FFCP PHASE1:Mm9::chr13:41345210..41345232,+: Difference between revisions
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{{FFCP|EntrezGene=108934|HGNC=|MCL_coexpression_id=60|UniProt=E9Q942|association_with_transcript=0bp_to_ENSMUST00000165561,NM_001135577,uc007qfc.2_5end|description=CAGE_peak_1_at_BC024659_5end|id=chr13:41345210..41345232,+|ontology_enrichment_celltype=CL:0000540!2.06e-08!33;CL:0000047!2.06e-08!33;CL:0000031!2.06e-08!33;CL:0000404!2.06e-08!33|ontology_enrichment_celltype_v019_2=CL:0000540,2.06e-08,33;CL:0000047,2.06e-08,33;CL:0000031,2.06e-08,33;CL:0000404,2.06e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.93e-14!73;UBERON:0005743!1.93e-14!73;UBERON:0000073!5.01e-14!75;UBERON:0001016!5.01e-14!75;UBERON:0004121!1.12e-12!102;UBERON:0000924!1.12e-12!102;UBERON:0006601!1.12e-12!102;UBERON:0007811!5.01e-12!86;UBERON:0002020!8.09e-12!34;UBERON:0001049!2.53e-11!52;UBERON:0005068!2.53e-11!52;UBERON:0006241!2.53e-11!52;UBERON:0007135!2.53e-11!52;UBERON:0000955!5.89e-11!50;UBERON:0006238!5.89e-11!50;UBERON:0002346!5.89e-11!71;UBERON:0003075!5.89e-11!71;UBERON:0007284!5.89e-11!71;UBERON:0000033!6.58e-11!63;UBERON:0000153!7.62e-11!94;UBERON:0002616!1.72e-10!49;UBERON:0002791!9.11e-10!29;UBERON:0003528!9.11e-10!29;UBERON:0001893!9.11e-10!29;UBERON:0003056!3.27e-09!49;UBERON:0003080!1.21e-08!40;UBERON:0002780!2.77e-08!39;UBERON:0001890!2.77e-08!39;UBERON:0006240!2.77e-08!39;UBERON:0002021!5.16e-08!10;UBERON:0000411!5.16e-08!10;UBERON:0001950!5.16e-08!10;UBERON:0000956!8.90e-08!21;UBERON:0001869!8.90e-08!21;UBERON:0000203!8.90e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.04e-14,95;UBERON:0000924,1.04e-14,95;UBERON:0006601,1.04e-14,95;UBERON:0001017,1.93e-14,73;UBERON:0001016,5.01e-14,75;UBERON:0002346,2.15e-13,64;UBERON:0003075,2.15e-13,64;UBERON:0007284,2.15e-13,64;UBERON:0010371,8.93e-13,73;UBERON:0000073,1.70e-12,54;UBERON:0002020,8.08e-12,34;UBERON:0001049,2.53e-11,52;UBERON:0005068,2.53e-11,52;UBERON:0006241,2.53e-11,52;UBERON:0007135,2.53e-11,52;UBERON:0003528,9.11e-10,29;UBERON:0002791,9.11e-10,29;UBERON:0001893,9.11e-10,29;UBERON:0000955,1.97e-09,47;UBERON:0006238,1.97e-09,47;UBERON:0003056,3.27e-09,49;UBERON:0002616,5.48e-09,46;UBERON:0003080,1.21e-08,40;UBERON:0010314,1.79e-08,92;UBERON:0002780,2.77e-08,39;UBERON:0001890,2.77e-08,39;UBERON:0006240,2.77e-08,39;UBERON:0002021,5.16e-08,10;UBERON:0000411,5.16e-08,10;UBERON:0001950,5.16e-08,10;UBERON:0000956,8.90e-08,21;UBERON:0001869,8.90e-08,21;UBERON:0000203,8.90e-08,21|phase1_expression=5.92550734287738,1.74487703819681,5.0049916332849,3.32710632437513,6.01074875935617,4.02910252588535,3.73780224952841,4.64843964389675,12.5301962714983,15.4482587372516,10.4442960617558,8.61539317149633,5.13602189793617,3.84649770643589,2.6648780945253,2.22722794128809,0,2.20823515750766,2.19383093769182,1.27316895539409,10.5453679787327,2.48227378002213,1.56719873483361,2.3998863419011,2.75291137280604,2.8711598205751,3.4460959692726,1.72376986148711,1.52018735565099,2.01624103807945,4.21287970245079,1.90509202037889,2.46025915033828,0,2.3108129580102,1.66234645358492,2.04169356262369,6.27797446105362,4.6880120671428,2.61761871986899,6.47054636834116,4.09827290975067,6.79714494243615,3.77690453926732,3.4468156614635,5.13930906052708,2.34717403304412,3.48840250208714,4.39372365468944,2.91644848611425,5.5994568650145,1.43752564364972,6.37573903019398,10.8804321301702,4.7053131879945,4.3734104126111,4.01146815914259,2.06268836910977,5.26022798234954,4.23192783417626,1.90149421051854,6.43804610931351,2.66788438833342,6.74924787961049,5.93319817540185,4.2628806896