FFCP PHASE1:Mm9::chr1:154613670..154613681,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=67771 | |EntrezGene=67771 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1914 | |||
|TSSclassifier=NA | |||
|UniProt=Q9CPW4,Q3UA72 | |UniProt=Q9CPW4,Q3UA72 | ||
|association_with_transcript=0bp_to_ENSMUST00000077755,ENSMUST00000097536,NM_026369,uc007czj.2_5end | |association_with_transcript=0bp_to_ENSMUST00000077755,ENSMUST00000097536,NM_026369,uc007czj.2_5end | ||
|cluster_id=chr1:154613670..154613681,+ | |||
|description=CAGE_peak_3_at_Arpc5_5end | |description=CAGE_peak_3_at_Arpc5_5end | ||
|id=chr1:154613670..154613681,+ | |id=chr1:154613670..154613681,+ | ||
|ontology_enrichment_celltype=CL:0000117!7.41e-08!23;CL:0000337!7.41e-08!23 | |ontology_enrichment_celltype=CL:0000117!7.41e-08!23;CL:0000337!7.41e-08!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.91e-08,23;CL:0000337,6.91e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.88e-13!34;UBERON:0001049!9.83e-13!52;UBERON:0005068!9.83e-13!52;UBERON:0006241!9.83e-13!52;UBERON:0007135!9.83e-13!52;UBERON:0000955!5.68e-11!50;UBERON:0006238!5.68e-11!50;UBERON:0003056!6.15e-11!49;UBERON:0002780!6.59e-11!39;UBERON:0001890!6.59e-11!39;UBERON:0006240!6.59e-11!39;UBERON:0002791!7.06e-11!29;UBERON:0003528!7.06e-11!29;UBERON:0001893!7.06e-11!29;UBERON:0003080!7.57e-11!40;UBERON:0000033!1.19e-10!63;UBERON:0002616!1.28e-10!49;UBERON:0001017!9.63e-10!73;UBERON:0005743!9.63e-10!73;UBERON:0000073!1.04e-09!75;UBERON:0001016!1.04e-09!75;UBERON:0002346!1.09e-09!71;UBERON:0003075!1.09e-09!71;UBERON:0007284!1.09e-09!71;UBERON:0000956!1.78e-07!21;UBERON:0001869!1.78e-07!21;UBERON:0000203!1.78e-07!21;UBERON:0004121!3.86e-07!102;UBERON:0000924!3.86e-07!102;UBERON:0006601!3.86e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.65e-13,34;UBERON:0000073,4.88e-13,54;UBERON:0001049,9.47e-13,52;UBERON:0005068,9.47e-13,52;UBERON:0006241,9.47e-13,52;UBERON:0007135,9.47e-13,52;UBERON:0002346,1.61e-12,64;UBERON:0003075,1.61e-12,64;UBERON:0007284,1.61e-12,64;UBERON:0010371,9.41e-12,73;UBERON:0000955,3.34e-11,47;UBERON:0006238,3.34e-11,47;UBERON:0003056,6.09e-11,49;UBERON:0003528,6.36e-11,29;UBERON:0002791,6.36e-11,29;UBERON:0001893,6.36e-11,29;UBERON:0002780,6.92e-11,39;UBERON:0001890,6.92e-11,39;UBERON:0006240,6.92e-11,39;UBERON:0002616,7.65e-11,46;UBERON:0003080,7.95e-11,40;UBERON:0001017,6.63e-10,73;UBERON:0001016,7.19e-10,75;UBERON:0004121,6.39e-09,95;UBERON:0000924,6.39e-09,95;UBERON:0006601,6.39e-09,95;UBERON:0010314,1.46e-08,92;UBERON:0000956,1.67e-07,21;UBERON:0001869,1.67e-07,21;UBERON:0000203,1.67e-07,21 | |||
|phase1_expression=2.88267924788629,8.72438519098403,3.18499467572675,1.81478526784098,0.500895729946347,1.34303417529512,1.16806320297763,0.903863264091034,0.84473233291,1.87251621057595,1.19852577757853,0.717949430958028,0.684802919724823,0.437102012094987,2.33176833270964,2.83465374345756,4.89693314689703,1.73504190947031,2.05671650408608,1.27316895539409,2.38121212422995,0.794327609607082,0.783599367416806,1.75991665072747,1.83527424853736,1.72269589234506,1.7230479846363,0.861884930743556,0.570070258369122,1.76421090831952,1.77384408524244,1.27006134691926,0.61506478758457,0,1.1554064790051,1.32987716286794,1.02084678131185,13.393012183581,7.0320181007142,7.32933241563318,12.3528612486513,16.3930916390027,16.9928623560904,0.503587271902309,1.31790010585369,1.46837401729345,3.12956537739216,0.65407546914134,1.5378032791413,2.52758868796568,1.39986421625