FFCP PHASE1:Mm9::chr6:87837882..87838010,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=54161 | |EntrezGene=54161 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q7TNQ1,E9Q5P4,Q9QZE5 | |UniProt=Q7TNQ1,E9Q5P4,Q9QZE5 | ||
|association_with_transcript=0bp_to_ENSMUST00000049966,ENSMUST00000137717,ENSMUST00000166521,NM_017477,NM_201244,uc009cuf.1,uc009cug.1_5end | |association_with_transcript=0bp_to_ENSMUST00000049966,ENSMUST00000137717,ENSMUST00000166521,NM_017477,NM_201244,uc009cuf.1,uc009cug.1_5end | ||
|cluster_id=chr6:87837882..87838010,+ | |||
|description=CAGE_peak_1_at_Copg_5end | |description=CAGE_peak_1_at_Copg_5end | ||
|id=chr6:87837882..87838010,+ | |id=chr6:87837882..87838010,+ | ||
|ontology_enrichment_celltype=CL:0000117!6.82e-07!23;CL:0000337!6.82e-07!23 | |ontology_enrichment_celltype=CL:0000117!6.82e-07!23;CL:0000337!6.82e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.82e-07,23;CL:0000337,6.82e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.22e-16!52;UBERON:0005068!7.22e-16!52;UBERON:0006241!7.22e-16!52;UBERON:0007135!7.22e-16!52;UBERON:0000955!4.93e-15!50;UBERON:0006238!4.93e-15!50;UBERON:0001017!9.05e-15!73;UBERON:0005743!9.05e-15!73;UBERON:0002616!1.56e-14!49;UBERON:0000073!2.95e-14!75;UBERON:0001016!2.95e-14!75;UBERON:0003080!8.28e-12!40;UBERON:0002020!1.15e-11!34;UBERON:0002346!1.56e-11!71;UBERON:0003075!1.56e-11!71;UBERON:0007284!1.56e-11!71;UBERON:0002780!3.42e-11!39;UBERON:0001890!3.42e-11!39;UBERON:0006240!3.42e-11!39;UBERON:0000033!5.12e-11!63;UBERON:0004121!2.06e-09!102;UBERON:0000924!2.06e-09!102;UBERON:0006601!2.06e-09!102;UBERON:0002791!3.71e-09!29;UBERON:0003528!3.71e-09!29;UBERON:0001893!3.71e-09!29;UBERON:0003056!1.24e-08!49;UBERON:0002021!2.75e-07!10;UBERON:0000411!2.75e-07!10;UBERON:0001950!2.75e-07!10 | |ontology_enrichment_uberon=UBERON:0001049!7.22e-16!52;UBERON:0005068!7.22e-16!52;UBERON:0006241!7.22e-16!52;UBERON:0007135!7.22e-16!52;UBERON:0000955!4.93e-15!50;UBERON:0006238!4.93e-15!50;UBERON:0001017!9.05e-15!73;UBERON:0005743!9.05e-15!73;UBERON:0002616!1.56e-14!49;UBERON:0000073!2.95e-14!75;UBERON:0001016!2.95e-14!75;UBERON:0003080!8.28e-12!40;UBERON:0002020!1.15e-11!34;UBERON:0002346!1.56e-11!71;UBERON:0003075!1.56e-11!71;UBERON:0007284!1.56e-11!71;UBERON:0002780!3.42e-11!39;UBERON:0001890!3.42e-11!39;UBERON:0006240!3.42e-11!39;UBERON:0000033!5.12e-11!63;UBERON:0004121!2.06e-09!102;UBERON:0000924!2.06e-09!102;UBERON:0006601!2.06e-09!102;UBERON:0002791!3.71e-09!29;UBERON:0003528!3.71e-09!29;UBERON:0001893!3.71e-09!29;UBERON:0003056!1.24e-08!49;UBERON:0002021!2.75e-07!10;UBERON:0000411!2.75e-07!10;UBERON:0001950!2.75e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.23e-17,54;UBERON:0001049,7.22e-16,52;UBERON:0005068,7.22e-16,52;UBERON:0006241,7.22e-16,52;UBERON:0007135,7.22e-16,52;UBERON:0001017,9.05e-15,73;UBERON:0001016,2.95e-14,75;UBERON:0000955,4.10e-13,47;UBERON:0006238,4.10e-13,47;UBERON:0002616,1.24e-12,46;UBERON:0002346,3.15e-12,64;UBERON:0003075,3.15e-12,64;UBERON:0007284,3.15e-12,64;UBERON:0003080,8.28e-12,40;UBERON:0002020,1.15e-11,34;UBERON:0002780,3.42e-11,39;UBERON:0001890,3.42e-11,39;UBERON:0006240,3.42e-11,39;UBERON:0010371,9.16e-10,73;UBERON:0004121,1.12e-09,95;UBERON:0000924,1.12e-09,95;UBERON:0006601,1.12e-09,95;UBERON:0003528,3.71e-09,29;UBERON:0002791,3.71e-09,29;UBERON:0001893,3.71e-09,29;UBERON:0010314,9.29e-09,92;UBERON:0003056,1.24e-08,49;UBERON:0002021,2.75e-07,10;UBERON:0000411,2.75e-07,10;UBERON:0001950,2.75e-07,10 | |||
