FFCP PHASE1:Mm9::chr2:78709277..78709299,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:78709277..78709299,+
|short_description=p6@Ube2e3
|description=CAGE_peak_6_at_Ube2e3_5end
|association_with_transcript=73bp_to_ENSMUST00000028398,NM_009454...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=22193 | |EntrezGene=22193 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=P52483,B1AWL1,D3YW10 | |UniProt=P52483,B1AWL1,D3YW10 | ||
|association_with_transcript=73bp_to_ENSMUST00000028398,NM_009454,uc008kgm.1,uc008kgn.1_5end | |||
|cluster_id=chr2:78709277..78709299,+ | |||
|description=CAGE_peak_6_at_Ube2e3_5end | |||
|id=chr2:78709277..78709299,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.99e-12!33;CL:0000047!2.99e-12!33;CL:0000031!2.99e-12!33;CL:0000404!2.99e-12!33;CL:0000393!3.35e-09!39;CL:0000211!3.35e-09!39;CL:0000221!3.87e-09!44;CL:0000133!3.87e-09!44;CL:0002319!7.65e-09!43;CL:0000117!1.26e-08!23;CL:0000337!1.26e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.40e-12,33;CL:0000047,1.40e-12,33;CL:0000031,1.40e-12,33;CL:0000404,1.40e-12,33;CL:0000221,1.45e-09,44;CL:0000133,1.45e-09,44;CL:0002319,2.95e-09,43;CL:0000393,7.91e-09,39;CL:0000211,7.91e-09,39;CL:0000117,8.29e-09,23;CL:0000337,8.29e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.54e-13!73;UBERON:0005743!3.54e-13!73;UBERON:0002346!7.87e-13!71;UBERON:0003075!7.87e-13!71;UBERON:0007284!7.87e-13!71;UBERON:0000073!4.00e-12!75;UBERON:0001016!4.00e-12!75;UBERON:0004121!3.59e-11!102;UBERON:0000924!3.59e-11!102;UBERON:0006601!3.59e-11!102;UBERON:0000033!3.68e-11!63;UBERON:0003056!3.51e-10!49;UBERON:0001049!1.87e-09!52;UBERON:0005068!1.87e-09!52;UBERON:0006241!1.87e-09!52;UBERON:0007135!1.87e-09!52;UBERON:0000153!5.85e-09!94;UBERON:0000955!5.55e-08!50;UBERON:0006238!5.55e-08!50;UBERON:0007811!5.81e-08!86;UBERON:0002616!1.54e-07!49;UBERON:0002020!4.16e-07!34;UBERON:0002780!5.99e-07!39;UBERON:0001890!5.99e-07!39;UBERON:0006240!5.99e-07!39;UBERON:0003080!6.98e-07!40 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.06e-15,64;UBERON:0003075,4.06e-15,64;UBERON:0007284,4.06e-15,64;UBERON:0001017,4.48e-14,73;UBERON:0004121,6.71e-13,95;UBERON:0000924,6.71e-13,95;UBERON:0006601,6.71e-13,95;UBERON:0001016,7.04e-13,75;UBERON:0010371,1.24e-12,73;UBERON:0010314,3.72e-11,92;UBERON:0003056,1.13e-10,49;UBERON:0000073,4.77e-10,54;UBERON:0001049,6.61e-10,52;UBERON:0005068,6.61e-10,52;UBERON:0006241,6.61e-10,52;UBERON:0007135,6.61e-10,52;UBERON:0000955,1.74e-08,47;UBERON:0006238,1.74e-08,47;UBERON:0002616,5.20e-08,46;UBERON:0002020,1.84e-07,34;UBERON:0002780,2.74e-07,39;UBERON:0001890,2.74e-07,39;UBERON:0006240,2.74e-07,39;UBERON:0003080,3.23e-07,40 | |||
|phase1_expression=4.48416771893423,0,0.454999239389536,0,1.00179145989269,0.671517087647559,0,0.129123323441576,0.703943610758334,1.17032263160997,0.34243593645101,0.0797721589953364,0.171200729931206,0.0874204024189974,2.33176833270964,0.607425802169478,2.79824751251259,0.157731082679119,0.137114433605739,0,1.44573593256819,0.695036658406197,0.522399578277871,0,0.91763712426868,0,0,0.430942465371778,0,0.504060259519861,0.665191531965914,1.90509202037889,1.23012957516914,0,0.577703239502549,0.664938581433969,1.22501613757421,0,1.5626706890476,0.523523743973798,0,0,0.485510353031154,0.881277725829041,0.709638518536602,1.10128051297009,3.9119567217402,3.2703773457