FFCP PHASE1:Mm9::chr6:149137170..149137247,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=232566 | |EntrezGene=232566 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |MCL_coexpression_id=0 | ||
|TSSclassifier=NA | |||
|UniProt=B8JKU8,B8JKV0,B8JKU9 | |UniProt=B8JKU8,B8JKV0,B8JKU9 | ||
|association_with_transcript=0bp_to_ENSMUST00000095319,ENSMUST00000111535,ENSMUST00000141346,ENSMUST00000149149,ENSMUST00000150610,ENSMUST00000152062,NM_001113424,uc009eua.1,uc012evy.1,uc012evz.1_5end | |association_with_transcript=0bp_to_ENSMUST00000095319,ENSMUST00000111535,ENSMUST00000141346,ENSMUST00000149149,ENSMUST00000150610,ENSMUST00000152062,NM_001113424,uc009eua.1,uc012evy.1,uc012evz.1_5end | ||
|cluster_id=chr6:149137170..149137247,- | |||
|description=CAGE_peak_1_at_Amn1_5end | |description=CAGE_peak_1_at_Amn1_5end | ||
|id=chr6:149137170..149137247,- | |id=chr6:149137170..149137247,- | ||
|ontology_enrichment_celltype=CL:0000117!4.27e-09!23;CL:0000337!4.27e-09!23;CL:0000540!1.62e-07!33;CL:0000047!1.62e-07!33;CL:0000031!1.62e-07!33;CL:0000404!1.62e-07!33 | |ontology_enrichment_celltype=CL:0000117!4.27e-09!23;CL:0000337!4.27e-09!23;CL:0000540!1.62e-07!33;CL:0000047!1.62e-07!33;CL:0000031!1.62e-07!33;CL:0000404!1.62e-07!33 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.27e-09,23;CL:0000337,4.27e-09,23;CL:0000540,1.62e-07,33;CL:0000047,1.62e-07,33;CL:0000031,1.62e-07,33;CL:0000404,1.62e-07,33 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.67e-14!63;UBERON:0003056!6.79e-14!49;UBERON:0002346!3.89e-13!71;UBERON:0003075!3.89e-13!71;UBERON:0007284!3.89e-13!71;UBERON:0004121!3.64e-12!102;UBERON:0000924!3.64e-12!102;UBERON:0006601!3.64e-12!102;UBERON:0001049!5.91e-12!52;UBERON:0005068!5.91e-12!52;UBERON:0006241!5.91e-12!52;UBERON:0007135!5.91e-12!52;UBERON:0002020!3.91e-11!34;UBERON:0000073!5.01e-11!75;UBERON:0001016!5.01e-11!75;UBERON:0000955!8.76e-11!50;UBERON:0006238!8.76e-11!50;UBERON:0001017!1.09e-10!73;UBERON:0005743!1.09e-10!73;UBERON:0003080!2.16e-10!40;UBERON:0002616!2.79e-10!49;UBERON:0002780!3.72e-10!39;UBERON:0001890!3.72e-10!39;UBERON:0006240!3.72e-10!39;UBERON:0002791!2.31e-09!29;UBERON:0003528!2.31e-09!29;UBERON:0001893!2.31e-09!29;UBERON:0007811!6.27e-08!86;UBERON:0000153!8.92e-08!94;UBERON:0000956!4.61e-07!21;UBERON:0001869!4.61e-07!21;UBERON:0000203!4.61e-07!21 | |ontology_enrichment_uberon=UBERON:0000033!1.67e-14!63;UBERON:0003056!6.79e-14!49;UBERON:0002346!3.89e-13!71;UBERON:0003075!3.89e-13!71;UBERON:0007284!3.89e-13!71;UBERON:0004121!3.64e-12!102;UBERON:0000924!3.64e-12!102;UBERON:0006601!3.64e-12!102;UBERON:0001049!5.91e-12!52;UBERON:0005068!5.91e-12!52;UBERON:0006241!5.91e-12!52;UBERON:0007135!5.91e-12!52;UBERON:0002020!3.91e-11!34;UBERON:0000073!5.01e-11!75;UBERON:0001016!5.01e-11!75;UBERON:0000955!8.76e-11!50;UBERON:0006238!8.76e-11!50;UBERON:0001017!1.09e-10!73;UBERON:0005743!1.09e-10!73;UBERON:0003080!2.16e-10!40;UBERON:0002616!2.79e-10!49;UBERON:0002780!3.72e-10!39;UBERON:0001890!3.72e-10!39;UBERON:0006240!3.72e-10!39;UBERON:0002791!2.31e-09!29;UBERON:0003528!2.31e-09!29;UBERON:0001893!2.31e-09!29;UBERON:0007811!6.27e-08!86;UBERON:0000153!8.92e-08!94;UBERON:0000956!4.61e-07!21;UBERON:0001869!4.61e-07!21;UBERON:0000203!4.61e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,7.23e-15,64;UBERON:0003075,7.23e-15,64;UBERON:0007284,7.23e-15,64;UBERON:0003056,6.79e-14,49;UBERON:0010371,2.43e-13,73;UBERON:0004121,2.77e-13,95;UBERON:0000924,2.77e-13,95;UBERON:0006601,2.77e-13,95;UBERON:0000073,4.80e-12,54;UBERON:0001049,5.91e-12,52;UBERON:0005068,5.91e-12,52;UBERON:0006241,5.91e-12,52;UBERON:0007135,5.91e-12,52;UBERON:0002020,3.91e-11,34;UBERON:0001016,5.01e-11,75;UBERON:0001017,1.09e-10,73;UBERON:0000955,1.67e-10,47;UBERON:0006238,1.67e-10,47;UBERON:0003080,2.16e-10,40;UBERON:0002780,3.72e-10,39;UBERON:0001890,3.72e-10,39;UBERON:0006240,3.72e-10,39;UBERON:0002616,5.33e-10,46;UBERON:0003528,2.31e-09,29;UBERON:0002791,2.31e-09,29;UBERON:0001893,2.31e-09,29;UBERON:0010314,1.70e-08,92;UBERON:0000956,4.61e-07,21;UBERON:0001869,4.61e-07,21;UBERON:0000203,4.61e-07,21 | |||
|phase1_expression=30.1079832557013,24.0793031271159,21.3849642513082,23.2897442706259,23.5420993074783,13.4303417529512,16.3528848416868,25.8246646883153,14.5012383816217,12.1713553687437,14.2110913627169,9.89174771542172,22.2560948910567,22.4670434216823,5.66286595086627,9.11138703254217,9.09430441566591,23.6596624018678,25.0919413498502,20.3707032863054,97.7997836737302,17.7730802649585,18.0227854505865,23.5188861506308,21.7938817013812,23.5435105287158,21.5380998079537,18.9614684763582,29.453630015738,23.1867719379136,22.8382425974964,5.08024538767705,11.6862309641068,0,17.3310971850765,13.7974755647549,16.5377178572519,72.405972117485,60.9441568728564,65.4404679967248,131.175621830916,83.3315491649304,71.8555322486107,19.1363163322877,20.4781401063419,22.9433440202102,10.1710874765245,20.2763395433815,14.0599156950062,19.8318497055769,15.6784792220406,8.62515386189829,21.643956181448,10.8804321301702,12.0993767691287,12.8629718017974,19.7708073557742,19.0798674142654,47.5443683020055,50.7831340101152,33.5930643858275,7.11573517345177,8.89294796111139,9.89889689009539,14.8329954385046,7.8152812644071,11.085204089181,11.5265491596466,42.0979825972419,36.9916271028832,34.9139435843294,25.4229376119385,32.4676755198872,46.7914853001124,39.6800250015499,36.7687514644008,36.3382407297983,23.7498448838449,23.348193054949,53.0182876675379,58.2776289747349,57.8213841318004,23.7305549151174,23.6360296213306,25.6701056265041,31.8198872311561,42.85387592053,40.0758808524396,25.6711795399494,28.4904781602581,25.218210517046,13.7667820317022,7.47968467078526,16.1910957491345,16.8941868536394,10.7526452903361,26.4035509847693,23.8602451609281,21.0426663728324,17.3136391510067,28.0278405355594,19.2489716121477,12.7402619853323,0,17.5357743219083,16.9751109868316,12.6381111253696,26.8332117339791,41.9479371508418,23.0085315550478,18.5629299639765,20.7036525252256,20.0635482612771,24.1156224884196,24.1056849628195,18.8499886994513,33.8657105796092,38.4634289406965,17.6922110389975,17.9561203441624,18.3298460322127,17.455509112868,18.6391761218122,28.3997373101201,24.7147114039877,33.2094171771169,16.1750418082992,25.7958174327165,17.1544806548637,28.9095934051308,32.4825428001225,37.6963056338593,32.5051478759557,34.2658712822643,34.0772393077679,33.5839414550258,23.5248930494231,22.0200337979865,30.0740082536