FFCP PHASE1:Mm9::chr15:99532709..99532743,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:99532709..99532743,+
|short_description=p1@Smarcd1
|description=CAGE_peak_1_at_Smarcd1_5end
|association_with_transcript=0bp_to_ENSMUST00000023759,NM_0318...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=83797 | |EntrezGene=83797 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=108 | |||
|TSSclassifier=NA | |||
|UniProt=Q61466,Q68FH8 | |UniProt=Q61466,Q68FH8 | ||
|association_with_transcript=0bp_to_ENSMUST00000023759,NM_031842,uc007xqb.1_5end | |||
|cluster_id=chr15:99532709..99532743,+ | |||
|description=CAGE_peak_1_at_Smarcd1_5end | |||
|id=chr15:99532709..99532743,+ | |||
|ontology_enrichment_celltype=CL:0000221!9.59e-15!44;CL:0000133!9.59e-15!44;CL:0000540!1.44e-14!33;CL:0000047!1.44e-14!33;CL:0000031!1.44e-14!33;CL:0000404!1.44e-14!33;CL:0002319!2.47e-14!43;CL:0000117!2.94e-10!23;CL:0000337!2.94e-10!23;CL:0000393!1.99e-09!39;CL:0000211!1.99e-09!39;CL:0000055!4.29e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.59e-15,44;CL:0000133,9.59e-15,44;CL:0000540,1.44e-14,33;CL:0000047,1.44e-14,33;CL:0000031,1.44e-14,33;CL:0000404,1.44e-14,33;CL:0002319,2.47e-14,43;CL:0000117,2.94e-10,23;CL:0000337,2.94e-10,23;CL:0000393,1.99e-09,39;CL:0000211,1.99e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.73e-21,73;UBERON:0001016,8.77e-21,75;UBERON:0004121,7.01e-19,95;UBERON:0000924,7.01e-19,95;UBERON:0006601,7.01e-19,95;UBERON:0002346,5.85e-18,64;UBERON:0003075,5.85e-18,64;UBERON:0007284,5.85e-18,64;UBERON:0010371,6.08e-15,73;UBERON:0003056,5.04e-14,49;UBERON:0000073,9.64e-14,54;UBERON:0001049,1.71e-13,52;UBERON:0005068,1.71e-13,52;UBERON:0006241,1.71e-13,52;UBERON:0007135,1.71e-13,52;UBERON:0010314,9.59e-13,92;UBERON:0002020,2.72e-12,34;UBERON:0000955,1.01e-11,47;UBERON:0006238,1.01e-11,47;UBERON:0002616,3.43e-11,46;UBERON:0003080,4.08e-11,40;UBERON:0002780,4.26e-11,39;UBERON:0001890,4.26e-11,39;UBERON:0006240,4.26e-11,39;UBERON:0003528,9.01e-10,29;UBERON:0002791,9.01e-10,29;UBERON:0001893,9.01e-10,29;UBERON:0000956,1.23e-07,21;UBERON:0001869,1.23e-07,21;UBERON:0000203,1.23e-07,21 | |||
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| ||
|short_description=p1@Smarcd1 | |||
}} | }} |
Latest revision as of 14:05, 1 October 2015
Short description: | p1@Smarcd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Smarcd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:108 |
Association with transcript: | 0bp_to_ENSMUST00000023759, NM_031842, uc007xqb.1_5end |
EntrezGene: | Smarcd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.59e-15 | 44 |
neurectodermal cell | 9.59e-15 | 44 |
neuron | 1.44e-14 | 33 |
neuronal stem cell | 1.44e-14 | 33 |
neuroblast | 1.44e-14 | 33 |
electrically signaling cell | 1.44e-14 | 33 |
neural cell | 2.47e-14 | 43 |
CNS neuron (sensu Vertebrata) | 2.94e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.94e-10 | 23 |
electrically responsive cell | 1.99e-09 | 39 |
electrically active cell | 1.99e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.73e-21 | 73 |
nervous system | 8.77e-21 | 75 |
ectoderm-derived structure | 7.01e-19 | 95 |
ectoderm | 7.01e-19 | 95 |
presumptive ectoderm | 7.01e-19 | 95 |
neurectoderm | 5.85e-18 | 64 |
neural plate | 5.85e-18 | 64 |
presumptive neural plate | 5.85e-18 | 64 |
ecto-epithelium | 6.08e-15 | 73 |
pre-chordal neural plate | 5.04e-14 | 49 |
regional part of nervous system | 9.64e-14 | 54 |
neural tube | 1.71e-13 | 52 |
neural rod | 1.71e-13 | 52 |
future spinal cord | 1.71e-13 | 52 |
neural keel | 1.71e-13 | 52 |
structure with developmental contribution from neural crest | 9.59e-13 | 92 |
gray matter | 2.72e-12 | 34 |
brain | 1.01e-11 | 47 |
future brain | 1.01e-11 | 47 |
regional part of brain | 3.43e-11 | 46 |
anterior neural tube | 4.08e-11 | 40 |
regional part of forebrain | 4.26e-11 | 39 |
forebrain | 4.26e-11 | 39 |
future forebrain | 4.26e-11 | 39 |
brain grey matter | 9.01e-10 | 29 |
regional part of telencephalon | 9.01e-10 | 29 |
telencephalon | 9.01e-10 | 29 |
cerebral cortex | 1.23e-07 | 21 |
cerebral hemisphere | 1.23e-07 | 21 |
pallium | 1.23e-07 | 21 |