766,4.79360176829448,3.45796474789399,8.60623782160365,7.1553147315796,8.41299845405528,13.7112472513826,10.1599528837742,8.94182834269164,5.17565543498476,4.5960939330501,17.6185409599022,14.300981865541,18.5863905240055,5.40733779693795,6.03818447775904,5.2091337055676,13.6799669510677,11.2552522006336,16.6550090076723,10.0173719061047,12.6710795911202,8.57437450796383,5.45228591998925,4.08086424576642,2.89864488701678,7.74381489283248,2.719885334831,1.07940638327563,9.09686984426737,7.6164570806547,9.40977614882737,6.47635225796619,7.01422212427746,3.88673531961374,3.09855523508697,5.13305909657271,20.3844191765317,7.11066703153331,0.649473123033642,1.77351905832569,0.505524445014783,5.36664234679582,4.91981978929626,2.82040064223167,3.64319186208885,3.04465478312141,4.84292544237723,3.76806601381556,6.23220147819235,4.14699751387929,7.66304399976559,4.48258006451726,5.30766331169925,8.25010934731787,10.3795513676385,8.24287930329878,5.59175283654366,8.19786231632332,10.8912287542997,1.53274233125155,2.51611761462433,2.39961092397363,2.41433431438823,10.1857634795279,16.4700217014706,13.9476330845279,22.5971616249959,25.0601148183724,16.8308316093244,18.1710214635889,6.31404055871961,6.46916247172484,1.26361379216837,9.25944165900485,3.90361328888111,4.82794419310293,6.66229880279792,6.0281927134286,7.14383241088942,6.91814089538189,8.15205003669641,7.24369438069244,3.88022387279116,4.53854592402766,5.10258260075452,8.54863356467542,2.7804724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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=108934 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q942 | |||
|association_with_transcript=0bp_to_ENSMUST00000165561,NM_001135577,uc007qfc.2_5end | |||
|cluster_id=chr13:41345210..41345232,+ | |||
|description=CAGE_peak_1_at_BC024659_5end | |||
|id=chr13:41345210..41345232,+ | |||
|ontology_enrichment_celltype=CL:0000540!2.06e-08!33;CL:0000047!2.06e-08!33;CL:0000031!2.06e-08!33;CL:0000404!2.06e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.06e-08,33;CL:0000047,2.06e-08,33;CL:0000031,2.06e-08,33;CL:0000404,2.06e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.93e-14!73;UBERON:0005743!1.93e-14!73;UBERON:0000073!5.01e-14!75;UBERON:0001016!5.01e-14!75;UBERON:0004121!1.12e-12!102;UBERON:0000924!1.12e-12!102;UBERON:0006601!1.12e-12!102;UBERON:0007811!5.01e-12!86;UBERON:0002020!8.09e-12!34;UBERON:0001049!2.53e-11!52;UBERON:0005068!2.53e-11!52;UBERON:0006241!2.53e-11!52;UBERON:0007135!2.53e-11!52;UBERON:0000955!5.89e-11!50;UBERON:0006238!5.89e-11!50;UBERON:0002346!5.89e-11!71;UBERON:0003075!5.89e-11!71;UBERON:0007284!5.89e-11!71;UBERON:0000033!6.58e-11!63;UBERON:0000153!7.62e-11!94;UBERON:0002616!1.72e-10!49;UBERON:0002791!9.11e-10!29;UBERON:0003528!9.11e-10!29;UBERON:0001893!9.11e-10!29;UBERON:0003056!3.27e-09!49;UBERON:0003080!1.21e-08!40;UBERON:0002780!2.77e-08!39;UBERON:0001890!2.77e-08!39;UBERON:0006240!2.77e-08!39;UBERON:0002021!5.16e-08!10;UBERON:0000411!5.16e-08!10;UBERON:0001950!5.16e-08!10;UBERON:0000956!8.90e-08!21;UBERON:0001869!8.90e-08!21;UBERON:0000203!8.90e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.04e-14,95;UBERON:0000924,1.04e-14,95;UBERON:0006601,1.04e-14,95;UBERON:0001017,1.93e-14,73;UBERON:0001016,5.01e-14,75;UBERON:0002346,2.15e-13,64;UBERON:0003075,2.15e-13,64;UBERON:0007284,2.15e-13,64;UBERON:0010371,8.93e-13,73;UBERON:0000073,1.70e-12,54;UBERON:0002020,8.08e-12,34;UBERON:0001049,2.53e-11,52;UBERON:0005068,2.53e-11,52;UBERON:0006241,2.53e-11,52;UBERON:0007135,2.53e-11,52;UBERON:0003528,9.11e-10,29;UBERON:0002791,9.11e-10,29;UBERON:0001893,9.11e-10,29;UBERON:0000955,1.97e-09,47;UBERON:0006238,1.97e-09,47;UBERON:0003056,3.27e-09,49;UBERON:0002616,5.48e-09,46;UBERON:0003080,1.21e-08,40;UBERON:0010314,1.79e-08,92;UBERON:0002780,2.77e-08,39;UBERON:0001890,2.77e-08,39;UBERON:0006240,2.77e-08,39;UBERON:0002021,5.16e-08,10;UBERON:0000411,5.16e-08,10;UBERON:0001950,5.16e-08,10;UBERON:0000956,8.90e-08,21;UBERON:0001869,8.90e-08,21;UBERON:0000203,8.90e-08,21 | |||