363,2.87505128729943,1.51004345451963,0,0.672187598284928,1.80081605225163,2.0057340795713,1.54701627683233,6.87875966922632,2.64495489636016,2.53532561402472,3.38844532069132,0,0,0.988866362566974,0.7104801149461,1.49800055259202,1.53687322128622,2.59224030771194,2.8351247049655,2.10324961351382,3.71346279724945,5.52171352379034,2.9397791811589,2.58782771749238,2.75765635983006,1.10115880999389,2.80912143787413,2.15049146558741,3.95658863190582,4.48289453651807,6.25096044668112,2.79182999001381,2.25105044012672,2.75036845998258,3.53554302568401,2.98980529678116,5.03278503728312,1.59025005999687,2.26714680320357,1.15945795480671,2.58127163094416,2.03991400112325,2.15881276655127,1.29955283489534,3.13618820968135,0.842666520790511,1.70430322578058,2.07828803682295,1.41335829804136,4.50698943285378,1.28326477414318,0,7.11066703153331,1.08245520505607,1.77351905832569,1.01104889002957,1.59857431606684,1.29468941823586,1.48442139064825,1.90833859442749,0.304465478312141,1.15307748628029,1.20578112442098,1.52865319276416,1.13099932196708,2.22475470960936,0.86759614151947,0,1.45590164952668,3.5334642953663,0.969750506270444,1.86391761218122,1.75668478206928,1.67557365450764,1.27728527604296,1.55759661857696,1.19980546198682,2.03312363316904,1.9472783122627,3.66000482254901,8.79580464790051,6.77914848749878,5.11430914660661,3.32460871295296,4.86723789203273,3.86989582631202,3.11017426525233,3.0326731012041,0.841767423545896,1.56144531555244,2.98872735763515,2.52086981727489,2.71268672104287,4.28629944653366,3.84341160854549,2.52994656311268,0.517406741478031,1.29340795759705,0.567318240503458,2.63926686245923,2.19195732427575,0.834141747676794,2.089512999133,0.61734640922383,1.39323986772945,2.1066395619397,1.54408744268829,1.42081749697796,1.65700618028402,1.87620847984877,1.44049649168812,1.89395788468168,1.96764231747404,2.00547246753592,2.32533944750408,1.3413670069981,3.03589890154641,1.81015834904829,0.985004784474571,1.70244500046297,1.75439984910399,1.97595103761946,0.805238512562231,9.46304768538573,7.9236551532049,1.65209391491899,1.85115396664481,0.639864751605702,2.09013004674395,1.80414445850931,2.21851877085677,1.77902435075896,1.71203063501303,2.37264530772256,2.14108641141214,2.26201687920243,1.59165177632921,1.9496408711912,0.898819408654221,1.51296634912286,1.39398891278057,2.65535061334314,2.85621281524322,0,1.01825663922657,1.93952487167626,3.57692681440625,3.60448261608267,2.65698266363284,2.82597710114475,1.72756029490521,1.77871576252289,1.66845105716094,0.589676985339609,0.449724224769707,2.02860121388503,1.4470629585145,0.763877555344259,0.863088412352432,2.2698931748505,1.92192989231657,1.43768206527355,1.86070473834252,1.87222603868736,1.76805214562978,0.896987067609561,2.8946611281802,0.923765950833023,1.89491411770485,1.79261474086228,0.678980343100753,0.938760993154008,2.1775813467436,1.19021820443007,1.36593553500459,1.7339865851681,2.43611158613652,1.75400245523236,0.81931657357869,0.690739927463582,0.867894351489069,6.03165135757089,0.54390568381871,0.983528546038072,0.827810238914197,3.37156238974363,3.6335622843583,2.29508923527346,1.00988370881749,2.2085575359138,2.34263246577983,0.430846795465598,0.716906393857656,1.11399337041197,1.13230612315533,1.21443210502468,0.292255857911312,1.18586333383957,2.89189184779626,1.56134093729095,1.42452482933804,2.76907830901079,1.15479086080775,2.65490276679926,1.94224508923985,1.81394134178851,2.64047111658257,2.65771703592696,1.22974059