067,1.75748946187577,1.74986909166855,1.25987779462826,0,0.335565212115473,0,0.336093799142464,0.771778308107841,0.573066879877513,1.54701627683233,10.3181395038395,9.52183762689659,15.2119536841483,1.35537812827653,0,0.449949858640699,0.988866362566974,0,0.299600110518405,1.15265491596466,5.80661828927475,5.67024940993101,4.6271491497304,3.71346279724945,3.75476519617743,8.94182834269164,7.95517409451362,6.43453150627015,2.20231761998777,1.91531007127782,1.22885226604995,15.0350368012421,12.0763689555181,11.4600941522487,0.837548997004143,2.8138130501584,0.30559649555362,4.71405736757868,7.40332740155335,13.6071595452469,0.454357159999104,0.604572480854284,0.869593466105033,0,0.679971333707751,0.539703191637817,0.649776417447669,0,0.561777680527007,1.02258193546835,0.259786004602869,1.41335829804136,3.38024207464033,0,2.54805239706646,0,1.29894624606728,1.01343946190039,0,0.5709193985953,0.517875767294343,0.445326417194474,2.08182392119363,2.74018930480927,1.84492397804847,1.05505848386836,1.29347577849275,0.376999773989026,0.741584903203122,0.578397427679647,0.884610551949874,1.45590164952668,1.10420759230197,0,0,1.46390398505774,5.65506108396329,1.02182822083437,1.67741174308288,0.599902730993408,1.27070227073065,1.64769703345305,0.457500602818626,6.15706325353036,1.56441888173049,3.06858548796397,3.32460871295296,2.27137768294861,2.85150218780886,1.11966273549084,0.505445516867349,1.26265113531884,6.50602214813519,7.81667155073808,4.86167750474443,4.67184935290717,5.23881043465224,6.02134485338794,6.74652416830048,3.10444044886819,7.11374376678379,5.10586416453112,3.87092473160687,4.16471891612392,2.78047249225598,1.39300866608867,1.02891068203972,4.37875387000685,0.702213187313235,0.772043721344145,1.13665399758237,2.69263504296152,2.57978665979206,2.70093092191522,1.89395788468168,1.77087808572663,2.31400669331067,1.39520366850245,2.41446061259657,2.45207218971056,1.6455984991348,0.492502392237286,1.21603214318784,0.438599962275997,0.878200461164203,0.671032093801859,3.36463917702604,6.48299057989492,0,0.528901133327089,4.26576501070468,3.94802342162745,2.31961430379768,1.4117846723634,1.33426826306922,1.52180500890047,0,0.658795818896044,1.25667604400135,1.98956472041151,0.974820435595601,0.898819408654221,0,0.597423819763102,4.1726938209678,5.82667414309617,1.1270773567308,4.2766778847516,2.52138233317913,2.38461787627083,2.15004226222475,0.885660887877613,0.941992367048249,1.23397163921801,0.592905254174298,1.50160595144485,0.982794975566015,1.34917267430912,1.62288097110802,1.20588579876208,1.2731292589071,1.15078454980324,1.45921704097532,0.549122826376163,4.31304619582064,0,0.624075346229121,0,0.358794827043824,0.482443521363367,0.369506380333209,3.97931964718018,3.25929952884052,3.56464680127895,4.69380496577004,2.34508760418542,2.61848004974615,2.14647012643579,1.7339865851681,1.55025282754142,1.91345722388985,0.81931657357869,0.863424909329478,1.3018415272336,0,1.08781136763742,0.983528546038072,0,1.76605648986571,1.40654023910644,1.3114795630134,1.26235463602186,6.31016438832513,5.0757036758563,4.30846795465598,3.58453196928828,3.56477878531831,1.98153571552183,3.64329631507405,3.79932615284705,4.34816555741176,6.10510501201433,0.425820255624806,3.5613120733451,3.25773918707152,1.31976098378028,0,4.12727081463468,2.72091201268276,1.50884063804718,2.06711325016541