073,26.3052319858092,26.5445703643916,33.1059030384201,33.3114940139896,42.3480538118359,40.8218994907967,44.4554609388429,35.1381467098983,32.855328083855,20.9100953144857,26.2857451433269,26.7445708729202,18.6316372563439,19.4633074457919,24.0293994900295,19.1377386859387,26.6705917536781,13.3420505589515,13.3820911699652,13.3556844715929,16.9843133479112,20.6382932783365,22.8678818055489,21.5437709382541,19.8731874064878,23.7571353846563,21.6256568617879,15.5598572811779,23.4698338158011,18.1015834904828,21.8342727225197,18.564757386001,20.9065982018225,20.6377108373588,20.1309628140558,30.0714626446702,47.747740143988,39.319835175072,19.5693419331023,28.7939138222566,30.190767341857,22.5518057313663,17.1430995929841,18.2349995952794,19.403013863481,22.302865892592,17.2933902460211,24.3795152536261,26.0632978373908,15.9870551437679,19.7740269903929,22.9106332867176,24.4943766102872,21.8118086096044,22.9639510345555,23.6686244913469,24.4381593414377,20.9468686141036,20.5497952278633,21.5636591593717,20.0749801252259,28.1027722836061,22.4582838337677,21.0481365231876,9.51017102581736,9.63139076054695,9.44420872016386,7.50582449137461,14.7118067448974,14.2590476997595,14.0971107350897,16.6999283578286,9.33508804839477,17.2521847832825,13.7692150637346,12.793544597697,10.6083128737787,15.6075749764064,19.2977408545347,40.0914422661532,22.5494780006877,20.8595169845793,22.2366062365496,21.8261930908307,26.2984824183651,27.1369750610056,22.2452358557891,29.6354070919639,31.0050565508285,32.0504085001549,38.9994689023456,36.0911612099722,38.0427024069375,27.142431109069,12.5098307278303,14.7529281905711,22.9027499432928,34.0367250774119,28.0135930955366,9.01642199571715,20.4501451035542,17.6684602873104,27.3307121007647,21.7577631710127,21.5071918157297,23.3938607786514,18.1168979704853,22.2645885921192,26.3030272120181,29.6465833459893,42.0930924512567,36.1947217281085,14.6013795007149,27.8536700494615,31.6742636107268,9.2921596837974,16.5090832585387,15.1161778482376,16.2200368590072,5.90603785761546,22.1353306519628,17.0562673491026,23.9932261455154,15.6858846489277,21.1744627816997,20.0295356292498,17.5330423521918,36.4270378156553,29.8901416091975,16.4285528404098,27.2208034490122,37.0641088312352,25.1500032818919,25.834196234533,15.8321773539592,18.7737366450968,33.2576351256198,29.3302769413099,22.9191891588657,29.063596805263,19.0588842772972,18.0252239444736,18.876203470682,19.8206968908299,27.8137953015765,12.815316059839,16.0981757011314,17.5934801001226,12.809055076319,11.7557035840082,16.2432502976631,22.7771096191766,23.3718925380509,20.4535961230547,23.8667654503778,26.4140554640248,24.8049749894755,23.3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|phase1_expression=30.1079832557013,24.0793031271159,21.3849642513082,23.2897442706259,23.5420993074783,13.4303417529512,16.3528848416868,25.8246646883153,14.5012383816217,12.1713553687437,14.2110913627169,9.89174771542172,22.2560948910567,22.4670434216823,5.66286595086627,9.11138703254217,9.09430441566591,23.6596624018678,25.0919413498502,20.3707032863054,97.7997836737302,17.7730802649585,18.0227854505865,23.5188861506308,21.7938817013812,23.5435105287158,21.5380998079537,18.9614684