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|phase1_expression=84.718740118436,154.247130176598,120.119799198838,87.4121570676739,78.1397338716302,64.1298818703419,85.7358390985579,65.4655249848792,68.5641076878617,72.325938633496,60.7823787200543,54.8034732297961,68.1378905126199,67.575971069885,50.2995740341651,38.4703008040669,44.7719602002014,50.3162153746389,51.0065693013348,44.9853030905912,87.5945888556019,48.453984186032,70.2627432783736,118.874370135501,108.051771382637,111.975233002429,93.4753531665192,112.045040996662,104.512880701006,86.6983646374162,96.4527721350575,59.6928833052053,48.590118219181,63.3926724061755,47.371665639209,39.5638455953212,38.179669621063,38.9234416585324,35.160090503571,41.8818995179039,36.4703522579229,35.5183652178392,36.8987868303677,105.123843009607,105.127877674637,85.1656930030202,52.4202200713186,72.6023770746887,79.5263981498788,98.1870990325131,107.509571808278,76.1888591134349,59.3950425444387,81.2405599052706,62.1773528413558,176.737232556696,112.034575016054,117.057564946979,95.8980024474493,132.247744818008,96.3423733329392,104.025271345224,114.719028698337,31.496490104849,35.5991890524111,27.7087244828979,43.1424159146503,38.806048837477,74.1380728005615,82.0836105056679,78.4512105840655,181.959677065223,174.044410269871,73.0045163321126,79.8392773581909,89.164222301172,255.468843918582,249.501058618457,256.676517071183,107.091665636917,124.057244724867,109.39180781692,287.00012297342,229.044382282894,217.584704834178,188.267666117674,158.317309048602,125.633226486253,75.0446575931854,80.1058537131926,65.2195099578775,61.0900952656784,70.7170187056061,78.2569627874835,100.715344704389,48.8349306936096,66.7110995625821,105.496369675818,93.5229616570328,113.068663843309,79.0131584947178,111.644035350457,66.2493623237279,35.5533351576666,104.565172808416,96.0233890150624,119.303769023489,67.7110406734026,45.8320054055494,81.4947343465888,86.0487220760034,89.5128506237695,89.4788129353507,81.2395032578636,85.251812673386,64.8439611261125,87.0126286424996,52.0557684911682,44.2305275974937,95.9277420188136,60.2897345396874,63.0337829075789,61.5092812019803,135.557509016346,133.626998946984,110.61290490532,46.9675288063207,34.7943583976176,53.8777762789794,255.093458906413,199.470262828921,108.314051521289,205.286522147079,175.676519185937,217.13850656474,183.170386003498,110.495709777593,78.1275775431384,125.350488183103,46.9285338626837,77.8120248916968,68.5108271211749,79.0472749845483,89.2172521587433,72.8670905910721,81.6084398214493,72.5251348092301,78.1284179631827,84.9337892155398,88.6907515987072,93.6059980552208,106.967517424657,107.326238201081,115.619719285359,101.862157521932,88.1721802005925,56.1770549850588,60.7341060790728,54.5593918839538,88.4427048726593,96.3902106522305,100.294568233785,104.877917864248,80.2798065529408,82.2243711689726,79.2940751598891,71.3607247722987,67.3736025458568,76.026650660028,70.5920095540109,48.884492156151,46.0529960389797,58.6198807827105,45.3617695410057,182.531675353662,95.0838618384588,136.462957372309,153.645779231519,96.4062892419257,87.7854619632458,86.3411990858025,100.035028213178,102.73865625633,115.466955050323,122.428497878484,127.971087820556,90.480675168097,99.2792795485343,106.645355654159,113.251245490432,118.227513281458,105.744016098069,80