,0.614870295887855,0.516856586336442,1.09060118843252,0.712994756769443,0.632073515871632,0,3.09406629744561,1.02131881726136,7.0223826672211,4.52755393239641,5.5727629108214,2.12808280370728,3.92411398724555,2.46823530903181,2.13125464380219,0.23467170806371,0.847328283455281,0,0.32977250588296,1.45317984026315,1.08563264870681,1.19372344003136,0.328281799490123,0,1.11255181206306,0.854354403989263,3.09580301944834,1.66675074632741,1.13021074202815,1.23024804948923,0.915112692826091,2.03974115992626,2.6590775941495,2.48759952847963,0,3.63786392618306,2.43983360552218,2.91614420218863,2.09088296014469,1.09181281873089,0.944050424693745,0.826534557253359,1.04702376793612,0.388844919875379,1.24267862617385,2.25477175473676,5.08356256549528,4.13646226142744,4.66682852025714,4.90807329215378,2.19642963138012,2.8165737274981,2.604087696879,1.8874681996628,3.8653459332161,2.30424005006292,1.26404448251271,2.8381530140623,2.2596410576262,1.55904987573354,2.68540043501222,0.993406773906324,2.88469078847925,1.03382669022204,3.12995994839258,1.82896335972,1.91569751759997,2.92373642219257,2.50150788264857,1.16876902181569,0.226730383615211,0.887943813496259,1.16628013592318,0.839423081820392,0.579568782096571,0.375364950902364,0.915758121336325,1.07184189539533,0.501572104035363,3.3885110557024,1.84130094602871,4.58316410751517,3.43706364687375,2.05524755931193,3.0215755895588,0,2.70192721934532,0.453142408984205,2.07104124700728,7.26511433089237,7.98049746802062,5.80494259564056,1.94485373654635,3.98265008993166,4.77993121970037,1.77797382241292,1.64828045791115,2.24643446714271,1.26348605881899,1.2673964994512,3.01802146217722,2.71560371662659,2.36893063898016,2.01024141344646,3.33405583898152,1.85414921511769,2.12200142510076,2.88460130562315,1.91358596174717,4.80016953339582,3.01708870470874,2.86123427936785,1.74415699958794,2.1645157495526,1.77690676572521,2.92684756596436,2.10455769150274,2.71608227691724,0.561142271657738,2.49133538060766,2.26560309463796,2.86461730218783,1.70430525304563,0.578719832943424,2.74791635731741,1.40358965067245,1.28922632428979,2.10417165275728,0.441182838239031,0.463735671240843 | |phase1_expression=4.48416771893423,0,0.454999239389536,0,1.00179145989269,0.671517087647559,0,0.129123323441576,0.703943610758334,1.17032263160997,0.34243593645101,0.0797721589953364,0.171200729931206,0.0874204024189974,2.33176833270964,0.607425802169478,2.79824751251259,0.157731082679119,0.137114433605739,0,1.44573593256819,0.695036658406197,0.522399578277871,0,0.91763712426868,0,0,0.430942465371778,0,0.504060259519861,0.665191531965914,1.90509202037889,1.23012957516914,0,0.577703239502549,0.664938581433969,1.22501613757421,0,1.5626706890476,0.523523743973798,0,0,0.485510353031154,0.881277725829041,0.709638518536602,1.10128051297009,3.9119567217402,3.2703773457067,1.75748946187577,1.74986909166855,1.25987779462826,0,0.335565212115473,0,0.336093799142464,0.771778308107841,0.573066879877513,1.54701627683233,10.3181395038395,9.52183762689659,15.2119536841483,1.35537812827653,0,0.449949858640699,0.988866362566974,0,0.299600110518405,1.15265491596466,5.80661828927475,5.67024940993101,4.6271491497304,3.71346279724945,3.75476519617743,8.94182834269164,7.95517409451362,6.43453150627015,2.20231761998777,1.91531007127782,1.22885226604995,15.0350368012421,12.0763689555181,11.4600941