177571,3.10113951801865,2.18120237686503,1.42598951353889,1.8962205476149,3.16255825724996,1.03135543248187,2.38307724027652,1.62054984628179,1.03486947026204,0.857348140126369,2.48276327099183,2.67553226403106,2.46823530903181,2.74018454203139,1.17335854031855,0.63549621259146,1.10264199027481,2.63818004706368,2.42196640043858,1.38719727334758,1.79058516004705,1.64140899745061,1.45740418314925,1.29797711407357,0.512612642393558,1.44470807574256,1.29636169158798,2.44878994106098,1.50363650493128,1.60144721244566,1.86976272993241,2.23922323717853,2.21119958087078,0.954670618015114,2.53068794864908,1.82987520414164,1.40406943068342,1.67270636811575,1.31017538247707,1.21377911746339,1.98368293740806,0.523511883968059,2.07383957266869,0.621339313086926,2.25477175473676,1.49516546043979,2.31641886639937,1.94451188344048,1.54991788173277,2.19642963138012,3.28600268208111,3.25510962109875,3.35549902162275,2.65742532908607,2.01621004380506,2.8441000856536,1.62180172232131,2.67048488628551,1.55904987573354,1.79026695667481,1.98681354781265,0.961563596159751,1.32920574457119,1.9183625490148,1.905170166375,1.31074040677893,0.779663045918019,1.25075394132428,1.5193997283604,0.680191150845634,1.33191572024439,1.70456327558004,2.01461539636894,0.772758376128762,1.87682475451182,0.73260649706906,0.857473516316263,1.00314420807073,9.60078132449013,5.06357760157895,4.01026859407578,3.43706364687375,3.42541259885321,3.0215755895588,2.70009000092722,4.05289082901798,3.17199686288943,1.03552062350364,1.03787347584177,2.39414924040619,1.36586884603307,1.45864030240976,2.30574478890781,3.30918315210025,2.66696073361938,1.85431551515005,2.24643446714271,1.01078884705519,2.78827229879264,1.69763707247469,1.591905626988,1.40855335290712,1.32101578597911,2.38146845641537,2.43357084484197,2.70072908649187,2.06042950401653,1.47198920134397,1.02860775715625,1.59728225543404,2.38436189947321,1.45346416632329,1.59985946706062,1.77690676572521,1.28049581010941,2.10455769150274,1.08643291076689,1.12228454331548,1.42362021749009,1.28055827088233,2.45538625901814,1.70430525304563,2.12197272079256,1.99848462350357,1.40358965067245,2.14871054048298,3.25190164517034,1.54413993383661,0.927471342481686 | |phase1_expression=2.88267924788629,8.72438519098403,3.18499467572675,1.81478526784098,0.500895729946347,1.34303417529512,1.16806320297763,0.903863264091034,0.84473233291,1.87251621057595,1.19852577757853,0.717949430958028,0.684802919724823,0.437102012094987,2.33176833270964,2.83465374345756,4.89693314689703,1.73504190947031,2.05671650408608,1.27316895539409,2.38121212422995,0.794327609607082,0.783599367416806,1.75991665072747,1.83527424853736,1.72269589234506,1.7230479846363,0.861884930743556,0.570070258369122,1.76421090831952,1.77384408524244,1.27006134691926,0.61506478758457,0,1.1554064790051,1.32987716286794,1.02084678131185,13.393012183581,7.0320181007142,7.32933241563318,12.3528612486513,16.3930916390027,16.9928623560904,0.503587271902309,1.31790010585369,1.46837401729345,3.12956537739216,0.65407546914134,1.5378032791413,2.52758868796568,1.39986421625363,2.87505128729943,1.51004345451963,0,0.672187598284928,1.80081605225163,2.0057340795713,1.54701627683233,6.87875966922632,2.64495489636016,2.53532561402472,3.38844532069132,0,0,0.988866362566974,0.7104801149461,1.49800055259202,1.53687322128622,2.59224030771194,2.8351247049655,2.10324961351382,3.71346279724945,5.52171352379034,2.9397791811589,2.58782771749238,2.75765635983006,1.10115880999