FFCP PHASE1:Mm9::chr11:107655973..107656043,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54377 | |EntrezGene=54377 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JJV4 | |UniProt=Q9JJV4 | ||
|association_with_transcript=-102bp_to_ENSMUST00000021066_5end | |association_with_transcript=-102bp_to_ENSMUST00000021066_5end | ||
|cluster_id=chr11:107655973..107656043,- | |||
|description=CAGE_peak_1_at_Cacng4_5end | |description=CAGE_peak_1_at_Cacng4_5end | ||
|id=chr11:107655973..107656043,- | |id=chr11:107655973..107656043,- | ||
|ontology_enrichment_celltype=CL:0000540!2.39e-18!33;CL:0000047!2.39e-18!33;CL:0000031!2.39e-18!33;CL:0000404!2.39e-18!33;CL:0002319!1.15e-16!43;CL:0000221!1.85e-16!44;CL:0000133!1.85e-16!44;CL:0000117!2.36e-15!23;CL:0000337!2.36e-15!23;CL:0000393!7.24e-12!39;CL:0000211!7.24e-12!39;CL:0000055!1.09e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.14e-20,33;CL:0000047,6.14e-20,33;CL:0000031,6.14e-20,33;CL:0000404,6.14e-20,33;CL:0002319,1.10e-16,43;CL:0000117,1.17e-16,23;CL:0000337,1.17e-16,23;CL:0000221,1.76e-16,44;CL:0000133,1.76e-16,44;CL:0000393,5.09e-14,39;CL:0000211,5.09e-14,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.81e-31!73;UBERON:0005743!4.81e-31!73;UBERON:0000073!5.99e-30!75;UBERON:0001016!5.99e-30!75;UBERON:0004121!7.21e-30!102;UBERON:0000924!7.21e-30!102;UBERON:0006601!7.21e-30!102;UBERON:0002346!1.02e-27!71;UBERON:0003075!1.02e-27!71;UBERON:0007284!1.02e-27!71;UBERON:0000033!6.17e-22!63;UBERON:0001049!2.63e-21!52;UBERON:0005068!2.63e-21!52;UBERON:0006241!2.63e-21!52;UBERON:0007135!2.63e-21!52;UBERON:0003056!1.27e-20!49;UBERON:0000955!1.91e-19!50;UBERON:0006238!1.91e-19!50;UBERON:0002616!4.98e-19!49;UBERON:0003080!4.59e-16!40;UBERON:0002780!1.36e-15!39;UBERON:0001890!1.36e-15!39;UBERON:0006240!1.36e-15!39;UBERON:0000153!1.67e-15!94;UBERON:0002020!2.03e-15!34;UBERON:0007811!1.69e-14!86;UBERON:0002791!4.05e-12!29;UBERON:0003528!4.05e-12!29;UBERON:0001893!4.05e-12!29;UBERON:0000468!8.08e-10!333;UBERON:0000922!9.20e-08!328;UBERON:0000956!1.10e-07!21;UBERON:0001869!1.10e-07!21;UBERON:0000203!1.10e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.44e-33,73;UBERON:0001016,4.26e-31,75;UBERON:0004121,1.91e-30,95;UBERON:0000924,1.91e-30,95;UBERON:0006601,1.91e-30,95;UBERON:0002346,1.56e-29,64;UBERON:0003075,1.56e-29,64;UBERON:0007284,1.56e-29,64;UBERON:0010371,2.89e-25,73;UBERON:0000073,1.01e-23,54;UBERON:0001049,2.24e-22,52;UBERON:0005068,2.24e-22,52;UBERON:0006241,2.24e-22,52;UBERON:0007135,2.24e-22,52;UBERON:0003056,1.28e-21,49;UBERON:0000955,1.40e-18,47;UBERON:0006238,1.40e-18,47;UBERON:0002616,3.90e-18,46;UBERON:0010314,2.96e-17,92;UBERON:0003080,1.15e-16,40;UBERON:0002780,3.71e-16,39;UBERON:0001890,3.71e-16,39;UBERON:0006240,3.71e-16,39;UBERON:0002020,6.39e-16,34;UBERON:0003528,2.33e-12,29;UBERON:0002791,2.33e-12,29;UBERON:0001893,2.33e-12,29;UBERON:0000956,1.36e-07,21;UBERON:0001869,1.36e-07,21;UBERON:0000203,1.36e-07,21;UBERON:0000922,3.48e-07,320 | |||
|phase1_expression=4.16387002472464,0,0,0,0,0,0,0.258246646883153,0.281577444303333,1.40438715793196,0.171217968225505,0.159544317990673,0,0,0,0.202475267389826,0,0,0.137114433605739,0,2.97651515528744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.25913075478431,1.52617609466313,0.439372365468944,0.777719596297134,1.67983705950435,2.87505128729943,0,0,0,0,0,0,91.6493567693978,86.2255296213414,84.933408069828,0,0,0,0,0,53.328819672276,68.3908583472367,51.222668480388,47.7921021694185,43.9579169224388,56.8445458963569,53.0084498283872,48.9963196859816,40.9260161247869,40.4456266108409,25.3266526298594,22.7283461791634,21.8121277223866,72.6693445393368,71.0858990790723,59.9050376140274,18.7052609330925,20.2594539611405,17.4190002465564,73.6571463684169,50.5419466836815,85.557