FF:10024-101D6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004876 | ||
|accession_numbers=CAGE;DRX008724;DRR009596;DRZ001021;DRZ002406;DRZ012371;DRZ013756 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002108,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0002204,UBERON:0005409,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010024,FF:0010048 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/small%2520intestine%252c%2520adult%252c%2520pool1.CNhs10630.10024-101D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10024-101D6 | |id=FF:10024-101D6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010024;;FF:0010048 | ||
|is_obsolete= | |||
|library_id=CNhs10630 | |||
|library_id_phase_based=2:CNhs10630 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10024 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10024 | |||
|name=small intestine, adult, pool1 | |name=small intestine, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10630,LSID657,release008,COMPLETED | |profile_hcage=CNhs10630,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -15 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -15 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.29860148595843e-259!GO:0005737;cytoplasm;2.96252850794272e-190!GO:0044444;cytoplasmic part;1.5282596396631e-140!GO:0043231;intracellular membrane-bound organelle;2.73345707346578e-109!GO:0043227;membrane-bound organelle;2.73345707346578e-109!GO:0043226;organelle;1.14152440260041e-106!GO:0043229;intracellular organelle;1.55343713578178e-106!GO:0044422;organelle part;4.47307046999262e-84!GO:0044446;intracellular organelle part;5.85683935080934e-83!GO:0005515;protein binding;1.56539060505345e-73!GO:0031090;organelle membrane;2.42209698794368e-59!GO:0005739;mitochondrion;1.1577947157704e-51!GO:0044237;cellular metabolic process;1.15429859655849e-47!GO:0032991;macromolecular complex;2.24599555733044e-47!GO:0044238;primary metabolic process;7.91210377173506e-47!GO:0030529;ribonucleoprotein complex;1.21815676304942e-39!GO:0033036;macromolecule localization;1.16583570662528e-38!GO:0043233;organelle lumen;2.86634381058893e-38!GO:0031974;membrane-enclosed lumen;2.86634381058893e-38!GO:0019538;protein metabolic process;1.34580571330349e-37!GO:0015031;protein transport;4.43653976150685e-37!GO:0044429;mitochondrial part;5.8584044667391e-37!GO:0008104;protein localization;9.52914777480987e-37!GO:0045184;establishment of protein localization;2.37964436707207e-36!GO:0003723;RNA binding;6.25248613782852e-36!GO:0043170;macromolecule metabolic process;9.59745948991194e-35!GO:0031967;organelle envelope;4.51967008572299e-34!GO:0031975;envelope;7.80165475447239e-34!GO:0044260;cellular macromolecule metabolic process;1.1077312144831e-32!GO:0005829;cytosol;2.6054173306179e-32!GO:0044267;cellular protein metabolic process;4.13979597865023e-32!GO:0044428;nuclear part;1.19605560593014e-30!GO:0005783;endoplasmic reticulum;1.94740975034734e-29!GO:0009058;biosynthetic process;9.60912949584067e-29!GO:0016043;cellular component organization and biogenesis;2.99226775484447e-28!GO:0019866;organelle inner membrane;2.25570180694982e-27!GO:0005740;mitochondrial envelope;3.04498131229577e-27!GO:0031966;mitochondrial membrane;8.93417784076014e-27!GO:0012505;endomembrane system;2.87885730572278e-26!GO:0009059;macromolecule biosynthetic process;1.08311727435354e-25!GO:0005743;mitochondrial inner membrane;1.46333968482957e-25!GO:0043234;protein complex;7.10369172265515e-25!GO:0046907;intracellular transport;8.52217918378653e-25!GO:0005840;ribosome;3.16433532719147e-24!GO:0006412;translation;8.07785206251509e-24!GO:0006886;intracellular protein transport;6.09191454346794e-22!GO:0016071;mRNA metabolic process;6.99938026432938e-22!GO:0065003;macromolecular complex assembly;1.18372804960163e-21!GO:0003735;structural constituent of ribosome;1.63469906056325e-21!GO:0044432;endoplasmic reticulum part;4.61894369240011e-21!GO:0044249;cellular biosynthetic process;2.81744299657889e-20!GO:0005794;Golgi apparatus;3.93429963475023e-20!GO:0008380;RNA splicing;4.21247695814234e-20!GO:0033279;ribosomal subunit;5.12589324908314e-20!GO:0031981;nuclear lumen;3.633009935538e-19!GO:0022607;cellular component assembly;6.03729042386778e-19!GO:0006119;oxidative phosphorylation;6.33096258928038e-19!GO:0006397;mRNA processing;1.50151326292774e-18!GO:0006396;RNA processing;1.91462250321556e-18!GO:0005789;endoplasmic reticulum membrane;1.31473486211218e-17!GO:0005634;nucleus;1.55725329486308e-17!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.41856558022323e-17!GO:0051641;cellular localization;2.50348707143493e-17!GO:0051649;establishment of cellular localization;4.60795736104955e-17!GO:0044248;cellular catabolic process;3.67654668467267e-16!GO:0044265;cellular macromolecule catabolic process;4.01694037661642e-16!GO:0008134;transcription factor binding;5.64247129454128e-16!GO:0048770;pigment granule;7.81712325450208e-16!GO:0042470;melanosome;7.81712325450208e-16!GO:0016192;vesicle-mediated transport;1.68786463233948e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.86814599086049e-15!GO:0005746;mitochondrial respiratory chain;7.57301768722983e-15!GO:0012501;programmed cell death;9.78089821018187e-15!GO:0006915;apoptosis;9.78089821018187e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.68259197163642e-14!GO:0044455;mitochondrial membrane part;1.75895154462222e-14!GO:0000166;nucleotide binding;2.55555096410137e-14!GO:0031980;mitochondrial lumen;2.67152793191019e-14!GO:0005759;mitochondrial matrix;2.67152793191019e-14!GO:0005681;spliceosome;4.26684063594318e-14!GO:0008219;cell death;4.6783301971123e-14!GO:0016265;death;4.6783301971123e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.21205801213897e-13!GO:0003954;NADH dehydrogenase activity;1.21205801213897e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.21205801213897e-13!GO:0009055;electron carrier activity;1.85290109054517e-13!GO:0006996;organelle organization and biogenesis;2.84229941602347e-13!GO:0005654;nucleoplasm;6.49863844214459e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;7.39830741772657e-13!GO:0044257;cellular protein catabolic process;8.83969550944864e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.21028658631514e-12!GO:0019941;modification-dependent protein catabolic process;1.32253514213177e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.32253514213177e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.54738244631654e-12!GO:0048193;Golgi vesicle transport;1.84922358220108e-12!GO:0009057;macromolecule