.0398542022005,81.9161835411756,75.5141829009639,70.0560567787881,68.8531329445071,73.9231541643958,71.2043408019137,66.8673970347598,70.0214326172532,66.1408798620851,71.1486305009157,60.7316184806582,72.1371512065455,69.9321169516895,63.9009382373784,66.0825417721622,68.7489799809833,71.6363382252518,66.4754429777645,89.5070206993146,57.5072826109418,84.8481360684188,84.5622094140459,74.7633478723451,85.751963663474,52.586343828607,71.1299782141428,86.0291009438001,94.356721359933,86.2305035737956,80.4987551629562,75.8803346211425,74.7457032382083,70.4432468766654,72.9850717211664,89.0288052388075,82.4381153959208,66.0369158304424,72.3550074018103,66.6832160060768,66.3481649332798,70.1638332126135,105.237554426074,105.959710581017,266.032327609771,238.642993901726,125.24629826778,57.8158423298014,85.1872192423893,92.5339823983033,79.0603869679372,70.7347641939554,79.9847239955795,69.9199031048416,81.7717617383286,80.9548726414334,79.8481311451978,147.486484237609,91.1255347037085,117.167167213054,106.853845335946,92.8781792335375,71.6823747035799,88.6149321965682,110.650421849099,132.40076598864,149.718059690552,136.808640835048,85.5397650386812,91.9740335578089,106.949213515416,112.50908582515,119.123027689749,101.072832383223,175.666836568955,74.905415117025,90.2923612803626,85.7348140126369,91.5075605594132,94.1787356938933,113.538824215463,147.665500320581,118.039869156046,99.5610733059955,104.530460678052,30.1741842882908,60.3876955842687,75.0292786106259,62.073618881631,51.8685243194394,112.803083775752,245.132249257894,52.2864895241429,80.9036522415832,56.4843308477621,51.4245887622806,48.1163681578009,41.1800711771741,56.43283875796,49.5428141225749,48.7845907529616,62.0535901709824,83.8290382990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| ||
|short_description=p1@Copg | |short_description=p1@Copg | ||
}} | }} |
Latest revision as of 21:13, 1 October 2015
Short description: | p1@Copg |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Copg_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000049966, ENSMUST00000137717, ENSMUST00000166521, NM_017477, NM_201244, uc009cuf.1, uc009cug.1_5end |
EntrezGene: | Copg |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.82e-07 | 23 |
neuroblast (sensu Vertebrata) | 6.82e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.23e-17 | 54 |
neural tube | 7.22e-16 | 52 |
neural rod | 7.22e-16 | 52 |
future spinal cord | 7.22e-16 | 52 |
neural keel | 7.22e-16 | 52 |
central nervous system | 9.05e-15 | 73 |
nervous system | 2.95e-14 | 75 |
brain | 4.10e-13 | 47 |
future brain | 4.10e-13 | 47 |
regional part of brain | 1.24e-12 | 46 |
neurectoderm | 3.15e-12 | 64 |
neural plate | 3.15e-12 | 64 |
presumptive neural plate | 3.15e-12 | 64 |
anterior neural tube | 8.28e-12 | 40 |
gray matter | 1.15e-11 | 34 |
regional part of forebrain | 3.42e-11 | 39 |
forebrain | 3.42e-11 | 39 |
future forebrain | 3.42e-11 | 39 |
ecto-epithelium | 9.16e-10 | 73 |
ectoderm-derived structure | 1.12e-09 | 95 |
ectoderm | 1.12e-09 | 95 |
presumptive ectoderm | 1.12e-09 | 95 |
brain grey matter | 3.71e-09 | 29 |
regional part of telencephalon | 3.71e-09 | 29 |
telencephalon | 3.71e-09 | 29 |
structure with developmental contribution from neural crest | 9.29e-09 | 92 |
pre-chordal neural plate | 1.24e-08 | 49 |
occipital lobe | 2.75e-07 | 10 |
visual cortex | 2.75e-07 | 10 |
neocortex | 2.75e-07 | 10 |