763582,29.453630015738,23.1867719379136,22.8382425974964,5.08024538767705,11.6862309641068,0,17.3310971850765,13.7974755647549,16.5377178572519,72.405972117485,60.9441568728564,65.4404679967248,131.175621830916,83.3315491649304,71.8555322486107,19.1363163322877,20.4781401063419,22.9433440202102,10.1710874765245,20.2763395433815,14.0599156950062,19.8318497055769,15.6784792220406,8.62515386189829,21.643956181448,10.8804321301702,12.0993767691287,12.8629718017974,19.7708073557742,19.0798674142654,47.5443683020055,50.7831340101152,33.5930643858275,7.11573517345177,8.89294796111139,9.89889689009539,14.8329954385046,7.8152812644071,11.085204089181,11.5265491596466,42.0979825972419,36.9916271028832,34.9139435843294,25.4229376119385,32.4676755198872,46.7914853001124,39.6800250015499,36.7687514644008,36.3382407297983,23.7498448838449,23.348193054949,53.0182876675379,58.2776289747349,57.8213841318004,23.7305549151174,23.6360296213306,25.6701056265041,31.8198872311561,42.85387592053,40.0758808524396,25.6711795399494,28.4904781602581,25.218210517046,13.7667820317022,7.47968467078526,16.1910957491345,16.8941868536394,10.7526452903361,26.4035509847693,23.8602451609281,21.0426663728324,17.3136391510067,28.0278405355594,19.2489716121477,12.7402619853323,0,17.5357743219083,16.9751109868316,12.6381111253696,26.8332117339791,41.9479371508418,23.0085315550478,18.5629299639765,20.7036525252256,20.0635482612771,24.1156224884196,24.1056849628195,18.8499886994513,33.8657105796092,38.4634289406965,17.6922110389975,17.9561203441624,18.3298460322127,17.455509112868,18.6391761218122,28.3997373101201,24.7147114039877,33.2094171771169,16.1750418082992,25.7958174327165,17.1544806548637,28.9095934051308,32.4825428001225,37.6963056338593,32.5051478759557,34.2658712822643,34.0772393077679,33.5839414550258,23.5248930494231,22.0200337979865,30.0740082536073,26.3052319858092,26.5445703643916,33.1059030384201,33.3114940139896,42.3480538118359,40.8218994907967,44.4554609388429,35.1381467098983,32.855328083855,20.9100953144857,26.2857451433269,26.7445708729202,18.6316372563439,19.4633074457919,24.0293994900295,19.1377386859387,26.6705917536781,13.3420505589515,13.3820911699652,13.3556844715929,16.9843133479112,20.6382932783365,22.8678818055489,21.5437709382541,19.8731874064878,23.7571353846563,21.6256568617879,15.5598572811779,23.4698338158011,18.1015834904828,21.8342727225197,18.564757386001,20.9065982018225,20.6377108373588,20.1309628140558,30.0714626446702,47.747740143988,39.319835175072,19.5693419331023,28.7939138222566,30.190767341857,22.5518057313663,17.1430995929841,18.2349995952794,19.403013863481,22.302865892592,17.2933902460211,24.3795152536261,26.0632978373908,15.9870551437679,19.7740269903929,22.9106332867176,24.4943766102872,21.8118086096044,22.9639510345555,23.6686244913469,24.4381593414377,20.9468686141036,20.5497952278633,21.5636591593717,20.0749801252259,28.1027722836061,22.4582838337677,21.0481365231876,9.51017102581736,9.63139076054695,9.44420872016386,7.50582449137461,14.7118067448974,14.2590476997595,14.0971107350897,16.6999283578286,9.33508804839477,17.2521847832825,13.7692150637346,12.793544597697,10.6083128737787,15.6075749764064,19.2977408545347,40.0914422661532