catabolic process;2.22975438660067e-12!GO:0044255;cellular lipid metabolic process;3.44437855369059e-12!GO:0051186;cofactor metabolic process;3.77360360389729e-12!GO:0015935;small ribosomal subunit;4.87865906529932e-12!GO:0044445;cytosolic part;8.60361391797397e-12!GO:0022618;protein-RNA complex assembly;1.13105329029132e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.28004514363444e-11!GO:0042773;ATP synthesis coupled electron transport;1.28004514363444e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.28004514363444e-11!GO:0045271;respiratory chain complex I;1.28004514363444e-11!GO:0005747;mitochondrial respiratory chain complex I;1.28004514363444e-11!GO:0044451;nucleoplasm part;1.31148516236899e-11!GO:0006629;lipid metabolic process;1.56021490146704e-11!GO:0006732;coenzyme metabolic process;2.18155637373713e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.08766249351849e-11!GO:0043285;biopolymer catabolic process;3.62746425297263e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.96318122783877e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.21699766706444e-11!GO:0009056;catabolic process;5.68136374038699e-11!GO:0031982;vesicle;6.88894047378815e-11!GO:0043412;biopolymer modification;7.29498545462304e-11!GO:0005768;endosome;1.043913949558e-10!GO:0016874;ligase activity;1.16099903184565e-10!GO:0031410;cytoplasmic vesicle;1.35391785981276e-10!GO:0016462;pyrophosphatase activity;1.91415447802471e-10!GO:0006464;protein modification process;2.0785699385168e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.10531941500187e-10!GO:0043283;biopolymer metabolic process;2.3402723606222e-10!GO:0016491;oxidoreductase activity;2.70111215371481e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;2.71954464348572e-10!GO:0006461;protein complex assembly;3.0179328917363e-10!GO:0017076;purine nucleotide binding;3.16583339674546e-10!GO:0006605;protein targeting;4.10605316014804e-10!GO:0030163;protein catabolic process;5.43087686203834e-10!GO:0006091;generation of precursor metabolites and energy;6.9959659487873e-10!GO:0006512;ubiquitin cycle;7.05495278935557e-10!GO:0032553;ribonucleotide binding;1.00733686839834e-09!GO:0032555;purine ribonucleotide binding;1.00733686839834e-09!GO:0003712;transcription cofactor activity;1.00733686839834e-09!GO:0048523;negative regulation of cellular process;1.21932662907028e-09!GO:0006457;protein folding;1.55774304133812e-09!GO:0045333;cellular respiration;1.58467361307552e-09!GO:0009060;aerobic respiration;1.80265581116213e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.13243744231145e-09!GO:0006793;phosphorus metabolic process;2.82177585506051e-09!GO:0006796;phosphate metabolic process;2.82177585506051e-09!GO:0005773;vacuole;2.90470756024925e-09!GO:0017111;nucleoside-triphosphatase activity;3.70864219270865e-09!GO:0015934;large ribosomal subunit;4.39573329243469e-09!GO:0031988;membrane-bound vesicle;4.80432068647369e-09!GO:0042981;regulation of apoptosis;4.93229596590228e-09!GO:0008135;translation factor activity, nucleic acid binding;5.22754962055151e-09!GO:0016023;cytoplasmic membrane-bound vesicle;9.0627850549689e-09!GO:0006066;alcohol metabolic process;9.61371035036653e-09!GO:0005793;ER-Golgi intermediate compartment;1.07316165582895e-08!GO:0043067;regulation of programmed cell death;1.07316165582895e-08!GO:0006099;tricarboxylic acid cycle;1.56519648872314e-08!GO:0046356;acetyl-CoA catabolic process;1.56519648872314e-08!GO:0016604;nuclear body;2.22525741093955e-08!GO:0044431;Golgi apparatus part;3.07850876703928e-08!GO:0006366;transcription from RNA polymerase II promoter;3.9944044536387e-08!GO:0003743;translation initiation factor activity;4.22306538093023e-08!GO:0008565;protein transporter activity;4.52353144087875e-08!GO:0006446;regulation of translational initiation;4.71449590068606e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.87899410960857e-08!GO:0048519;negative regulation of biological process;5.289534339371e-08!GO:0000323;lytic vacuole;5.29943015653213e-08!GO:0005764;lysosome;5.29943015653213e-08!GO:0016310;phosphorylation;6.23393529163221e-08!GO:0006084;acetyl-CoA metabolic process;6.32938171420921e-08!GO:0043687;post-translational protein modification;6.8171092370089e-08!GO:0005761;mitochondrial ribosome;7.10073055499811e-08!GO:0000313;organellar ribosome;7.10073055499811e-08!GO:0030036;actin cytoskeleton organization and biogenesis;9.44639633732056e-08!GO:0043228;non-membrane-bound organelle;1.17845487528918e-07!GO:0043232;intracellular non-membrane-bound organelle;1.17845487528918e-07!GO:0044440;endosomal part;1.19227514602607e-07!GO:0010008;endosome membrane;1.19227514602607e-07!GO:0006413;translational initiation;1.20211131923435e-07!GO:0005770;late endosome;1.45794840738062e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.46916326336691e-07!GO:0016607;nuclear speck;2.32479953881718e-07!GO:0051082;unfolded protein binding;2.4420517262076e-07!GO:0010467;gene expression;2.58422665108185e-07!GO:0015980;energy derivation by oxidation of organic compounds;2.89333644128775e-07!GO:0005635;nuclear envelope;3.21691931454537e-07!GO:0008639;small protein conjugating enzyme activity;4.43523645075508e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;4.63271939039491e-07!GO:0000375;RNA splicing, via transesterification reactions;4.63271939039491e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.63271939039491e-07!GO:0019829;cation-transporting ATPase activity;4.97383701938689e-07!GO:0030554;adenyl nucleotide binding;5.08003403938929e-07!GO:0007264;small GTPase mediated signal transduction;5.46823984187576e-07!GO:0009109;coenzyme catabolic process;6.25997465071964e-07!GO:0004842;ubiquitin-protein ligase activity;6.37584017890117e-07!GO:0016787;hydrolase activity;8.9535452115918e-07!GO:0006913;nucleocytoplasmic transport;1.00766490648697e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.15932227220026e-06!GO:0019787;small conjugating protein ligase activity;1.17672528368356e-06!GO:0015986;ATP synthesis coupled proton transport;1.18488667184584e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.18488667184584e-06!GO:0051187;cofactor catabolic process;1.20811181319164e-06!GO:0005524;ATP binding;1.23408152294275e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.24067779836928e-06!GO:0032559;adenyl ribonucleotide binding;1.24067779836928e-06!GO:0044262;cellular carbohydrate metabolic process;1.52648434062076e-06!GO:0016740;transferase activity;1.62859488307589e-06!GO:0051169;nuclear