345633813,0.454357159999104,0.453429360640713,0,0,0,0.539703191637817,0,0,0.983110940922263,0,0,0,1.69012103732017,0,0,0,0,0,0,0.34255163915718,0.776813650941515,1.33597925158342,9.36820764537134,6.39377504455497,5.76538743140146,3.3158980921577,6.82014501387088,0.502666365318702,0,0,0,0.647067399789637,0.441683036920787,0.484875253135222,0,11.1256702864388,11.3101221679266,0.255457055208591,0.11981512450592,0,0,18.4242486467932,38.4300506367646,61.4449781831907,7.82209440865244,16.6215047264715,26.5968697036237,26.76980840618,4.78645010096487,0.248813941220186,0.758168275301024,5.26104639716185,20.1686686592191,24.1397209655147,32.7713076245736,22.3043130396858,29.051585137617,28.953700784376,30.7341656555911,18.6266426932091,3.44908788692548,5.8622884852024,8.62160508403349,5.2606975782618,10.2877482213471,4.52727816478817,5.96768195583036,7.96137067273973,0,0,0,0.207125772535502,1.40715635988658,1.80062061461015,0.710234206755631,0.787056926989615,0.462801338662135,0.930135779001631,0.536546802799238,0.233530684734339,1.15191894939436,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,11.7762371195911,55.1568722352965,0,0,6.82522401712749,11.3795969211615,10.4382643670896,6.25218926332362,3.55804870151792,2.85338439168839,0,1.81168850196412,1.50801125280162,0.994782360205754,1.55971269695296,0,0,0,4.93136542478012,5.48392860526698,6.76246414038483,2.64746726198909,2.90928730751439,1.61312385747733,1.01178459398812,0.590440591918409,0.156998727841375,0.370191491765402,0,1.50160595144485,1.17935397067922,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0.744281895337007,0.312037673114561,0,0,0,0,5.49525094134406,3.58522948172457,3.22515662972857,1.87752198630802,1.67506257441816,0.238043640886014,0.390267295715598,0.472905432318573,0.44292937929755,0.637819074629948,0.327726629431476,0,0.144649058581512,0,0,0,0.275936746304732,12.6834966090356,18.0505997351993,0,0.252470927204373,17.6684602873104,19.5219372148319,26.2816545234015,3.10659437338318,9.13474563737816,10.190755108398,17.4068601720205,24.5494920645502,28.8560077900962,13.4954952897159,0.99358059645788,4.62970569534864,2.60619134965722,2.47455184458803,0,1.21390318077491,2.11626489875326,0.565815239267694,0.885905678642318,3.07435147943927,1.55056975900933,1.81766864738753,0,0.632073515871632,0,0,2.38307724027652,15.8453762747553,17.3340636268891,16.289614662401,12.4138163549592,12.4858172321449,10.86023535974,10.656273219011,1.17335854031855,0,0.441056796109924,0.8244312647074,0.484393280087717,1.93001359770099,1.55184047204077,1.96969079694074,0.291480836629851,16.5028518789354,0,1.857481811669,0.185194527369712,0.188368457004691,0.136694227721025,0,0.169978429993855,0,0,0.954670618015114,11.2299277721303,4.67634774391752,5.94029374519907,2.29997125615916,2.18362563746178,2.42755823492677,1.1571483801547,0.26175594198403,0.259229946583586,0,0.56369293868419,3.88743019714345,4.46737924234164,4.4723773319131,4.39143399824286,3.8859908862879,1.87771581833206,3.25510962109875,1.57289016638566,0.483168241652012,0.288030006257865,2.21207784439725,5.87903124341476,3.90301637226344,1.29920822977795,1.07416017400489,0.79472541912506,1.20195449519969,0.886137163047463,0.908698049533329,1.295515713135,1.61321896218945,1.07203668813728,0.865906574762965,1.5193997283604,0,0.665957860122194,1.70456327558004,0.167884616364078,0.386379188064381,0.187682475451182,0.183151624267265,0,0,19.7663144915973,19.3336599333014,23.4887160510153,13.0608418581203,15.0718154349541,7.55393897389701,12.1504050041725,8.55610286126019,6.34399372577886,5.69536342927002,12.4544817101012,23.5424675306608,14.3416228833473,11.4260157022098,11.1094976192831,15.2590112013512,8.88986911206461,7.62329711783909,10.2694147069381,11.1186773176071,9.37873409593887,7.35642731405697,9.64507526939789,12.1647789569252,10.395819880966,15.2413981210584,12.5155072020444,11.3816440073586,5.76920261124629,7.80154276712306,7.88599280486455,7.98641127717019,8.82213902805088,9.44751708110135,9.03450051987174,11.1691282417013,10.7927503994936,8.15516105457313,7.06181391998481,12.906272248128,11.5075967580449,9.85044823755635,4.91077251803627,7.7468420592983,8.48789088317022,24.7312472158566,4.44470056046276,6.23126056740065,2.10417165275728,1.98532277207564,0.695603506861264 | |phase1_expression=4.16387002472464,0,0,0,0,0,0,0.258246646883153,0.281577444303333,1.40438715793196,0.171217968225505,0.159544317990673,0,0,0,0.202475267389826,0,0,0.137114433605739,0,2.97651515528744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.25913075478431,1.52617609466313,0.439372365468944,0.777719596297134,1.67983705950435,2.87505128729943,0,0,0,0,0,0,91.6493567693978,86.2255296213414,84.933408069828,0,0,0,0,0,53.328819672276,68.3908583472367,51.222668480388,47.7921021694185,43.9579169224388,56.8445458963569,53.0084498283872,48.9963196859816,40.9260161247869,40.4456266108409,25.3266526298594,22.7283461791634,21.8121277223866,72.6693445393368,71.0858990790723,59.9050376140274,18.7052609330925,20.2594539611405,17.4190002465564,73.6571463684169,50.5419466836815,85.557345633813,0.454357159999104,0.453429360640713,0,0,0,0.539703191637817,0,0,0.983110940922263,0,0,0,1.69012103732017,0,0,0,0,0,0,0.34255163915718,0.776813650941515,1.33597925158342,9.36820764537134,6.39377504455497,5.76538743140146,3.3158980921577,6.82014501387088,0.502666365318702,0,0,0,0.647067399789637,0.441683036920787,0.484875253135222,0,11.1256702864388,11.3101221679266,0.255457055208591,0.11981512450592,0,0,18.4242486467932,38.4300506367646,61.4449781831907,7.82209440865244,16.6215047264715,26.5968697036237,26.76980840618,4.78645010096487,0.248813941220186,0.758168275301024,5.26104639716185,20.1686686592191,24.1397209655147,32.7713076245736,22.3043130396858,29.051585137617,28.953700784376,30.7341656555911,18.6266426932091,3.44908788692548,5.8622884852024,8.62160508403349,5.2606975782618,10.2877482213471,4.52727816478817,5.96768195583036,7.96137067273973,0,0,0,0.207125772535502,1.40715635988658,1.80062061461015,0.710234206755631,0.787056926989615,0.462801338662135,0.930135779001631,0.536546802799238,0.233530684734339,1.15191894939436,0.164167464079095,0.0810688095458557,0,0,0.134206418760372,11.7762371195911,55.1568722352965,0,0,6.82522401712749,11.3795969211615,10.4382643670896,6.25218926332362,3.55804870151792,2.85338439168839,0,1.81168850196412,1.50801125280162,0.994782360205754,1.55971269695296,0,0,0,4.93136542478012,5.48392860526698,6.76246414038483,2.64746726198909,2.90928730751439,1.61312385747733,1.01178459398812,0.590440591918409,0.156998727841375,0.370191491765402,0,1.50160595144485,1.17935397067922,0.224862112384854,0,0.241177159752417,0,0,0,0,0,0.744281895337007,0.312037673114561,0,0,0,0,5.49525094134406,3.58522948172457,3.22515662972857,1.87752198630802,1.67506257441816,0.238043640886014,0.390267295715598,0.472905432318573,0.44292937929755,0.637819074629948,0.327726629431476,0,0.144649058581512,0,0,0,0.275936746304732,12.6834966090356,18.0505997351993,0,0.252470927204373,17.6684602873104,19.5219372148319,26.2816545234015,3.10659437338318,9.13474563737816,10.190755108398,17.4068601720205,24.5494920645502,28.8560077900962,13.4954952897159,0.99358059645788,4.62970569534864,2.60619134965722,2.47455184458803,0,1.21390318077491,2.11626489875326,0.565815239267694,0.885905678642318,3.07435147943927,1.55056975900933,1.81766864738753,0,0.632073515871632,0,0,2.38307724027652,15.8453762747553,17.3340636268891,16.289614662401,12.4138163549592,12.4858172321449,10.86023535974,10.656273219011,1.17335854031855,0,