,22.5494780006877,20.8595169845793,22.2366062365496,21.8261930908307,26.2984824183651,27.1369750610056,22.2452358557891,29.6354070919639,31.0050565508285,32.0504085001549,38.9994689023456,36.0911612099722,38.0427024069375,27.142431109069,12.5098307278303,14.7529281905711,22.9027499432928,34.0367250774119,28.0135930955366,9.01642199571715,20.4501451035542,17.6684602873104,27.3307121007647,21.7577631710127,21.5071918157297,23.3938607786514,18.1168979704853,22.2645885921192,26.3030272120181,29.6465833459893,42.0930924512567,36.1947217281085,14.6013795007149,27.8536700494615,31.6742636107268,9.2921596837974,16.5090832585387,15.1161778482376,16.2200368590072,5.90603785761546,22.1353306519628,17.0562673491026,23.9932261455154,15.6858846489277,21.1744627816997,20.0295356292498,17.5330423521918,36.4270378156553,29.8901416091975,16.4285528404098,27.2208034490122,37.0641088312352,25.1500032818919,25.834196234533,15.8321773539592,18.7737366450968,33.2576351256198,29.3302769413099,22.9191891588657,29.063596805263,19.0588842772972,18.0252239444736,18.876203470682,19.8206968908299,27.8137953015765,12.815316059839,16.0981757011314,17.5934801001226,12.809055076319,11.7557035840082,16.2432502976631,22.7771096191766,23.3718925380509,20.4535961230547,23.8667654503778,26.4140554640248,24.8049749894755,23.3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| ||
|short_description=p1@Amn1 | |short_description=p1@Amn1 | ||
}} | }} |
Latest revision as of 22:59, 26 September 2015
Short description: | p1@Amn1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Amn1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000095319, ENSMUST00000111535, ENSMUST00000141346, ENSMUST00000149149, ENSMUST00000150610, ENSMUST00000152062, NM_001113424, uc009eua.1, uc012evy.1, uc012evz.1_5end |
EntrezGene: | Amn1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.27e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.27e-09 | 23 |
neuron | 1.62e-07 | 33 |
neuronal stem cell | 1.62e-07 | 33 |
neuroblast | 1.62e-07 | 33 |
electrically signaling cell | 1.62e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 7.23e-15 | 64 |
neural plate | 7.23e-15 | 64 |
presumptive neural plate | 7.23e-15 | 64 |
pre-chordal neural plate | 6.79e-14 | 49 |
ecto-epithelium | 2.43e-13 | 73 |
ectoderm-derived structure | 2.77e-13 | 95 |
ectoderm | 2.77e-13 | 95 |
presumptive ectoderm | 2.77e-13 | 95 |
regional part of nervous system | 4.80e-12 | 54 |
neural tube | 5.91e-12 | 52 |
neural rod | 5.91e-12 | 52 |
future spinal cord | 5.91e-12 | 52 |
neural keel | 5.91e-12 | 52 |
gray matter | 3.91e-11 | 34 |
nervous system | 5.01e-11 | 75 |
central nervous system | 1.09e-10 | 73 |
brain | 1.67e-10 | 47 |
future brain | 1.67e-10 | 47 |
anterior neural tube | 2.16e-10 | 40 |
regional part of forebrain | 3.72e-10 | 39 |
forebrain | 3.72e-10 | 39 |
future forebrain | 3.72e-10 | 39 |
regional part of brain | 5.33e-10 | 46 |
brain grey matter | 2.31e-09 | 29 |
regional part of telencephalon | 2.31e-09 | 29 |
telencephalon | 2.31e-09 | 29 |
structure with developmental contribution from neural crest | 1.70e-08 | 92 |
cerebral cortex | 4.61e-07 | 21 |
cerebral hemisphere | 4.61e-07 | 21 |
pallium | 4.61e-07 | 21 |