transport;1.92654998357326e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.03564826518954e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.08212710318371e-06!GO:0043069;negative regulation of programmed cell death;2.18384551054876e-06!GO:0007243;protein kinase cascade;2.33154390931457e-06!GO:0005975;carbohydrate metabolic process;2.60281105051537e-06!GO:0000139;Golgi membrane;2.63791541013981e-06!GO:0043066;negative regulation of apoptosis;2.84337029668249e-06!GO:0030029;actin filament-based process;2.91494873979425e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.079846750047e-06!GO:0048475;coated membrane;3.55213391378671e-06!GO:0030117;membrane coat;3.55213391378671e-06!GO:0051246;regulation of protein metabolic process;4.02952353397696e-06!GO:0031252;leading edge;4.11628180286004e-06!GO:0006082;organic acid metabolic process;4.24715258843066e-06!GO:0008092;cytoskeletal protein binding;4.34060765802004e-06!GO:0045259;proton-transporting ATP synthase complex;4.80236736218954e-06!GO:0016564;transcription repressor activity;4.89083838682463e-06!GO:0048522;positive regulation of cellular process;5.50729643921155e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.81769694342411e-06!GO:0030120;vesicle coat;6.44724811936907e-06!GO:0030662;coated vesicle membrane;6.44724811936907e-06!GO:0019899;enzyme binding;7.1113387478293e-06!GO:0051188;cofactor biosynthetic process;7.89353540510908e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.89364187411566e-06!GO:0008610;lipid biosynthetic process;9.82931465115189e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.04616439643748e-05!GO:0019752;carboxylic acid metabolic process;1.07952909233522e-05!GO:0042802;identical protein binding;1.17738607462417e-05!GO:0048471;perinuclear region of cytoplasm;1.21480064395234e-05!GO:0003713;transcription coactivator activity;1.59266133790265e-05!GO:0009892;negative regulation of metabolic process;1.63113605916048e-05!GO:0031324;negative regulation of cellular metabolic process;1.81460283849418e-05!GO:0005996;monosaccharide metabolic process;1.97006500609994e-05!GO:0050662;coenzyme binding;1.98031233943826e-05!GO:0048518;positive regulation of biological process;2.04064722356296e-05!GO:0009108;coenzyme biosynthetic process;2.14120480056516e-05!GO:0019318;hexose metabolic process;2.22720180447459e-05!GO:0005730;nucleolus;2.38564719448679e-05!GO:0016881;acid-amino acid ligase activity;2.62998033909895e-05!GO:0031965;nuclear membrane;2.74418226563726e-05!GO:0016563;transcription activator activity;2.78671084474276e-05!GO:0005525;GTP binding;3.00312222566483e-05!GO:0017038;protein import;3.23742163133142e-05!GO:0004298;threonine endopeptidase activity;3.38357936074018e-05!GO:0007242;intracellular signaling cascade;3.45466809433468e-05!GO:0042623;ATPase activity, coupled;3.59849193084545e-05!GO:0006259;DNA metabolic process;3.66058002082954e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.07050135552168e-05!GO:0006754;ATP biosynthetic process;4.5155436374015e-05!GO:0006753;nucleoside phosphate metabolic process;4.5155436374015e-05!GO:0016469;proton-transporting two-sector ATPase complex;5.96440602608911e-05!GO:0016887;ATPase activity;6.41625029142126e-05!GO:0006613;cotranslational protein targeting to membrane;7.06528220716609e-05!GO:0003924;GTPase activity;7.56398975192059e-05!GO:0003779;actin binding;7.70536557918114e-05!GO:0006916;anti-apoptosis;8.27773221051432e-05!GO:0006118;electron transport;0.000104010001682266!GO:0003714;transcription corepressor activity;0.000105315818121341!GO:0007265;Ras protein signal transduction;0.000105482088730273!GO:0004177;aminopeptidase activity;0.00011240424855177!GO:0032561;guanyl ribonucleotide binding;0.000113457365049935!GO:0019001;guanyl nucleotide binding;0.000113457365049935!GO:0046034;ATP metabolic process;0.000116699576508699!GO:0008654;phospholipid biosynthetic process;0.000125814192633697!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000141858512436777!GO:0009142;nucleoside triphosphate biosynthetic process;0.000143707614964014!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000143707614964014!GO:0051287;NAD binding;0.000174377958965521!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000190565206162228!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000204977016218844!GO:0016126;sterol biosynthetic process;0.000206047926167982!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000210440049246728!GO:0016197;endosome transport;0.000212168119285758!GO:0005798;Golgi-associated vesicle;0.000219697684887638!GO:0009199;ribonucleoside triphosphate metabolic process;0.000223630845475678!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.00024743511632403!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.00024743511632403!GO:0006695;cholesterol biosynthetic process;0.00024743511632403!GO:0006950;response to stress;0.00024946428387965!GO:0030133;transport vesicle;0.000253220307619393!GO:0006643;membrane lipid metabolic process;0.00025577519721853!GO:0006612;protein targeting to membrane;0.000288631781836279!GO:0016481;negative regulation of transcription;0.000295650067305208!GO:0005791;rough endoplasmic reticulum;0.000316902907138609!GO:0005777;peroxisome;0.000344330296661499!GO:0042579;microbody;0.000344330296661499!GO:0032787;monocarboxylic acid metabolic process;0.00036273043683579!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000367985430474416!GO:0009144;purine nucleoside triphosphate metabolic process;0.000367985430474416!GO:0030867;rough endoplasmic reticulum membrane;0.000367985430474416!GO:0009141;nucleoside triphosphate metabolic process;0.000375439089894313!GO:0009150;purine ribonucleotide metabolic process;0.000403867949209016!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000419816315655937!GO:0005788;endoplasmic reticulum lumen;0.000424162917223391!GO:0044453;nuclear membrane part;0.000438124685307042!GO:0051427;hormone receptor binding;0.00045651889719256!GO:0008154;actin polymerization and/or depolymerization;0.000483694645193401!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000502361948538052!GO:0015399;primary active transmembrane transporter activity;0.000502361948538052!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000526926336857395!GO:0043566;structure-specific DNA binding;0.000540968566322172!GO:0016044;membrane organization and biogenesis;0.000543258355518112!GO:0051789;response to protein stimulus;0.000568127519487043!GO:0006986;response to unfolded protein;0.000568127519487043!GO:0051170;nuclear import;0.000579868556968907!GO:0001666;response to hypoxia;0.000587888686978852!GO:0009259;ribonucleotide metabolic process;0.000591766435811788!GO:0009152;purine ribonucleotide biosynthetic process;0.000617229976491571!GO:0006163;purine nucleotide metabolic process;0.000675714442658603!GO:0032446;protein modification by small protein conjugation;0.000689183751907905!GO:0000151;ubiquitin ligase complex;0.000702738013977734!