|phase1_expression=5.92550734287738,1.74487703819681,5.0049916332849,3.32710632437513,6.01074875935617,4.02910252588535,3.73780224952841,4.64843964389675,12.5301962714983,15.4482587372516,10.4442960617558,8.61539317149633,5.13602189793617,3.84649770643589,2.6648780945253,2.22722794128809,0,2.20823515750766,2.19383093769182,1.27316895539409,10.5453679787327,2.48227378002213,1.56719873483361,2.3998863419011,2.75291137280604,2.8711598205751,3.4460959692726,1.72376986148711,1.52018735565099,2.01624103807945,4.21287970245079,1.90509202037889,2.46025915033828,0,2.3108129580102,1.66234645358492,2.04169356262369,6.27797446105362,4.6880120671428,2.61761871986899,6.47054636834116,4.09827290975067,6.79714494243615,3.77690453926732,3.4468156614635,5.13930906052708,2.34717403304412,3.48840250208714,4.39372365468944,2.91644848611425,5.5994568650145,1.43752564364972,6.37573903019398,10.8804321301702,4.7053131879945,4.3734104126111,4.01146815914259,2.06268836910977,5.26022798234954,4.23192783417626,1.90149421051854,6.43804610931351,2.66788438833342,6.74924787961049,5.93319817540185,4.2628806896766,4.79360176829448,3.45796474789399,8.60623782160365,7.1553147315796,8.41299845405528,13.7112472513826,10.1599528837742,8.94182834269164,5.17565543498476,4.5960939330501,17.6185409599022,14.300981865541,18.5863905240055,5.40733779693795,6.03818447775904,5.2091337055676,13.6799669510677,11.2552522006336,16.6550090076723,10.0173719061047,12.6710795911202,8.57437450796383,5.45228591998925,4.08086424576642,2.89864488701678,7.74381489283248,2.719885334831,1.07940638327563,9.09686984426737,7.6164570806547,9.40977614882737,6.47635225796619,7.01422212427746,3.88673531961374,3.09855523508697,5.13305909657271,20.3844191765317,7.11066703153331,0.649473123033642,1.77351905832569,0.505524445014783,5.36664234679582,4.91981978929626,2.82040064223167,3.64319186208885,3.04465478312141,4.84292544237723,3.76806601381556,6.23220147819235,4.14699751387929,7.66304399976559,4.48258006451726,5.30766331169925,8.25010934731787,10.3795513676385,8.24287930329878,5.59175283654366,8.19786231632332,10.8912287542997,1.53274233125155,2.51611761462433,2.39961092397363,2.41433431438823,10.1857634795279,16.4700217014706,13.9476330845279,22.5971616249959,25.0601148183724,16.8308316093244,18.1710214635889,6.31404055871961,6.46916247172484,1.26361379216837,9.25944165900485,3.90361328888111,4.82794419310293,6.66229880279792,6.0281927134286,7.14383241088942,6.91814089538189,8.15205003669641,7.24369438069244,3.88022387279116,4.53854592402766,5.10258260075452,8.54863356467542,2.78047249225598,4.87553033131033,4.52720700097476,5.17489093728082,0.702213187313235,1.54408744268829,1.98914449576915,3.52113813310353,4.22146907965973,3.6012412292203,4.49814997611899,3.93528463494808,4.01094493507183,4.18561100550734,3.48755421819505,5.48797109125697,4.44311594766397,6.23836363500562,7.1340552400353,6.57899943413995,7.90380415047782,8.99183005694491,16.1923260394378,9.98174740079059,1.65209391491899,2.3800550999719,2.77274725695804,2.09013004674395,4.76809606891745,4.23535401709019,4.22518283305254,5.1360919050391,3.32170343081158,2.63518327558417,3.2673577144035,2.78539060857611