389,2.80912143787413,2.15049146558741,3.95658863190582,4.48289453651807,6.25096044668112,2.79182999001381,2.25105044012672,2.75036845998258,3.53554302568401,2.98980529678116,5.03278503728312,1.59025005999687,2.26714680320357,1.15945795480671,2.58127163094416,2.03991400112325,2.15881276655127,1.29955283489534,3.13618820968135,0.842666520790511,1.70430322578058,2.07828803682295,1.41335829804136,4.50698943285378,1.28326477414318,0,7.11066703153331,1.08245520505607,1.77351905832569,1.01104889002957,1.59857431606684,1.29468941823586,1.48442139064825,1.90833859442749,0.304465478312141,1.15307748628029,1.20578112442098,1.52865319276416,1.13099932196708,2.22475470960936,0.86759614151947,0,1.45590164952668,3.5334642953663,0.969750506270444,1.86391761218122,1.75668478206928,1.67557365450764,1.27728527604296,1.55759661857696,1.19980546198682,2.03312363316904,1.9472783122627,3.66000482254901,8.79580464790051,6.77914848749878,5.11430914660661,3.32460871295296,4.86723789203273,3.86989582631202,3.11017426525233,3.0326731012041,0.841767423545896,1.56144531555244,2.98872735763515,2.52086981727489,2.71268672104287,4.28629944653366,3.84341160854549,2.52994656311268,0.517406741478031,1.29340795759705,0.567318240503458,2.63926686245923,2.19195732427575,0.834141747676794,2.089512999133,0.61734640922383,1.39323986772945,2.1066395619397,1.54408744268829,1.42081749697796,1.65700618028402,1.87620847984877,1.44049649168812,1.89395788468168,1.96764231747404,2.00547246753592,2.32533944750408,1.3413670069981,3.03589890154641,1.81015834904829,0.985004784474571,1.70244500046297,1.75439984910399,1.97595103761946,0.805238512562231,9.46304768538573,7.9236551532049,1.65209391491899,1.85115396664481,0.639864751605702,2.09013004674395,1.80414445850931,2.21851877085677,1.77902435075896,1.71203063501303,2.37264530772256,2.14108641141214,2.26201687920243,1.59165177632921,1.9496408711912,0.898819408654221,1.51296634912286,1.39398891278057,2.65535061334314,2.85621281524322,0,1.01825663922657,1.93952487167626,3.57692681440625,3.60448261608267,2.65698266363284,2.82597710114475,1.72756029490521,1.77871576252289,1.66845105716094,0.589676985339609,0.449724224769707,2.02860121388503,1.4470629585145,0.763877555344259,0.863088412352432,2.2698931748505,1.92192989231657,1.43768206527355,1.86070473834252,1.87222603868736,1.76805214562978,0.896987067609561,2.8946611281802,0.923765950833023,1.89491411770485,1.79261474086228,0.678980343100753,0.938760993154008,2.1775813467436,1.19021820443007,1.36593553500459,1.7339865851681,2.43611158613652,1.75400245523236,0.81931657357869,0.690739927463582,0.867894351489069,6.03165135757089,0.54390568381871,0.983528546038072,0.827810238914197,3.37156238974363,3.6335622843583,2.29508923527346,1.00988370881749,2.2085575359138,2.34263246577983,0.430846795465598,0.716906393857656,1.11399337041197,1.13230612315533,1.21443210502468,0.292255857911312,1.18586333383957,2.89189184779626,1.56134093729095,1.42452482933804,2.76907830901079,1.15479086080775,2.65490276679926,1.94224508923985,1.81394134178851,2.64047111658257,2.65771703592696,1.22974059177571,3.10113951801865,2.18120237686503,1.42598951353889,1.8962205476149,3.16255825724996,1.03135543248187,2.38307724027652,1.62054984628179,1.03486947026204,0.857348140126369,2.48276327099183,2.67553226403106,2.46823530903181,2.74018454203139,1.17335854031855,0.63549621259146,1.10264199027481,2.63818004706368,2.42196640043858,1.38719727334758,1.79058516004705,1.64140899745061,1.45740418314