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000728241631039019!GO:0005083;small GTPase regulator activity;0.000742140012678806!GO:0006487;protein amino acid N-linked glycosylation;0.000785538594340684!GO:0008047;enzyme activator activity;0.000786081446526669!GO:0035257;nuclear hormone receptor binding;0.000806409209589952!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000812738348379231!GO:0007010;cytoskeleton organization and biogenesis;0.000821160301889334!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000864767062980151!GO:0045893;positive regulation of transcription, DNA-dependent;0.000865103115359437!GO:0005741;mitochondrial outer membrane;0.000865103115359437!GO:0006606;protein import into nucleus;0.000885730159037964!GO:0000245;spliceosome assembly;0.000887792909268353!GO:0005885;Arp2/3 protein complex;0.000931855601371188!GO:0016567;protein ubiquitination;0.000931855601371188!GO:0046983;protein dimerization activity;0.000955664806973011!GO:0006644;phospholipid metabolic process;0.00100130337909648!GO:0005769;early endosome;0.0010269182825365!GO:0006164;purine nucleotide biosynthetic process;0.00106694424888179!GO:0019867;outer membrane;0.00106706836537905!GO:0009100;glycoprotein metabolic process;0.0010674718109935!GO:0008234;cysteine-type peptidase activity;0.00108220797486099!GO:0043492;ATPase activity, coupled to movement of substances;0.00110805009306476!GO:0030532;small nuclear ribonucleoprotein complex;0.00113629082574876!GO:0031968;organelle outer membrane;0.00113629082574876!GO:0022890;inorganic cation transmembrane transporter activity;0.00114072156250421!GO:0007049;cell cycle;0.00119167192353768!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00122968492609765!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00126245908434066!GO:0007005;mitochondrion organization and biogenesis;0.00127841638197878!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00128977247161759!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00128977247161759!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00128977247161759!GO:0043623;cellular protein complex assembly;0.00129155046844739!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00129971761098743!GO:0016853;isomerase activity;0.00132605246947431!GO:0005774;vacuolar membrane;0.00134422390051577!GO:0031902;late endosome membrane;0.00139801716262248!GO:0009260;ribonucleotide biosynthetic process;0.00152059557589938!GO:0043021;ribonucleoprotein binding;0.00153691826559039!GO:0004197;cysteine-type endopeptidase activity;0.00156249515016272!GO:0003724;RNA helicase activity;0.00157338880910122!GO:0050794;regulation of cellular process;0.00159194394948706!GO:0006635;fatty acid beta-oxidation;0.00160799938215252!GO:0046467;membrane lipid biosynthetic process;0.0017287417466663!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00176845479989792!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00180452362720218!GO:0016125;sterol metabolic process;0.00185917408103064!GO:0005765;lysosomal membrane;0.00189282992202444!GO:0009966;regulation of signal transduction;0.00192040708135431!GO:0050657;nucleic acid transport;0.00194008787510968!GO:0051236;establishment of RNA localization;0.00194008787510968!GO:0050658;RNA transport;0.00194008787510968!GO:0006631;fatty acid metabolic process;0.00204271992723031!GO:0045454;cell redox homeostasis;0.00227067267679669!GO:0019904;protein domain specific binding;0.00227446636139227!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00228248697835326!GO:0045941;positive regulation of transcription;0.00230323490466407!GO:0048037;cofactor binding;0.00234855891362705!GO:0006752;group transfer coenzyme metabolic process;0.00238759878988771!GO:0006006;glucose metabolic process;0.00239407929048037!GO:0019843;rRNA binding;0.00243712922465728!GO:0030695;GTPase regulator activity;0.0024716334321318!GO:0045786;negative regulation of progression through cell cycle;0.00254078600309654!GO:0043065;positive regulation of apoptosis;0.0025451741656795!GO:0001726;ruffle;0.00255825440313697!GO:0051128;regulation of cellular component organization and biogenesis;0.00256988961162085!GO:0035258;steroid hormone receptor binding;0.00270466990389074!GO:0006403;RNA localization;0.00270466990389074!GO:0016301;kinase activity;0.00279948162726542!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00281378351859032!GO:0004364;glutathione transferase activity;0.00292475545498858!GO:0009101;glycoprotein biosynthetic process;0.00298286074934783!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00298391818428621!GO:0051920;peroxiredoxin activity;0.00302398137407506!GO:0065002;intracellular protein transport across a membrane;0.00303381851664961!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00311545873807612!GO:0004386;helicase activity;0.00338515955458005!GO:0008629;induction of apoptosis by intracellular signals;0.00348766723615381!GO:0065009;regulation of a molecular function;0.00350523840594226!GO:0017040;ceramidase activity;0.00376348364634317!GO:0003697;single-stranded DNA binding;0.00393986601943293!GO:0005667;transcription factor complex;0.00395270251221746!GO:0007266;Rho protein signal transduction;0.00397303855783251!GO:0003702;RNA polymerase II transcription factor activity;0.00405616511665653!GO:0008203;cholesterol metabolic process;0.00413848507186311!GO:0043068;positive regulation of programmed cell death;0.00422998449408658!GO:0006979;response to oxidative stress;0.00427490979445367!GO:0030127;COPII vesicle coat;0.0043927920514241!GO:0012507;ER to Golgi transport vesicle membrane;0.0043927920514241!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00448647021247151!GO:0006869;lipid transport;0.00450053871859154!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00450490478050082!GO:0030658;transport vesicle membrane;0.00453150305917214!GO:0006897;endocytosis;0.0045627298376194!GO:0010324;membrane invagination;0.0045627298376194!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00458582669284857!GO:0004812;aminoacyl-tRNA ligase activity;0.00458582669284857!