.8725805519855,3.38677732358213,0.324621940274555,54.7554497321245,0,0,2.50634477090067,0.169291777801603,0,0,0,0,0,0,0,0,0.556812347790485,0,45.9774653409171,0,5.63948020351398,0,15.5298670028208,0,0,0,0.47748896947538,0,0,0.994147647766298,5.48610724001,0,0,0,2.39097585901284,2.76283915531148,0,0,0,0,0,0,0,3.35387579165574,0,0,0.969332746095218,1.66982576691332,0,0,0,4.34999745260876,0,0,0,0,0,0,0.885741385813839,3.85908603601305,0,1.3269511191747,1.47773809476774,1.09692698576986,0,0,4.77091602723542,0,0,0,0,0.638002319463839,0.183195186803725,1.5991043280559,0,54.3151687126786,83.6044759957787,0,0,0,0,143.678667398262,0,0,0,0,1.99052386215701,8.1380959343072,3.05515072466813,0,0,0,3.50485891499521,5.61804353109152,2.10838001152805,0,0,0,0.789168805698781,3.62972148145992,1.53036380815245,6.3186579628488,0,0,0,0,0,0,0,0,0,0,0,3.14508002835654,0,0,0,0,3.4916045935831,0,3.38971111170799,0,0,1.51945910294109,0,0,11.3130087211857,0,0,0,0,0,0,0,0,0,0,0,0,9.58337652243951,1.27746588066972,0,0,3.0721064139948,2.06244381610515,0.717873024576814,0.199679000498991,0,0.669514372325618,1.88113722962834,0,0,0,0,0,0,0,0.795229689809303,6.94637371169036,0,0,0,150.282559556402,232.914388321943,1.39723980313457,0,1.65491985328316,0.996637174564964,0,55.2205005145162,0,6.4322579373603,0,0,0,0,0,0,5.91066149395241,0,0,0.439656701034247,1.32506888912221,0.775697738169303,5.55376927319298,0,0,6.94118181690015,5.50215067848831,18.2265184352766,0.496166021811951,0,0,0,0.544017803369474,1.2534494701135,0.919036730290385,0.983617892129413,0,0,0.488105059607853,4.13130071331449,0.573409195690071,7.98689171065336,2.48385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.42426995685538,0.194860308839388,0.531459361253452,0.981392365535065,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86264752779733,1.41696576325585,4.94864963077169,0.615349092722265,0.756215088665154,0.829887029570615,2.09918339321406,1.42769420259154,0,0,0,0,0,0,0,1.80504788038217,0,1.56302802246618,0,0,0,1.55336444622308,0,5.78723030203315,0.951237152908602,2.18789923607288,0,3.96968942711435,0,0,0.535701835878287,3.02655349996942,0,1.36597314810779,12.9505460437453,0.115233987555779,0,2.31097092121228,1.24968269769413,0,0,7.8493092850514,0.314231179832004,0,3.65263488203798,0,0,3.57382720883282,0,0,0,0,0,0,0,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0,1.84793052341245,5.799072156691,17.9713067431882,0,0,0,0,0,0,12.1935169810553,3.93407208907123,0,7.10930133086326,0,2.35570160537934,12.1789024134105,5.0718687310008,0,0.281951753939561,2.57831551894309,0,0,0,0,1.46067277649303,0.458729283404541,7.31031874072402,0,1.22384682343646,3.9271562130634,7.93540260773101,0,0,0,0,0,0,0,0,0,0,2.95536923051134,0.803892390468535,0.829169439458779,8.27463966895162,3.41174371041569,4.04709533488359,1.16260037704811,1.80016671457988,0,0.190941474834495,4.24446096812261,2.61260097476354,9.24029912930259,2.1552656964668,1.72133292942423,3.65926392200615,0,0,0,0,14.0784565442073,6.47879654169192,2.03448089157869,5.99181096766961,2.41528552309231,0 | |||
|short_description=p1@HPGDS | |||
}} |
Latest revision as of 10:08, 19 September 2015
Short description: | p1@HPGDS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HPGDS_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 9bp_to_ENST00000514774_5end |
EntrezGene: | HPGDS |
HGNC: | 17890 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.36e-09 | 5 |
basophil mast progenitor cell | 1.36e-09 | 5 |
macrophage | 3.74e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 9.20e-49 | 114 |
neural tube | 1.44e-16 | 56 |
neural rod | 1.44e-16 | 56 |
future spinal cord | 1.44e-16 | 56 |
neural keel | 1.44e-16 | 56 |
regional part of nervous system | 5.52e-14 | 53 |
regional part of brain | 5.52e-14 | 53 |
regional part of forebrain | 5.68e-12 | 41 |
forebrain | 5.68e-12 | 41 |
anterior neural tube | 5.68e-12 | 41 |
future forebrain | 5.68e-12 | 41 |
neural plate | 9.93e-12 | 82 |
presumptive neural plate | 9.93e-12 | 82 |
central nervous system | 1.12e-11 | 81 |
neurectoderm | 9.65e-11 | 86 |
nervous system | 2.74e-10 | 89 |
telencephalon | 3.27e-10 | 34 |
brain | 9.88e-10 | 68 |
future brain | 9.88e-10 | 68 |
brain grey matter | 3.44e-09 | 34 |
gray matter | 3.44e-09 | 34 |
regional part of telencephalon | 9.20e-09 | 32 |
cerebral hemisphere | 1.53e-08 | 32 |
organ system subdivision | 3.02e-08 | 223 |
regional part of cerebral cortex | 4.56e-08 | 22 |
ecto-epithelium | 4.61e-08 | 104 |
neocortex | 1.28e-07 | 20 |
structure with developmental contribution from neural crest | 1.38e-07 | 132 |
pre-chordal neural plate | 1.39e-07 | 61 |
cerebral cortex | 9.25e-07 | 25 |
pallium | 9.25e-07 | 25 |