FFCP PHASE1:Mm9::chr12:88019635..88019746,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=238328 | |EntrezGene=238328 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q8C1W1,A0PCF8 | |UniProt=Q8C1W1,A0PCF8 | ||
|association_with_transcript=0bp_to_ENSMUST00000021681,NM_177354,uc007ohx.2_5end | |association_with_transcript=0bp_to_ENSMUST00000021681,NM_177354,uc007ohx.2_5end | ||
|cluster_id=chr12:88019635..88019746,+ | |||
|description=CAGE_peak_1_at_Vash1_5end | |description=CAGE_peak_1_at_Vash1_5end | ||
|id=chr12:88019635..88019746,+ | |id=chr12:88019635..88019746,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.34e-17!33;CL:0000047!1.34e-17!33;CL:0000031!1.34e-17!33;CL:0000404!1.34e-17!33;CL:0002319!9.60e-16!43;CL:0000221!1.53e-15!44;CL:0000133!1.53e-15!44;CL:0000117!2.98e-12!23;CL:0000337!2.98e-12!23;CL:0000393!5.01e-12!39;CL:0000211!5.01e-12!39;CL:0000055!6.73e-11!50;CL:0000107!5.79e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.02e-17,33;CL:0000047,1.02e-17,33;CL:0000031,1.02e-17,33;CL:0000404,1.02e-17,33;CL:0002319,7.59e-16,43;CL:0000221,1.21e-15,44;CL:0000133,1.21e-15,44;CL:0000117,2.50e-12,23;CL:0000337,2.50e-12,23;CL:0000393,6.40e-12,39;CL:0000211,6.40e-12,39;CL:0000107,5.29e-07,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.31e-23!73;UBERON:0005743!2.31e-23!73;UBERON:0000073!2.90e-23!75;UBERON:0001016!2.90e-23!75;UBERON:0004121!1.29e-21!102;UBERON:0000924!1.29e-21!102;UBERON:0006601!1.29e-21!102;UBERON:0002346!2.26e-17!71;UBERON:0003075!2.26e-17!71;UBERON:0007284!2.26e-17!71;UBERON:0000033!4.01e-14!63;UBERON:0001049!6.80e-14!52;UBERON:0005068!6.80e-14!52;UBERON:0006241!6.80e-14!52;UBERON:0007135!6.80e-14!52;UBERON:0003056!7.81e-13!49;UBERON:0000955!4.48e-12!50;UBERON:0006238!4.48e-12!50;UBERON:0002020!6.88e-12!34;UBERON:0002616!1.33e-11!49;UBERON:0000468!4.56e-11!333;UBERON:0002780!7.14e-10!39;UBERON:0001890!7.14e-10!39;UBERON:0006240!7.14e-10!39;UBERON:0003080!7.94e-10!40;UBERON:0002791!2.55e-09!29;UBERON:0003528!2.55e-09!29;UBERON:0001893!2.55e-09!29;UBERON:0000025!2.91e-09!114;UBERON:0000922!9.39e-08!328;UBERON:0004111!1.40e-07!122;UBERON:0002410!5.79e-07!9;UBERON:0000956!9.13e-07!21;UBERON:0001869!9.13e-07!21;UBERON:0000203!9.13e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.61e-23,73;UBERON:0001016,2.03e-23,75;UBERON:0004121,1.11e-22,95;UBERON:0000924,1.11e-22,95;UBERON:0006601,1.11e-22,95;UBERON:0002346,5.72e-19,64;UBERON:0003075,5.72e-19,64;UBERON:0007284,5.72e-19,64;UBERON:0010314,7.12e-19,92;UBERON:0010371,3.07e-16,73;UBERON:0000073,3.07e-14,54;UBERON:0001049,5.54e-14,52;UBERON:0005068,5.54e-14,52;UBERON:0006241,5.54e-14,52;UBERON:0007135,5.54e-14,52;UBERON:0003056,6.48e-13,49;UBERON:0002020,5.80e-12,34;UBERON:0000955,1.85e-11,47;UBERON:0006238,1.85e-11,47;UBERON:0002616,5.47e-11,46;UBERON:0002780,6.22e-10,39;UBERON:0001890,6.22e-10,39;UBERON:0006240,6.22e-10,39;UBERON:0003080,6.92e-10,40;UBERON:0003528,2.25e-09,29;UBERON:0002791,2.25e-09,29;UBERON:0001893,2.25e-09,29;UBERON:0000025,5.59e-09,114;UBERON:0000922,2.75e-08,320;UBERON:0004111,2.69e-07,122;UBERON:0002410,5.29e-07,9;UBERON:0000956,8.37e-07,21;UBERON:0001869,8.37e-07,21;UBERON:0000203,8.37e-07,21 | |||
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| ||
|short_description=p1@Vash1 | |short_description=p1@Vash1 | ||
}} | }} |
Latest revision as of 23:13, 26 September 2015
Short description: | p1@Vash1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vash1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000021681, NM_177354, uc007ohx.2_5end |
EntrezGene: | Vash1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.02e-17 | 33 |
neuronal stem cell | 1.02e-17 | 33 |
neuroblast | 1.02e-17 | 33 |
electrically signaling cell | 1.02e-17 | 33 |
neural cell | 7.59e-16 | 43 |
ectodermal cell | 1.21e-15 | 44 |
neurectodermal cell | 1.21e-15 | 44 |
CNS neuron (sensu Vertebrata) | 2.50e-12 | 23 |
neuroblast (sensu Vertebrata) | 2.50e-12 | 23 |
electrically responsive cell | 6.40e-12 | 39 |
electrically active cell | 6.40e-12 | 39 |
autonomic neuron | 5.29e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.61e-23 | 73 |
nervous system | 2.03e-23 | 75 |
ectoderm-derived structure | 1.11e-22 | 95 |
ectoderm | 1.11e-22 | 95 |
presumptive ectoderm | 1.11e-22 | 95 |
neurectoderm | 5.72e-19 | 64 |
neural plate | 5.72e-19 | 64 |
presumptive neural plate | 5.72e-19 | 64 |
structure with developmental contribution from neural crest | 7.12e-19 | 92 |
ecto-epithelium | 3.07e-16 | 73 |
regional part of nervous system | 3.07e-14 | 54 |
neural tube | 5.54e-14 | 52 |
neural rod | 5.54e-14 | 52 |
future spinal cord | 5.54e-14 | 52 |
neural keel | 5.54e-14 | 52 |
pre-chordal neural plate | 6.48e-13 | 49 |
gray matter | 5.80e-12 | 34 |
brain | 1.85e-11 | 47 |
future brain | 1.85e-11 | 47 |
regional part of brain | 5.47e-11 | 46 |
regional part of forebrain | 6.22e-10 | 39 |
forebrain | 6.22e-10 | 39 |
future forebrain | 6.22e-10 | 39 |
anterior neural tube | 6.92e-10 | 40 |
brain grey matter | 2.25e-09 | 29 |
regional part of telencephalon | 2.25e-09 | 29 |
telencephalon | 2.25e-09 | 29 |
tube | 5.59e-09 | 114 |
embryo | 2.75e-08 | 320 |
anatomical conduit | 2.69e-07 | 122 |
autonomic nervous system | 5.29e-07 | 9 |
cerebral cortex | 8.37e-07 | 21 |
cerebral hemisphere | 8.37e-07 | 21 |
pallium | 8.37e-07 | 21 |