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00458582669284857!GO:0030118;clathrin coat;0.0045863242407737!GO:0005643;nuclear pore;0.00469516248244281!GO:0005762;mitochondrial large ribosomal subunit;0.00469516248244281!GO:0000315;organellar large ribosomal subunit;0.00469516248244281!GO:0008026;ATP-dependent helicase activity;0.00511954804114948!GO:0030134;ER to Golgi transport vesicle;0.00513648764421395!GO:0033673;negative regulation of kinase activity;0.00514155017669395!GO:0006469;negative regulation of protein kinase activity;0.00514155017669395!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00560544285788024!GO:0045045;secretory pathway;0.00566015494199923!GO:0008250;oligosaccharyl transferase complex;0.00573997985965459!GO:0009719;response to endogenous stimulus;0.00575363817210676!GO:0006650;glycerophospholipid metabolic process;0.00583318519825559!GO:0006974;response to DNA damage stimulus;0.00601818726775397!GO:0044437;vacuolar part;0.00603861975044062!GO:0030041;actin filament polymerization;0.00603861975044062!GO:0006323;DNA packaging;0.0062044198230953!GO:0043038;amino acid activation;0.00622608922240619!GO:0006418;tRNA aminoacylation for protein translation;0.00622608922240619!GO:0043039;tRNA aminoacylation;0.00622608922240619!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00628146550547697!GO:0046930;pore complex;0.00633160238015202!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00639949609919375!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00642884941144084!GO:0006486;protein amino acid glycosylation;0.00669855167661955!GO:0043413;biopolymer glycosylation;0.00674340804952101!GO:0006917;induction of apoptosis;0.00674340804952101!GO:0009967;positive regulation of signal transduction;0.00683702076652392!GO:0000074;regulation of progression through cell cycle;0.00695387208848211!GO:0032940;secretion by cell;0.00720106060399061!GO:0012506;vesicle membrane;0.00725178998898799!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00726460786224502!GO:0008286;insulin receptor signaling pathway;0.00733123137221913!GO:0051726;regulation of cell cycle;0.00749096738032479!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00750997841212863!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00750997841212863!GO:0006892;post-Golgi vesicle-mediated transport;0.0077027843728162!GO:0033116;ER-Golgi intermediate compartment membrane;0.0079252273777309!GO:0048468;cell development;0.00793394828079746!GO:0030659;cytoplasmic vesicle membrane;0.0084965449644381!GO:0006891;intra-Golgi vesicle-mediated transport;0.0084965449644381!GO:0030518;steroid hormone receptor signaling pathway;0.00855457841704772!GO:0050789;regulation of biological process;0.00866112755878113!GO:0016568;chromatin modification;0.00872103890418411!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00890044613878803!GO:0033043;regulation of organelle organization and biogenesis;0.00890044613878803!GO:0017166;vinculin binding;0.00930353750941457!GO:0016363;nuclear matrix;0.00933159005284353!GO:0045892;negative regulation of transcription, DNA-dependent;0.00934756105432706!GO:0005905;coated pit;0.00958715859300841!GO:0004576;oligosaccharyl transferase activity;0.00962601652846789!GO:0019395;fatty acid oxidation;0.00977281163661431!GO:0006749;glutathione metabolic process;0.00977375229071256!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00977375229071256!GO:0012502;induction of programmed cell death;0.00977375229071256!GO:0003690;double-stranded DNA binding;0.00985652022723936!GO:0051539;4 iron, 4 sulfur cluster binding;0.00996570662622806!GO:0030521;androgen receptor signaling pathway;0.00996570662622806!GO:0008361;regulation of cell size;0.0103240852347964!GO:0030145;manganese ion binding;0.0103806922427982!GO:0001887;selenium metabolic process;0.0103806922427982!GO:0008202;steroid metabolic process;0.0108130352244186!GO:0044433;cytoplasmic vesicle part;0.0112076697783636!GO:0051028;mRNA transport;0.0114524708285739!GO:0051348;negative regulation of transferase activity;0.0117276008597207!GO:0005048;signal sequence binding;0.0120563958411359!GO:0000314;organellar small ribosomal subunit;0.0121077009007282!GO:0005763;mitochondrial small ribosomal subunit;0.0121077009007282!GO:0030176;integral to endoplasmic reticulum membrane;0.0123004005443445!GO:0048500;signal recognition particle;0.0123320828414882!GO:0008186;RNA-dependent ATPase activity;0.0123693667826904!GO:0006665;sphingolipid metabolic process;0.0124168596267277!GO:0016049;cell growth;0.0126032124981736!GO:0030660;Golgi-associated vesicle membrane;0.0145029464288876!GO:0030832;regulation of actin filament length;0.0147668939759189!GO:0032535;regulation of cellular component size;0.0148531883179587!GO:0051168;nuclear export;0.0149180978292656!GO:0018196;peptidyl-asparagine modification;0.0149478076403313!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0149478076403313!GO:0004300;enoyl-CoA hydratase activity;0.0149526478271814!GO:0044275;cellular carbohydrate catabolic process;0.0149925828650968!GO:0016791;phosphoric monoester hydrolase activity;0.0149925828650968!GO:0060090;molecular adaptor activity;0.0152060988632934!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0159364878942382!GO:0051235;maintenance of localization;0.0160551163169117!GO:0001558;regulation of cell growth;0.0167221835041485!GO:0030119;AP-type membrane coat adaptor complex;0.0171725703613565!GO:0051179;localization;0.0172654232012133!GO:0003729;mRNA binding;0.0175243711286647!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0182153050525968!GO:0016408;C-acyltransferase activity;0.018338265260689!GO:0051017;actin filament bundle formation;0.0183723328460563!GO:0051014;actin filament severing;0.0184588813849585!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0187578528854628!GO:0006642;triacylglycerol mobilization;0.0190551326596693!GO:0043488;regulation of mRNA stability;0.019162196851867!GO:0043487;regulation of RNA stability;0.019162196851867!GO:0006402;mRNA catabolic process;0.0193856532229954!GO:0016405;CoA-ligase activity;0.0195436819628533!GO:0015036;disulfide oxidoreductase activity;0.0195436819628533!GO:0065004;protein-DNA complex assembly;0.0195436819628533!GO:0046474;glycerophospholipid biosynthetic process;0.0196868154548403!GO:0051540;metal cluster binding;0.0199286553982065!GO:0051536;iron-sulfur cluster binding;0.0199286553982065!GO:0015926;glucosidase activity;0.0199582960733291!GO:0030027;lamellipodium;0.0201427455872202!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0201827441283344!GO:0051276;chromosome organization and biogenesis;0.020573465820591!