,4.28920991662064,3.59527763461689,1.51296634912286,4.77939055810481,3.22435431620239,3.19895835307241,0,3.46207257337034,4.07300223052014,4.34842083319975,3.66771915320692,2.65698266363284,2.19798218977925,3.08492909804501,8.00422093135302,3.83743743147016,2.55526693647164,3.14806957338795,3.24576194221605,4.58236603529592,3.56476192493988,6.04161888646702,8.91743747262695,3.84385978463314,12.9391385874619,5.95425516269605,4.05648975048929,1.76805214562978,4.66433275156972,11.0962009913574,2.77129785249907,3.7898282354097,2.77040459951444,4.07388205860452,3.98973422090454,7.87279409976534,7.14130922658041,9.56154874503214,6.14777062014145,5.97954662051692,7.17546458958692,4.09658286789345,4.14443956478149,4.77341893318988,9.04747703635634,3.26343410291226,3.93411418415229,3.03530420935206,12.0412942490844,15.8235776899474,2.62295912602681,27.771801992481,17.0374438484779,12.4940398174924,12.4945570685023,10.5146271099123,9.13474563737816,13.587673477864,9.71545684019746,11.6902343164525,11.0680577825027,13.4954952897159,6.10342366395555,3.91744328067962,5.04949573996086,4.45419332025846,13.2745138339963,2.18502572539483,3.93020624054176,6.03536255218874,6.20133975049623,5.22639751504677,5.16856586336442,5.08947221268508,5.34746067577082,6.0046984007805,4.21674434299995,7.21948802737308,6.12791290356818,3.24109969256358,3.49268446213437,3.85806663056866,5.67488747655275,3.92411398724555,5.26556865926787,6.08929898229199,3.98941903708308,6.77862626764225,1.32317038832977,8.73897140589844,11.3025098687134,7.53911561601948,6.56547892017251,4.92422699235184,3.78925087618806,10.9400928186201,3.58828849675491,4.54051109519089,2.22233432843654,2.82552685507037,3.2806614653046,2.28778173206523,1.86976272993241,1.39951452323658,1.24379976423981,0.954670618015114,6.16855187483214,4.87966721104437,3.67218158794124,5.8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| |||
|short_description=p1@BC024659 | |||
}} |
Latest revision as of 14:36, 1 October 2015
Short description: | p1@BC024659 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BC024659_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000165561, NM_001135577, uc007qfc.2_5end |
EntrezGene: | BC024659 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.06e-08 | 33 |
neuronal stem cell | 2.06e-08 | 33 |
neuroblast | 2.06e-08 | 33 |
electrically signaling cell | 2.06e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.04e-14 | 95 |
ectoderm | 1.04e-14 | 95 |
presumptive ectoderm | 1.04e-14 | 95 |
central nervous system | 1.93e-14 | 73 |
nervous system | 5.01e-14 | 75 |
neurectoderm | 2.15e-13 | 64 |
neural plate | 2.15e-13 | 64 |
presumptive neural plate | 2.15e-13 | 64 |
ecto-epithelium | 8.93e-13 | 73 |
regional part of nervous system | 1.70e-12 | 54 |
gray matter | 8.08e-12 | 34 |
neural tube | 2.53e-11 | 52 |
neural rod | 2.53e-11 | 52 |
future spinal cord | 2.53e-11 | 52 |
neural keel | 2.53e-11 | 52 |
brain grey matter | 9.11e-10 | 29 |
regional part of telencephalon | 9.11e-10 | 29 |
telencephalon | 9.11e-10 | 29 |
brain | 1.97e-09 | 47 |
future brain | 1.97e-09 | 47 |
pre-chordal neural plate | 3.27e-09 | 49 |
regional part of brain | 5.48e-09 | 46 |
anterior neural tube | 1.21e-08 | 40 |
structure with developmental contribution from neural crest | 1.79e-08 | 92 |
regional part of forebrain | 2.77e-08 | 39 |
forebrain | 2.77e-08 | 39 |
future forebrain | 2.77e-08 | 39 |
occipital lobe | 5.16e-08 | 10 |
visual cortex | 5.16e-08 | 10 |
neocortex | 5.16e-08 | 10 |
cerebral cortex | 8.90e-08 | 21 |
cerebral hemisphere | 8.90e-08 | 21 |
pallium | 8.90e-08 | 21 |