0.441056796109924,0.8244312647074,0.484393280087717,1.93001359770099,1.55184047204077,1.96969079694074,0.291480836629851,16.5028518789354,0,1.857481811669,0.185194527369712,0.188368457004691,0.136694227721025,0,0.169978429993855,0,0,0.954670618015114,11.2299277721303,4.67634774391752,5.94029374519907,2.29997125615916,2.18362563746178,2.42755823492677,1.1571483801547,0.26175594198403,0.259229946583586,0,0.56369293868419,3.88743019714345,4.46737924234164,4.4723773319131,4.39143399824286,3.8859908862879,1.87771581833206,3.25510962109875,1.57289016638566,0.483168241652012,0.288030006257865,2.21207784439725,5.87903124341476,3.90301637226344,1.29920822977795,1.07416017400489,0.79472541912506,1.20195449519969,0.886137163047463,0.908698049533329,1.295515713135,1.61321896218945,1.07203668813728,0.865906574762965,1.5193997283604,0,0.665957860122194,1.70456327558004,0.167884616364078,0.386379188064381,0.187682475451182,0.183151624267265,0,0,19.7663144915973,19.3336599333014,23.4887160510153,13.0608418581203,15.0718154349541,7.55393897389701,12.1504050041725,8.55610286126019,6.34399372577886,5.69536342927002,12.4544817101012,23.5424675306608,14.3416228833473,11.4260157022098,11.1094976192831,15.2590112013512,8.88986911206461,7.62329711783909,10.2694147069381,11.1186773176071,9.37873409593887,7.35642731405697,9.64507526939789,12.1647789569252,10.395819880966,15.2413981210584,12.5155072020444,11.3816440073586,5.76920261124629,7.80154276712306,7.88599280486455,7.98641127717019,8.82213902805088,9.44751708110135,9.03450051987174,11.1691282417013,10.7927503994936,8.15516105457313,7.06181391998481,12.906272248128,11.5075967580449,9.85044823755635,4.91077251803627,7.7468420592983,8.48789088317022,24.7312472158566,4.44470056046276,6.23126056740065,2.10417165275728,1.98532277207564,0.695603506861264 | ||
|short_description=p1@Cacng4 | |short_description=p1@Cacng4 | ||
}} | }} |
Latest revision as of 21:09, 26 September 2015
Short description: | p1@Cacng4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cacng4_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -102bp_to_ENSMUST00000021066_5end |
EntrezGene: | Cacng4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.14e-20 | 33 |
neuronal stem cell | 6.14e-20 | 33 |
neuroblast | 6.14e-20 | 33 |
electrically signaling cell | 6.14e-20 | 33 |
neural cell | 1.10e-16 | 43 |
CNS neuron (sensu Vertebrata) | 1.17e-16 | 23 |
neuroblast (sensu Vertebrata) | 1.17e-16 | 23 |
ectodermal cell | 1.76e-16 | 44 |
neurectodermal cell | 1.76e-16 | 44 |
electrically responsive cell | 5.09e-14 | 39 |
electrically active cell | 5.09e-14 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.44e-33 | 73 |
nervous system | 4.26e-31 | 75 |
ectoderm-derived structure | 1.91e-30 | 95 |
ectoderm | 1.91e-30 | 95 |
presumptive ectoderm | 1.91e-30 | 95 |
neurectoderm | 1.56e-29 | 64 |
neural plate | 1.56e-29 | 64 |
presumptive neural plate | 1.56e-29 | 64 |
ecto-epithelium | 2.89e-25 | 73 |
regional part of nervous system | 1.01e-23 | 54 |
neural tube | 2.24e-22 | 52 |
neural rod | 2.24e-22 | 52 |
future spinal cord | 2.24e-22 | 52 |
neural keel | 2.24e-22 | 52 |
pre-chordal neural plate | 1.28e-21 | 49 |
brain | 1.40e-18 | 47 |
future brain | 1.40e-18 | 47 |
regional part of brain | 3.90e-18 | 46 |
structure with developmental contribution from neural crest | 2.96e-17 | 92 |
anterior neural tube | 1.15e-16 | 40 |
regional part of forebrain | 3.71e-16 | 39 |
forebrain | 3.71e-16 | 39 |
future forebrain | 3.71e-16 | 39 |
gray matter | 6.39e-16 | 34 |
brain grey matter | 2.33e-12 | 29 |
regional part of telencephalon | 2.33e-12 | 29 |
telencephalon | 2.33e-12 | 29 |
cerebral cortex | 1.36e-07 | 21 |
cerebral hemisphere | 1.36e-07 | 21 |
pallium | 1.36e-07 | 21 |
embryo | 3.48e-07 | 320 |