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0208906214165194!GO:0045047;protein targeting to ER;0.0208906214165194!GO:0030139;endocytic vesicle;0.0213438484800863!GO:0031901;early endosome membrane;0.0213438484800863!GO:0005912;adherens junction;0.021528942687888!GO:0044438;microbody part;0.021528942687888!GO:0044439;peroxisomal part;0.021528942687888!GO:0030663;COPI coated vesicle membrane;0.0215659166621631!GO:0030126;COPI vesicle coat;0.0215659166621631!GO:0035035;histone acetyltransferase binding;0.0215659166621631!GO:0006333;chromatin assembly or disassembly;0.0216160570412178!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0216449344246983!GO:0051252;regulation of RNA metabolic process;0.0218450748017143!GO:0005096;GTPase activator activity;0.0218809405592951!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0220278661260534!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0221888530410445!GO:0030384;phosphoinositide metabolic process;0.0224548995828708!GO:0030833;regulation of actin filament polymerization;0.0224548995828708!GO:0051101;regulation of DNA binding;0.0224798191225882!GO:0016584;nucleosome positioning;0.0226148709794952!GO:0009117;nucleotide metabolic process;0.0226935344550187!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0231971906663608!GO:0015002;heme-copper terminal oxidase activity;0.0231971906663608!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0231971906663608!GO:0004129;cytochrome-c oxidase activity;0.0231971906663608!GO:0046364;monosaccharide biosynthetic process;0.0237092913988778!GO:0046165;alcohol biosynthetic process;0.0237092913988778!GO:0006672;ceramide metabolic process;0.0241439936016584!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0247221436609859!GO:0006693;prostaglandin metabolic process;0.024950924506403!GO:0006692;prostanoid metabolic process;0.024950924506403!GO:0016860;intramolecular oxidoreductase activity;0.0251313282354952!GO:0004448;isocitrate dehydrogenase activity;0.0251690728076829!GO:0005862;muscle thin filament tropomyosin;0.0254279447161249!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0256434548094737!GO:0031529;ruffle organization and biogenesis;0.0260192850209318!GO:0030131;clathrin adaptor complex;0.0262351331385468!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0267493608475687!GO:0004004;ATP-dependent RNA helicase activity;0.0284222181392165!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0284222181392165!GO:0008632;apoptotic program;0.0285862703535634!GO:0017042;glycosylceramidase activity;0.0285862703535634!GO:0010045;response to nickel ion;0.0285862703535634!GO:0000016;lactase activity;0.0285862703535634!GO:0010288;response to lead ion;0.0285862703535634!GO:0009744;response to sucrose stimulus;0.0285862703535634!GO:0004463;leukotriene-A4 hydrolase activity;0.0288584502226138!GO:0004301;epoxide hydrolase activity;0.0288584502226138!GO:0048002;antigen processing and presentation of peptide antigen;0.0290879504639738!GO:0016788;hydrolase activity, acting on ester bonds;0.0301229391884309!GO:0004587;ornithine-oxo-acid transaminase activity;0.0309039874567709!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0310375495324099!GO:0050681;androgen receptor binding;0.0311899793477023!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0316860555416296!GO:0006518;peptide metabolic process;0.033141519848878!GO:0031903;microbody membrane;0.033141519848878!GO:0005778;peroxisomal membrane;0.033141519848878!GO:0046519;sphingoid metabolic process;0.033141519848878!GO:0042254;ribosome biogenesis and assembly;0.0331707204207587!GO:0000062;acyl-CoA binding;0.0332781066805126!GO:0016859;cis-trans isomerase activity;0.0337883875146344!GO:0043433;negative regulation of transcription factor activity;0.0341869476033208!GO:0033344;cholesterol efflux;0.0344350049057979!GO:0008283;cell proliferation;0.0344350049057979!GO:0048487;beta-tubulin binding;0.03455491081205!GO:0009893;positive regulation of metabolic process;0.0349465126505727!GO:0004860;protein kinase inhibitor activity;0.0350299186449325!GO:0006401;RNA catabolic process;0.0350299186449325!GO:0030132;clathrin coat of coated pit;0.035280941802953!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0362709028836799!GO:0051338;regulation of transferase activity;0.0363233866761855!GO:0046578;regulation of Ras protein signal transduction;0.0366984273896738!GO:0006414;translational elongation;0.0377469957591624!GO:0015992;proton transport;0.0379284898172062!GO:0042157;lipoprotein metabolic process;0.0381323982050936!GO:0015629;actin cytoskeleton;0.0382170837618617!GO:0043022;ribosome binding;0.0382596168452146!GO:0006684;sphingomyelin metabolic process;0.0384237666203809!GO:0005070;SH3/SH2 adaptor activity;0.0384396380860633!GO:0031647;regulation of protein stability;0.0390267405987566!GO:0007030;Golgi organization and biogenesis;0.0405340408998698!GO:0008312;7S RNA binding;0.0412455993649782!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0425165142973102!GO:0008022;protein C-terminus binding;0.0425165142973102!GO:0046489;phosphoinositide biosynthetic process;0.0425443156812946!GO:0030522;intracellular receptor-mediated signaling pathway;0.0425443156812946!GO:0019319;hexose biosynthetic process;0.0432787541072119!GO:0005869;dynactin complex;0.0437307621226569!GO:0051087;chaperone binding;0.0440347198506406!GO:0004767;sphingomyelin phosphodiesterase activity;0.0446911428899041!GO:0006818;hydrogen transport;0.0447804186149081!GO:0000785;chromatin;0.045612929305777!GO:0004558;alpha-glucosidase activity;0.0456647802436277!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.04619666214763!GO:0006611;protein export from nucleus;0.04663837374401!GO:0005938;cell cortex;0.0467917724040949!GO:0004674;protein serine/threonine kinase activity;0.0469792269228512!GO:0001889;liver development;0.0471743560743623!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0486634897735907!GO:0042803;protein homodimerization activity;0.0489179139113164!GO:0008139;nuclear localization sequence binding;0.0489200300656896 | |||
|sample_id=10024 | |sample_id=10024 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=small intestine | |sample_tissue=small intestine | ||