522487,0.837548997004143,2.8138130501584,0.30559649555362,4.71405736757868,7.40332740155335,13.6071595452469,0.454357159999104,0.604572480854284,0.869593466105033,0,0.679971333707751,0.539703191637817,0.649776417447669,0,0.561777680527007,1.02258193546835,0.259786004602869,1.41335829804136,3.38024207464033,0,2.54805239706646,0,1.29894624606728,1.01343946190039,0,0.5709193985953,0.517875767294343,0.445326417194474,2.08182392119363,2.74018930480927,1.84492397804847,1.05505848386836,1.29347577849275,0.376999773989026,0.741584903203122,0.578397427679647,0.884610551949874,1.45590164952668,1.10420759230197,0,0,1.46390398505774,5.65506108396329,1.02182822083437,1.67741174308288,0.599902730993408,1.27070227073065,1.64769703345305,0.457500602818626,6.15706325353036,1.56441888173049,3.06858548796397,3.32460871295296,2.27137768294861,2.85150218780886,1.11966273549084,0.505445516867349,1.26265113531884,6.50602214813519,7.81667155073808,4.86167750474443,4.67184935290717,5.23881043465224,6.02134485338794,6.74652416830048,3.10444044886819,7.11374376678379,5.10586416453112,3.87092473160687,4.16471891612392,2.78047249225598,1.39300866608867,1.02891068203972,4.37875387000685,0.702213187313235,0.772043721344145,1.13665399758237,2.69263504296152,2.57978665979206,2.70093092191522,1.89395788468168,1.77087808572663,2.31400669331067,1.39520366850245,2.41446061259657,2.45207218971056,1.6455984991348,0.492502392237286,1.21603214318784,0.438599962275997,0.878200461164203,0.671032093801859,3.36463917702604,6.48299057989492,0,0.528901133327089,4.26576501070468,3.94802342162745,2.31961430379768,1.4117846723634,1.33426826306922,1.52180500890047,0,0.658795818896044,1.25667604400135,1.98956472041151,0.974820435595601,0.898819408654221,0,0.597423819763102,4.1726938209678,5.82667414309617,1.1270773567308,4.2766778847516,2.52138233317913,2.38461787627083,2.15004226222475,0.885660887877613,0.941992367048249,1.23397163921801,0.592905254174298,1.50160595144485,0.982794975566015,1.34917267430912,1.62288097110802,1.20588579876208,1.2731292589071,1.15078454980324,1.45921704097532,0.549122826376163,4.31304619582064,0,0.624075346229121,0,0.358794827043824,0.482443521363367,0.369506380333209,3.97931964718018,3.25929952884052,3.56464680127895,4.69380496577004,2.34508760418542,2.61848004974615,2.14647012643579,1.7339865851681,1.55025282754142,1.91345722388985,0.81931657357869,0.863424909329478,1.3018415272336,0,1.08781136763742,0.983528546038072,0,1.76605648986571,1.40654023910644,1.3114795630134,1.26235463602186,6.31016438832513,5.0757036758563,4.30846795465598,3.58453196928828,3.56477878531831,1.98153571552183,3.64329631507405,3.79932615284705,4.34816555741176,6.10510501201433,0.425820255624806,3.5613120733451,3.25773918707152,1.31976098378028,0,4.12727081463468,2.72091201268276,1.50884063804718,2.06711325016541,0.614870295887855,0.516856586336442,1.09060118843252,0.712994756769443,0.632073515871632,0,3.09406629744561,1.02131881726136,7.0223826672211,4.52755393239641,5.5727629108214,2.12808280370728,3.92411398724555,2.46823530903181,2.13125464380219,0.23467170806371,0.847328283455281,0,0.32977250588296,1.45317984026315,1.08563264870681,1.19372344003136,0.328281799490123,0,1.11255181206306,0.854354403989263,3.09580301944834,1.66675074632741,1.13021074202815,1.23024804948923,0.915112692826091,2.03974115992626,2.6590775941495