925,1.29797711407357,0.512612642393558,1.44470807574256,1.29636169158798,2.44878994106098,1.50363650493128,1.60144721244566,1.86976272993241,2.23922323717853,2.21119958087078,0.954670618015114,2.53068794864908,1.82987520414164,1.40406943068342,1.67270636811575,1.31017538247707,1.21377911746339,1.98368293740806,0.523511883968059,2.07383957266869,0.621339313086926,2.25477175473676,1.49516546043979,2.31641886639937,1.94451188344048,1.54991788173277,2.19642963138012,3.28600268208111,3.25510962109875,3.35549902162275,2.65742532908607,2.01621004380506,2.8441000856536,1.62180172232131,2.67048488628551,1.55904987573354,1.79026695667481,1.98681354781265,0.961563596159751,1.32920574457119,1.9183625490148,1.905170166375,1.31074040677893,0.779663045918019,1.25075394132428,1.5193997283604,0.680191150845634,1.33191572024439,1.70456327558004,2.01461539636894,0.772758376128762,1.87682475451182,0.73260649706906,0.857473516316263,1.00314420807073,9.60078132449013,5.06357760157895,4.01026859407578,3.43706364687375,3.42541259885321,3.0215755895588,2.70009000092722,4.05289082901798,3.17199686288943,1.03552062350364,1.03787347584177,2.39414924040619,1.36586884603307,1.45864030240976,2.30574478890781,3.30918315210025,2.66696073361938,1.85431551515005,2.24643446714271,1.01078884705519,2.78827229879264,1.69763707247469,1.591905626988,1.40855335290712,1.32101578597911,2.38146845641537,2.43357084484197,2.70072908649187,2.06042950401653,1.47198920134397,1.02860775715625,1.59728225543404,2.38436189947321,1.45346416632329,1.59985946706062,1.77690676572521,1.28049581010941,2.10455769150274,1.08643291076689,1.12228454331548,1.42362021749009,1.28055827088233,2.45538625901814,1.70430525304563,2.12197272079256,1.99848462350357,1.40358965067245,2.14871054048298,3.25190164517034,1.54413993383661,0.927471342481686 | ||
|short_description=p3@Arpc5 | |short_description=p3@Arpc5 | ||
}} | }} |
Latest revision as of 13:40, 26 September 2015
Short description: | p3@Arpc5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Arpc5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1914 |
Association with transcript: | 0bp_to_ENSMUST00000077755, ENSMUST00000097536, NM_026369, uc007czj.2_5end |
EntrezGene: | Arpc5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.91e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.91e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.65e-13 | 34 |
regional part of nervous system | 4.88e-13 | 54 |
neural tube | 9.47e-13 | 52 |
neural rod | 9.47e-13 | 52 |
future spinal cord | 9.47e-13 | 52 |
neural keel | 9.47e-13 | 52 |
neurectoderm | 1.61e-12 | 64 |
neural plate | 1.61e-12 | 64 |
presumptive neural plate | 1.61e-12 | 64 |
ecto-epithelium | 9.41e-12 | 73 |
brain | 3.34e-11 | 47 |
future brain | 3.34e-11 | 47 |
pre-chordal neural plate | 6.09e-11 | 49 |
brain grey matter | 6.36e-11 | 29 |
regional part of telencephalon | 6.36e-11 | 29 |
telencephalon | 6.36e-11 | 29 |
regional part of forebrain | 6.92e-11 | 39 |
forebrain | 6.92e-11 | 39 |
future forebrain | 6.92e-11 | 39 |
regional part of brain | 7.65e-11 | 46 |
anterior neural tube | 7.95e-11 | 40 |
central nervous system | 6.63e-10 | 73 |
nervous system | 7.19e-10 | 75 |
ectoderm-derived structure | 6.39e-09 | 95 |
ectoderm | 6.39e-09 | 95 |
presumptive ectoderm | 6.39e-09 | 95 |
structure with developmental contribution from neural crest | 1.46e-08 | 92 |
cerebral cortex | 1.67e-07 | 21 |
cerebral hemisphere | 1.67e-07 | 21 |
pallium | 1.67e-07 | 21 |