|top_motifs=HNF4A_NR2F1,2:8.68164985908;HNF1A:5.13664889563;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.9669383434;GATA6:2.92780447857;SNAI1..3:2.59927278575;ZEB1:2.43873737324;ESRRA:2.18026934664;NR6A1:1.98173712288;SPZ1:1.96763083435;MTF1:1.89769652247;T:1.79370700629;NR1H4:1.78462338244;ADNP_IRX_SIX_ZHX:1.7795099758;SP1:1.74788385533;AR:1.7021020898;FOXA2:1.696272148;MYOD1:1.55392883068;RBPJ:1.55163902476;XCPE1{core}:1.41247040603;TFCP2:1.36520017167;TBP:1.3518302981;FOXL1:1.25419430968;EP300:1.15697913463;FOX{D1,D2}:1.13768626904;MAZ:1.13468184782;TFAP2{A,C}:1.10947548648;LMO2:1.09461070427;SRF:1.09076096607;ZNF148:1.07431186056;ATF6:1.06985927944;IRF1,2:1.03180201038;POU5F1:1.00164175914;NR3C1:0.995577419637;TBX4,5:0.991097053638;FOX{F1,F2,J1}:0.97980884312;MYBL2:0.965355281882;DMAP1_NCOR{1,2}_SMARC:0.937363872234;VSX1,2:0.924374228752;FOXO1,3,4:0.916921168141;MYFfamily:0.866770196893;PITX1..3:0.829245650651;TLX1..3_NFIC{dimer}:0.771419356735;IRF7:0.747799653007;NR5A1,2:0.733264299737;HMX1:0.728593217462;POU2F1..3:0.696455256739;FOXN1:0.652964505532;HIC1:0.64957974764;PAX6:0.632140410461;MED-1{core}:0.627179868924;PAX5:0.585754195268;GTF2I:0.583151096687;FOXD3:0.577546521205;PATZ1:0.562440297035;ESR1:0.558488791259;TFAP2B:0.558245972599;MTE{core}:0.526408168981;FOXP1:0.497738497607;ETS1,2:0.478359990067;NFATC1..3:0.47403197363;STAT1,3:0.454432065466;RREB1:0.403911836325;TLX2:0.368914302116;FOXM1:0.323191504231;SREBF1,2:0.316541320228;NKX6-1,2:0.280535177904;TFAP4:0.271884193857;LEF1_TCF7_TCF7L1,2:0.257815525124;SPIB:0.256197465101;ALX1:0.248599708485;EBF1:0.242936844399;STAT2,4,6:0.234835004213;DBP:0.22330752278;REST:0.219423670071;FOX{I1,J2}:0.214850439313;bHLH_family:0.195409475914;RXRA_VDR{dimer}:0.19170219359;ONECUT1,2:0.18071094454;SOX5:0.170073601533;HAND1,2:0.168856153912;NANOG:0.158225431644;PRDM1:0.147537037776;HOX{A6,A7,B6,B7}:0.124568470037;GTF2A1,2:0.114176847658;NHLH1,2:0.106579760886;IKZF1:0.106234220702;MAFB:0.101560589642;ZNF423:0.0998131711919;GZF1:0.095954968321;POU6F1:0.0938231350068;RUNX1..3:0.0377849464842;SPI1:0.0325038615865;ELF1,2,4:0.0283337723077;ZFP161:-0.00359081588732;HMGA1,2:-0.00762892505689;EGR1..3:-0.0124764053768;RFX2..5_RFXANK_RFXAP:-0.0212541679596;GFI1B:-0.0254190196322;IKZF2:-0.0296442589273;TEAD1:-0.030441795975;GCM1,2:-0.0306765495484;MZF1:-0.0362576090908;TGIF1:-0.036298973053;PBX1:-0.119410610258;ATF4:-0.122308267209;BREu{core}:-0.15170314185;SMAD1..7,9:-0.152453373047;CUX2:-0.156822046183;TOPORS:-0.167749608014;NFY{A,B,C}:-0.171432553778;JUN:-0.175162913528;NKX2-3_NKX2-5:-0.17894141678;RXR{A,B,G}:-0.197623959857;ZBTB6:-0.211101095608;PRRX1,2:-0.225090543429;ZNF143:-0.23078261251;ATF5_CREB3:-0.248372599552;ATF2:-0.261946180455;PAX1,9:-0.284374603194;KLF4:-0.297052184608;FOSL2:-0.314329500185;MEF2{A,B,C,D}:-0.324246692059;NFKB1_REL_RELA:-0.335372718532;NFE2:-0.343777616177;GFI1:-0.361621129445;CRX:-0.369605058362;ELK1,4_GABP{A,B1}:-0.372214827498;HLF:-0.380372709259;SOX2:-0.38415242984;NFIL3:-0.400976684423;FOXQ1:-0.443302565853;LHX3,4:-0.44528793169;PAX3,7:-0.453398911262;CDX1,2,4:-0.478614809529;EVI1:-0.509407687212;NKX3-2:-0.517583635138;NKX2-1,4:-0.518318743565;FOXP3:-0.52396025363;BACH2:-0.524365176203;OCT4_SOX2{dimer}:-0.526688230303;PAX2:-0.537508172001;FOS_FOS{B,L1}_JUN{B,D}:-0.542207412976;TFDP1:-0.544839928507;GLI1..3:-0.581795989449;NKX2-2,8:-0.633544788656;NRF1:-0.643733332802;E2F1..5:-0.662259371354;ZNF238:-0.665616133255;CDC5L:-0.665928178705;ZIC1..3:-0.67401639297;NFE2L2:-0.695428016946;TP53:-0.720870122299;SOX{8,9,10}:-0.733772044786;NFIX:-0.77628836289;TAL1_TCF{3,4,12}:-0.778752040902;RORA:-0.80009975245;UFEwm:-0.811744233358;XBP1:-0.82949807667;CREB1:-0.829561337688;HES1:-0.830340689918;POU1F1:-0.836392914482;HOX{A5,B5}:-0.852350267461;GATA4:-0.889482780428;CEBPA,B_DDIT3:-0.895045348602;ARID5B:-0.915347376348;SOX17:-0.919013301943;ALX4:-0.923551926586;YY1:-0.924371497693;BPTF:-0.947706396652;ZNF384:-0.960678204525;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.02077876011;TEF:-1.02604352855;NKX3-1:-1.10028531261;ZBTB16:-1.12591189512;NANOG{mouse}:-1.14094737116;MYB:-1.15889250661;AIRE:-1.16077394861;AHR_ARNT_ARNT2:-1.17724854296;HBP1_HMGB_SSRP1_UBTF:-1.19655275875;PDX1:-1.24513736426;EN1,2:-1.2864491539;RFX1:-1.32573818496;HOXA9_MEIS1:-1.35314410962;PAX8:-1.36815778177;PPARG:-1.39933490966;NFE2L1:-1.44731375286;HIF1A:-1.54180117376;POU3F1..4:-1.62359871775;HSF1,2:-1.78465099677;HOX{A4,D4}:-2.13383578284;PAX4:-2.335627364;STAT5{A,B}:-2.48565302756 | |top_motifs=HNF4A_NR2F1,2:8.68164985908;HNF1A:5.13664889563;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.9669383434;GATA6:2.92780447857;SNAI1..3:2.59927278575;ZEB1:2.43873737324;ESRRA:2.18026934664;NR6A1:1.98173712288;SPZ1:1.96763083435;MTF1:1.89769652247;T:1.79370700629;NR1H4:1.78462338244;ADNP_IRX_SIX_ZHX:1.7795099758;SP1:1.74788385533;AR:1.7021020898;FOXA2:1.696272148;MYOD1:1.55392883068;RBPJ:1.55163902476;XCPE1{core}:1.41247040603;TFCP2:1.36520017167;TBP:1.3518302981;FOXL1:1.25419430968;EP300:1.15697913463;FOX{D1,D2}:1.13768626904;MAZ:1.13468184782;TFAP2{A,C}:1.10947548648;LMO2:1.09461070427;SRF:1.09076096607;ZNF148:1.07431186056;ATF6:1.06985927944;IRF1,2:1.03180201038;POU5F1:1.00164175914;NR3C1:0.995577419637;TBX4,5:0.991097053638;FOX{F1,F2,J1}:0.97980884312;MYBL2:0.965355281882;DMAP1_NCOR{1,2}_SMARC:0.937363872234;VSX1,2:0.924374228752;FOXO1,3,4:0.916921168141;MYFfamily:0.866770196893;PITX1..3:0.829245650651;TLX1..3_NFIC{dimer}:0.771419356735;IRF7:0.747799653007;NR5A1,2:0.733264299737;HMX1:0.728593217462;POU2F1..3:0.696455256739;FOXN1:0.652964505532;HIC1:0.64957974764;PAX6:0.632140410461;MED-1{core}:0.627179868924;PAX5:0.585754195268;GTF2I:0.583151096687;FOXD3:0.577546521205;PATZ1:0.562440297035;ESR1:0.558488791259;TFAP2B:0.558245972599;MTE{core}:0.526408168981;FOXP1:0.497738497607;ETS1,2:0.478359990067;NFATC1..3:0.47403197363;STAT1,3:0.454432065466;RREB1:0.403911836325;TLX2:0.368914302116;FOXM1:0.323191504231;SREBF1,2:0.316541320228;NKX6-1,2:0.280535177904;TFAP4:0.271884193857;LEF1_TCF7_TCF7L1,2:0.257815525124;SPIB:0.256197465101;ALX1:0.248599708485;EBF1:0.242936844399;STAT2,4,6:0.234835004213;DBP:0.22330752278;REST:0.219423670071;FOX{I1,J2}:0.214850439313;bHLH_family:0.195409475914;RXRA_VDR{dimer}:0.19170219359;ONECUT1,2:0.18071094454;SOX5:0.170073601533;HAND1,2:0.168856153912;NANOG:0.158225431644;PRDM1:0.147537037776;HOX{A6,A7,B6,B7}:0.124568470037;GTF2A1,2:0.114176847658;NHLH1,2:0.106579760886;IKZF1:0.106234220702;MAFB:0.101560589642;ZNF423:0.0998131711919;GZF1:0.095954968321;POU6F1:0.0938231350068;RUNX1..3:0.0377849464842;SPI1:0.0325038615865;ELF1,2,4:0.0283337723077;ZFP161:-0.00359081588732;HMGA1,2:-0.00762892505689;EGR1..3:-0.0124764053768;RFX2..5_RFXANK_RFXAP:-0.0212541679596;GFI1B:-0.0254190196322;IKZF2:-0.0296442589273;TEAD1:-0.030441795975;GCM1,2:-0.0306765495