,2.48759952847963,0,3.63786392618306,2.43983360552218,2.91614420218863,2.09088296014469,1.09181281873089,0.944050424693745,0.826534557253359,1.04702376793612,0.388844919875379,1.24267862617385,2.25477175473676,5.08356256549528,4.13646226142744,4.66682852025714,4.90807329215378,2.19642963138012,2.8165737274981,2.604087696879,1.8874681996628,3.8653459332161,2.30424005006292,1.26404448251271,2.8381530140623,2.2596410576262,1.55904987573354,2.68540043501222,0.993406773906324,2.88469078847925,1.03382669022204,3.12995994839258,1.82896335972,1.91569751759997,2.92373642219257,2.50150788264857,1.16876902181569,0.226730383615211,0.887943813496259,1.16628013592318,0.839423081820392,0.579568782096571,0.375364950902364,0.915758121336325,1.07184189539533,0.501572104035363,3.3885110557024,1.84130094602871,4.58316410751517,3.43706364687375,2.05524755931193,3.0215755895588,0,2.70192721934532,0.453142408984205,2.07104124700728,7.26511433089237,7.98049746802062,5.80494259564056,1.94485373654635,3.98265008993166,4.77993121970037,1.77797382241292,1.64828045791115,2.24643446714271,1.26348605881899,1.2673964994512,3.01802146217722,2.71560371662659,2.36893063898016,2.01024141344646,3.33405583898152,1.85414921511769,2.12200142510076,2.88460130562315,1.91358596174717,4.80016953339582,3.01708870470874,2.86123427936785,1.74415699958794,2.1645157495526,1.77690676572521,2.92684756596436,2.10455769150274,2.71608227691724,0.561142271657738,2.49133538060766,2.26560309463796,2.86461730218783,1.70430525304563,0.578719832943424,2.74791635731741,1.40358965067245,1.28922632428979,2.10417165275728,0.441182838239031,0.463735671240843 | ||
|short_description=p6@Ube2e3 | |||
}} | }} |
Latest revision as of 00:38, 27 September 2015
Short description: | p6@Ube2e3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Ube2e3_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 73bp_to_ENSMUST00000028398, NM_009454, uc008kgm.1, uc008kgn.1_5end |
EntrezGene: | Ube2e3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.40e-12 | 33 |
neuronal stem cell | 1.40e-12 | 33 |
neuroblast | 1.40e-12 | 33 |
electrically signaling cell | 1.40e-12 | 33 |
ectodermal cell | 1.45e-09 | 44 |
neurectodermal cell | 1.45e-09 | 44 |
neural cell | 2.95e-09 | 43 |
electrically responsive cell | 7.91e-09 | 39 |
electrically active cell | 7.91e-09 | 39 |
CNS neuron (sensu Vertebrata) | 8.29e-09 | 23 |
neuroblast (sensu Vertebrata) | 8.29e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.06e-15 | 64 |
neural plate | 4.06e-15 | 64 |
presumptive neural plate | 4.06e-15 | 64 |
central nervous system | 4.48e-14 | 73 |
ectoderm-derived structure | 6.71e-13 | 95 |
ectoderm | 6.71e-13 | 95 |
presumptive ectoderm | 6.71e-13 | 95 |
nervous system | 7.04e-13 | 75 |
ecto-epithelium | 1.24e-12 | 73 |
structure with developmental contribution from neural crest | 3.72e-11 | 92 |
pre-chordal neural plate | 1.13e-10 | 49 |
regional part of nervous system | 4.77e-10 | 54 |
neural tube | 6.61e-10 | 52 |
neural rod | 6.61e-10 | 52 |
future spinal cord | 6.61e-10 | 52 |
neural keel | 6.61e-10 | 52 |
brain | 1.74e-08 | 47 |
future brain | 1.74e-08 | 47 |
regional part of brain | 5.20e-08 | 46 |
gray matter | 1.84e-07 | 34 |
regional part of forebrain | 2.74e-07 | 39 |
forebrain | 2.74e-07 | 39 |
future forebrain | 2.74e-07 | 39 |
anterior neural tube | 3.23e-07 | 40 |