484;MZF1:-0.0362576090908;TGIF1:-0.036298973053;PBX1:-0.119410610258;ATF4:-0.122308267209;BREu{core}:-0.15170314185;SMAD1..7,9:-0.152453373047;CUX2:-0.156822046183;TOPORS:-0.167749608014;NFY{A,B,C}:-0.171432553778;JUN:-0.175162913528;NKX2-3_NKX2-5:-0.17894141678;RXR{A,B,G}:-0.197623959857;ZBTB6:-0.211101095608;PRRX1,2:-0.225090543429;ZNF143:-0.23078261251;ATF5_CREB3:-0.248372599552;ATF2:-0.261946180455;PAX1,9:-0.284374603194;KLF4:-0.297052184608;FOSL2:-0.314329500185;MEF2{A,B,C,D}:-0.324246692059;NFKB1_REL_RELA:-0.335372718532;NFE2:-0.343777616177;GFI1:-0.361621129445;CRX:-0.369605058362;ELK1,4_GABP{A,B1}:-0.372214827498;HLF:-0.380372709259;SOX2:-0.38415242984;NFIL3:-0.400976684423;FOXQ1:-0.443302565853;LHX3,4:-0.44528793169;PAX3,7:-0.453398911262;CDX1,2,4:-0.478614809529;EVI1:-0.509407687212;NKX3-2:-0.517583635138;NKX2-1,4:-0.518318743565;FOXP3:-0.52396025363;BACH2:-0.524365176203;OCT4_SOX2{dimer}:-0.526688230303;PAX2:-0.537508172001;FOS_FOS{B,L1}_JUN{B,D}:-0.542207412976;TFDP1:-0.544839928507;GLI1..3:-0.581795989449;NKX2-2,8:-0.633544788656;NRF1:-0.643733332802;E2F1..5:-0.662259371354;ZNF238:-0.665616133255;CDC5L:-0.665928178705;ZIC1..3:-0.67401639297;NFE2L2:-0.695428016946;TP53:-0.720870122299;SOX{8,9,10}:-0.733772044786;NFIX:-0.77628836289;TAL1_TCF{3,4,12}:-0.778752040902;RORA:-0.80009975245;UFEwm:-0.811744233358;XBP1:-0.82949807667;CREB1:-0.829561337688;HES1:-0.830340689918;POU1F1:-0.836392914482;HOX{A5,B5}:-0.852350267461;GATA4:-0.889482780428;CEBPA,B_DDIT3:-0.895045348602;ARID5B:-0.915347376348;SOX17:-0.919013301943;ALX4:-0.923551926586;YY1:-0.924371497693;BPTF:-0.947706396652;ZNF384:-0.960678204525;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.02077876011;TEF:-1.02604352855;NKX3-1:-1.10028531261;ZBTB16:-1.12591189512;NANOG{mouse}:-1.14094737116;MYB:-1.15889250661;AIRE:-1.16077394861;AHR_ARNT_ARNT2:-1.17724854296;HBP1_HMGB_SSRP1_UBTF:-1.19655275875;PDX1:-1.24513736426;EN1,2:-1.2864491539;RFX1:-1.32573818496;HOXA9_MEIS1:-1.35314410962;PAX8:-1.36815778177;PPARG:-1.39933490966;NFE2L1:-1.44731375286;HIF1A:-1.54180117376;POU3F1..4:-1.62359871775;HSF1,2:-1.78465099677;HOX{A4,D4}:-2.13383578284;PAX4:-2.335627364;STAT5{A,B}:-2.48565302756 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10024-101D6;search_select_hide=table117:FF:10024-101D6 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | small intestine, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10630 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10630
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10630
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.451 |
| 10 | 10 | 0.163 |
| 100 | 100 | 0.364 |
| 101 | 101 | 0.77 |
| 102 | 102 | 0.109 |
| 103 | 103 | 0.575 |
| 104 | 104 | 0.957 |
| 105 | 105 | 0.127 |
| 106 | 106 | 0.144 |
| 107 | 107 | 0.0707 |
| 108 | 108 | 0.642 |
| 109 | 109 | 0.707 |
| 11 | 11 | 0.903 |
| 110 | 110 | 0.259 |
| 111 | 111 | 0.493 |
| 112 | 112 | 0.0967 |
| 113 | 113 | 0.662 |
| 114 | 114 | 0.689 |
| 115 | 115 | 0.769 |
| 116 | 116 | 0.695 |
| 117 | 117 | 0.0949 |
| 118 | 118 | 0.734 |
| 119 | 119 | 0.351 |
| 12 | 12 | 0.987 |
| 120 | 120 | 0.249 |
| 121 | 121 | 0.953 |
| 122 | 122 | 0.589 |
| 123 | 123 | 1 |
| 124 | 124 | 0.993 |
| 125 | 125 | 0.033 |
| 126 | 126 | 0.0579 |
| 127 | 127 | 0.805 |
| 128 | 128 | 0.0342 |
| 129 | 129 | 0.493 |
| 13 | 13 | 0.494 |
| 130 | 130 | 0.845 |
| 131 | 131 | 0.828 |
| 132 | 132 | 0.0601 |
| 133 | 133 | 0.0197 |
| 134 | 134 | 0.06 |
| 135 | 135 | 0.422 |
| 136 | 136 | 0.706 |
| 137 | 137 | 0.462 |
| 138 | 138 | 0.568 |
| 139 | 139 | 0.141 |
| 14 | 14 | 0.481 |
| 140 | 140 | 0.838 |
| 141 | 141 | 0.605 |
| 142 | 142 | 0.792 |
| 143 | 143 | 0.068 |
| 144 | 144 | 0.504 |
| 145 | 145 | 0.055 |
| 146 | 146 | 0.215 |
| 147 | 147 | 0.786 |
| 148 | 148 | 0.616 |
| 149 | 149 | 0.0444 |
| 15 | 15 | 0.431 |
| 150 | 150 | 0.919 |
| 151 | 151 | 0.575 |
| 152 | 152 | 0.0473 |
| 153 | 153 | 0.972 |
| 154 | 154 | 0.667 |
| 155 | 155 | 0.282 |
| 156 | 156 | 0.852 |
| 157 | 157 | 0.449 |
| 158 | 158 | 0.649 |
| 159 | 159 | 0.437 |
| 16 | 16 | 0.922 |
| 160 | 160 | 0.731 |
| 161 | 161 | 0.587 |
| 162 | 162 | 0.603 |
| 163 | 163 | 0.708 |
| 164 | 164 | 0.357 |
| 165 | 165 | 0.47 |
| 166 | 166 | 0.496 |
| 167 | 167 | 0.449 |
| 168 | 168 | 0.00733 |
| 169 | 169 | 0.247 |
| 17 | 17 | 0.474 |
| 18 | 18 | 0.00981 |
| 19 | 19 | 0.175 |
| 2 | 2 | 0.0109 |
| 20 | 20 | 0.171 |
| 21 | 21 | 0.535 |
| 22 | 22 | 0.425 |
| 23 | 23 | 0.287 |
| 24 | 24 | 0.768 |
| 25 | 25 | 0.773 |
| 26 | 26 | 0.794 |
| 27 | 27 | 0.421 |
| 28 | 28 | 0.805 |
| 29 | 29 | 0.0974 |
| 3 | 3 | 0.765 |
| 30 | 30 | 0.0207 |
| 31 | 31 | 0.869 |
| 32 | 32 | 0.495 |
| 33 | 33 | 0.744 |
| 34 | 34 | 0.352 |
| 35 | 35 | 0.565 |
| 36 | 36 | 0.0498 |
| 37 | 37 | 0.967 |
| 38 | 38 | 0.437 |
| 39 | 39 | 0.101 |
| 4 | 4 | 0.329 |
| 40 | 40 | 0.795 |
| 41 | 41 | 0.111 |
| 42 | 42 | 0.757 |
| 43 | 43 | 0.985 |
| 44 | 44 | 0.428 |
| 45 | 45 | 0.1 |
| 46 | 46 | 0.584 |
| 47 | 47 | 0.644 |
| 48 | 48 | 0.889 |
| 49 | 49 | 0.471 |
| 5 | 5 | 0.865 |
| 50 | 50 | 0.23 |
| 51 | 51 | 0.797 |
| 52 | 52 | 0.0298 |
| 53 | 53 | 0.347 |
| 54 | 54 | 0.569 |
| 55 | 55 | 0.928 |
| 56 | 56 | 0.671 |
| 57 | 57 | 0.201 |
| 58 | 58 | 0.595 |
| 59 | 59 | 0.362 |
| 6 | 6 | 0.882 |
| 60 | 60 | 0.106 |
| 61 | 61 | 0.832 |
| 62 | 62 | 0.998 |
| 63 | 63 | 0.662 |
| 64 | 64 | 0.924 |
| 65 | 65 | 0.394 |
| 66 | 66 | 0.0649 |
| 67 | 67 | 0.0775 |
| 68 | 68 | 0.543 |
| 69 | 69 | 0.981 |
| 7 | 7 | 0.772 |
| 70 | 70 | 0.587 |
| 71 | 71 | 0.436 |
| 72 | 72 | 0.712 |
| 73 | 73 | 0.363 |
| 74 | 74 | 0.284 |
| 75 | 75 | 0.102 |
| 76 | 76 | 0.0775 |
| 77 | 77 | 0.026 |
| 78 | 78 | 0.136 |
| 79 | 79 | 0.152 |
| 8 | 8 | 0.93 |
| 80 | 80 | 0.00717 |
| 81 | 81 | 0.252 |
| 82 | 82 | 0.967 |
| 83 | 83 | 0.79 |
| 84 | 84 | 0.821 |
| 85 | 85 | 0.18 |
| 86 | 86 | 0.97 |
| 87 | 87 | 0.569 |
| 88 | 88 | 0.461 |
| 89 | 89 | 0.754 |
| 9 | 9 | 0.475 |
| 90 | 90 | 0.101 |
| 91 | 91 | 0.725 |
| 92 | 92 | 0.205 |
| 93 | 93 | 0.293 |
| 94 | 94 | 0.0275 |
| 95 | 95 | 0.807 |
| 96 | 96 | 0.955 |
| 97 | 97 | 0.763 |
| 98 | 98 | 0.419 |
| 99 | 99 | 0.0858 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10630
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010024 human small intestine - adult sample
FF:0010048 human smooth muscle - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002108 (small intestine)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010024 (human small intestine - adult sample)
0010048 (human smooth muscle - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
