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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005480
|DRA_sample_Accession=CAGE@SAMD00005480
|accession_numbers=CAGE;DRX008699;DRR009571;DRZ000996;DRZ002381
|accession_numbers=CAGE;DRX008699;DRR009571;DRZ000996;DRZ002381;DRZ012346;DRZ013731
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000200,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0010317,UBERON:0001017,UBERON:0007190,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000200,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0010317,UBERON:0001017,UBERON:0007190,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/paracentral%2520gyrus%252c%2520adult%252c%2520pool1.CNhs10642.10035-101E8.hg38.nobarcode.ctss.bed.gz
|id=FF:10035-101E8
|id=FF:10035-101E8
|is_a=EFO:0002091;;FF:0010035
|is_a=EFO:0002091;;FF:0010035
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|library_id=CNhs10642
|library_id=CNhs10642
|library_id_phase_based=2:CNhs10642
|library_id_phase_based=2:CNhs10642
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10035
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10035
|name=paracentral gyrus, adult, pool1
|name=paracentral gyrus, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 91: Line 101:
|top_motifs=REST:4.48037292993;NHLH1,2:4.35552390011;EGR1..3:4.03762219603;ZFP161:3.85897498525;MYFfamily:3.72238252281;AHR_ARNT_ARNT2:3.60719633381;PRRX1,2:3.60231787347;MTE{core}:3.5070044674;ZBTB6:3.4995813093;MED-1{core}:3.49134957469;ATF2:3.41983028033;PAX5:3.33484066133;TFAP2B:3.28787208692;MTF1:3.20330069301;CUX2:3.18364444165;HIC1:3.03591493276;RREB1:2.90746966245;GTF2I:2.85528914277;RFX1:2.75578582496;BREu{core}:2.65442367865;LMO2:2.56514376832;SMAD1..7,9:2.56418654141;SOX2:2.55092294348;MZF1:2.55079802826;JUN:2.51140241107;PRDM1:2.44687624959;HOXA9_MEIS1:2.43163946894;DBP:2.39447073472;SOX5:2.35133070961;TGIF1:2.29426787505;POU6F1:2.28468826749;FOXM1:2.26430255276;SOX{8,9,10}:2.26096432262;NKX3-2:2.25897404107;PATZ1:2.25523746602;MAZ:2.24187310731;NKX2-3_NKX2-5:2.23576673218;GFI1B:2.19320263097;NANOG:2.1228590874;GCM1,2:2.10710847865;OCT4_SOX2{dimer}:2.05240937991;POU5F1:2.02190191928;TFDP1:2.00729649415;SOX17:1.96202527963;MAFB:1.91550101544;EBF1:1.87456271911;NFIX:1.8639572283;LEF1_TCF7_TCF7L1,2:1.85054805811;PAX6:1.84699055602;NRF1:1.75029870078;ESRRA:1.7411672523;RFX2..5_RFXANK_RFXAP:1.6056364993;HOX{A4,D4}:1.50778812105;KLF4:1.48635214393;CDC5L:1.46704151963;ARID5B:1.45943669212;GATA4:1.45469587577;XBP1:1.41509725939;NFIL3:1.4019355824;MYOD1:1.40057260006;FOXQ1:1.38362397137;RORA:1.36870974545;FOX{F1,F2,J1}:1.33037542299;GTF2A1,2:1.30187540655;ZNF238:1.27351640508;EP300:1.25782028889;POU3F1..4:1.25519296037;HMGA1,2:1.25020520474;SP1:1.24037631885;RBPJ:1.18195628762;SREBF1,2:1.12532512431;ZNF423:1.08762950407;SPZ1:1.0040579683;CREB1:0.984092552225;TFAP2{A,C}:0.977340348882;STAT1,3:0.898881581607;ZNF143:0.880785599935;MEF2{A,B,C,D}:0.878601899255;CRX:0.876694525805;ZEB1:0.86707710462;HBP1_HMGB_SSRP1_UBTF:0.834804473031;HMX1:0.831124940012;HAND1,2:0.822880119;ADNP_IRX_SIX_ZHX:0.753365529468;ALX1:0.712062776382;YY1:0.681471168665;FOXP3:0.654105279307;FOXN1:0.596496704022;TLX1..3_NFIC{dimer}:0.58748465931;ZNF384:0.566340434392;ONECUT1,2:0.531443579358;ZIC1..3:0.489075646068;GFI1:0.478810311582;GZF1:0.468273356229;FOX{D1,D2}:0.466579543332;ATF5_CREB3:0.459529618803;FOXP1:0.425882149629;TBX4,5:0.413727534241;ATF4:0.408021453971;XCPE1{core}:0.376435832484;TLX2:0.369277489796;bHLH_family:0.354593080715;BPTF:0.304923626262;PBX1:0.294299161477;AR:0.277217387153;POU1F1:0.266476596136;PAX3,7:0.240736566919;PAX2:0.239208449384;NKX6-1,2:0.230994388927;NR3C1:0.19987295643;T:0.177626758674;MYBL2:0.174167974884;IKZF1:0.153733551546;NFY{A,B,C}:0.069584797894;NFE2L2:0.0563037727802;FOX{I1,J2}:-0.0280116288197;VSX1,2:-0.0525016635179;FOXA2:-0.073196669635;IRF7:-0.0969876812564;IKZF2:-0.12087372508;PDX1:-0.123584788956;NFATC1..3:-0.142369201498;NANOG{mouse}:-0.155129853662;FOXL1:-0.191102205911;PAX4:-0.208108848079;SNAI1..3:-0.211112109532;ZNF148:-0.247502468174;LHX3,4:-0.260935632531;NR5A1,2:-0.269198726215;PAX1,9:-0.274758545949;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.283835218653;NR1H4:-0.299140170996;TEF:-0.337852265801;TFAP4:-0.357302799661;GATA6:-0.363924978056;NFE2:-0.367229261338;HOX{A6,A7,B6,B7}:-0.37899965577;NFE2L1:-0.387415099671;STAT2,4,6:-0.448857375656;SPI1:-0.491765819416;UFEwm:-0.494920796295;PAX8:-0.524245269176;HSF1,2:-0.528061681225;IRF1,2:-0.546597848174;FOXD3:-0.572553916355;HNF1A:-0.589277051948;TFCP2:-0.594099253578;TOPORS:-0.603410684668;ESR1:-0.60364180924;CEBPA,B_DDIT3:-0.604417730685;DMAP1_NCOR{1,2}_SMARC:-0.613261920486;TAL1_TCF{3,4,12}:-0.619614108815;FOXO1,3,4:-0.663489216618;ATF6:-0.668903841928;ETS1,2:-0.717091001593;FOSL2:-0.731199386777;SPIB:-0.788109609104;TP53:-0.871758151798;FOS_FOS{B,L1}_JUN{B,D}:-0.909999298672;ELK1,4_GABP{A,B1}:-0.919413705296;BACH2:-0.939692084438;GLI1..3:-0.984670096915;HNF4A_NR2F1,2:-1.02491039201;TEAD1:-1.06282735309;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09222137232;TBP:-1.14268963593;HLF:-1.18396955507;RUNX1..3:-1.18899221871;NFKB1_REL_RELA:-1.20070024154;PPARG:-1.2183030473;HIF1A:-1.22829514793;RXR{A,B,G}:-1.23559161879;E2F1..5:-1.23887965144;SRF:-1.26481195087;MYB:-1.35529268828;RXRA_VDR{dimer}:-1.40223842519;NKX2-2,8:-1.44206613728;POU2F1..3:-1.53519551888;ZBTB16:-1.53924355055;NKX3-1:-1.54855582463;STAT5{A,B}:-1.57197494954;ELF1,2,4:-1.57473029995;EVI1:-1.58380991934;HES1:-1.59550835561;EN1,2:-1.63742936716;ALX4:-1.64421548313;NKX2-1,4:-1.75991045457;CDX1,2,4:-1.818453423;PITX1..3:-1.8779746085;HOX{A5,B5}:-2.13409455375;AIRE:-2.23132356931;NR6A1:-3.16660871672
|top_motifs=REST:4.48037292993;NHLH1,2:4.35552390011;EGR1..3:4.03762219603;ZFP161:3.85897498525;MYFfamily:3.72238252281;AHR_ARNT_ARNT2:3.60719633381;PRRX1,2:3.60231787347;MTE{core}:3.5070044674;ZBTB6:3.4995813093;MED-1{core}:3.49134957469;ATF2:3.41983028033;PAX5:3.33484066133;TFAP2B:3.28787208692;MTF1:3.20330069301;CUX2:3.18364444165;HIC1:3.03591493276;RREB1:2.90746966245;GTF2I:2.85528914277;RFX1:2.75578582496;BREu{core}:2.65442367865;LMO2:2.56514376832;SMAD1..7,9:2.56418654141;SOX2:2.55092294348;MZF1:2.55079802826;JUN:2.51140241107;PRDM1:2.44687624959;HOXA9_MEIS1:2.43163946894;DBP:2.39447073472;SOX5:2.35133070961;TGIF1:2.29426787505;POU6F1:2.28468826749;FOXM1:2.26430255276;SOX{8,9,10}:2.26096432262;NKX3-2:2.25897404107;PATZ1:2.25523746602;MAZ:2.24187310731;NKX2-3_NKX2-5:2.23576673218;GFI1B:2.19320263097;NANOG:2.1228590874;GCM1,2:2.10710847865;OCT4_SOX2{dimer}:2.05240937991;POU5F1:2.02190191928;TFDP1:2.00729649415;SOX17:1.96202527963;MAFB:1.91550101544;EBF1:1.87456271911;NFIX:1.8639572283;LEF1_TCF7_TCF7L1,2:1.85054805811;PAX6:1.84699055602;NRF1:1.75029870078;ESRRA:1.7411672523;RFX2..5_RFXANK_RFXAP:1.6056364993;HOX{A4,D4}:1.50778812105;KLF4:1.48635214393;CDC5L:1.46704151963;ARID5B:1.45943669212;GATA4:1.45469587577;XBP1:1.41509725939;NFIL3:1.4019355824;MYOD1:1.40057260006;FOXQ1:1.38362397137;RORA:1.36870974545;FOX{F1,F2,J1}:1.33037542299;GTF2A1,2:1.30187540655;ZNF238:1.27351640508;EP300:1.25782028889;POU3F1..4:1.25519296037;HMGA1,2:1.25020520474;SP1:1.24037631885;RBPJ:1.18195628762;SREBF1,2:1.12532512431;ZNF423:1.08762950407;SPZ1:1.0040579683;CREB1:0.984092552225;TFAP2{A,C}:0.977340348882;STAT1,3:0.898881581607;ZNF143:0.880785599935;MEF2{A,B,C,D}:0.878601899255;CRX:0.876694525805;ZEB1:0.86707710462;HBP1_HMGB_SSRP1_UBTF:0.834804473031;HMX1:0.831124940012;HAND1,2:0.822880119;ADNP_IRX_SIX_ZHX:0.753365529468;ALX1:0.712062776382;YY1:0.681471168665;FOXP3:0.654105279307;FOXN1:0.596496704022;TLX1..3_NFIC{dimer}:0.58748465931;ZNF384:0.566340434392;ONECUT1,2:0.531443579358;ZIC1..3:0.489075646068;GFI1:0.478810311582;GZF1:0.468273356229;FOX{D1,D2}:0.466579543332;ATF5_CREB3:0.459529618803;FOXP1:0.425882149629;TBX4,5:0.413727534241;ATF4:0.408021453971;XCPE1{core}:0.376435832484;TLX2:0.369277489796;bHLH_family:0.354593080715;BPTF:0.304923626262;PBX1:0.294299161477;AR:0.277217387153;POU1F1:0.266476596136;PAX3,7:0.240736566919;PAX2:0.239208449384;NKX6-1,2:0.230994388927;NR3C1:0.19987295643;T:0.177626758674;MYBL2:0.174167974884;IKZF1:0.153733551546;NFY{A,B,C}:0.069584797894;NFE2L2:0.0563037727802;FOX{I1,J2}:-0.0280116288197;VSX1,2:-0.0525016635179;FOXA2:-0.073196669635;IRF7:-0.0969876812564;IKZF2:-0.12087372508;PDX1:-0.123584788956;NFATC1..3:-0.142369201498;NANOG{mouse}:-0.155129853662;FOXL1:-0.191102205911;PAX4:-0.208108848079;SNAI1..3:-0.211112109532;ZNF148:-0.247502468174;LHX3,4:-0.260935632531;NR5A1,2:-0.269198726215;PAX1,9:-0.274758545949;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.283835218653;NR1H4:-0.299140170996;TEF:-0.337852265801;TFAP4:-0.357302799661;GATA6:-0.363924978056;NFE2:-0.367229261338;HOX{A6,A7,B6,B7}:-0.37899965577;NFE2L1:-0.387415099671;STAT2,4,6:-0.448857375656;SPI1:-0.491765819416;UFEwm:-0.494920796295;PAX8:-0.524245269176;HSF1,2:-0.528061681225;IRF1,2:-0.546597848174;FOXD3:-0.572553916355;HNF1A:-0.589277051948;TFCP2:-0.594099253578;TOPORS:-0.603410684668;ESR1:-0.60364180924;CEBPA,B_DDIT3:-0.604417730685;DMAP1_NCOR{1,2}_SMARC:-0.613261920486;TAL1_TCF{3,4,12}:-0.619614108815;FOXO1,3,4:-0.663489216618;ATF6:-0.668903841928;ETS1,2:-0.717091001593;FOSL2:-0.731199386777;SPIB:-0.788109609104;TP53:-0.871758151798;FOS_FOS{B,L1}_JUN{B,D}:-0.909999298672;ELK1,4_GABP{A,B1}:-0.919413705296;BACH2:-0.939692084438;GLI1..3:-0.984670096915;HNF4A_NR2F1,2:-1.02491039201;TEAD1:-1.06282735309;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.09222137232;TBP:-1.14268963593;HLF:-1.18396955507;RUNX1..3:-1.18899221871;NFKB1_REL_RELA:-1.20070024154;PPARG:-1.2183030473;HIF1A:-1.22829514793;RXR{A,B,G}:-1.23559161879;E2F1..5:-1.23887965144;SRF:-1.26481195087;MYB:-1.35529268828;RXRA_VDR{dimer}:-1.40223842519;NKX2-2,8:-1.44206613728;POU2F1..3:-1.53519551888;ZBTB16:-1.53924355055;NKX3-1:-1.54855582463;STAT5{A,B}:-1.57197494954;ELF1,2,4:-1.57473029995;EVI1:-1.58380991934;HES1:-1.59550835561;EN1,2:-1.63742936716;ALX4:-1.64421548313;NKX2-1,4:-1.75991045457;CDX1,2,4:-1.818453423;PITX1..3:-1.8779746085;HOX{A5,B5}:-2.13409455375;AIRE:-2.23132356931;NR6A1:-3.16660871672
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10035-101E8;search_select_hide=table117:FF:10035-101E8
}}
}}

Latest revision as of 12:16, 3 June 2020

Name:paracentral gyrus, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10642
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueparacentral gyrus
dev stage22-69 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3040378
catalog numberCat:636574
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005480
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10642 CAGE DRX008699 DRR009571
Accession ID Hg19

Library idBAMCTSS
CNhs10642 DRZ000996 DRZ002381
Accession ID Hg38

Library idBAMCTSS
CNhs10642 DRZ012346 DRZ013731
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.346
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.342
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.055
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.104
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.5
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0284
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.148
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.126
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.168
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.126
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0284
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0448
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0284
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0284
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.133
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.104
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.0284
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.208
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.97
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0945
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.613
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0284
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.055
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.648
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.418
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.118
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.384
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.0801
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.289
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.257
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.57
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.418
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.667
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0284
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.126
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.104
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0284
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.732
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.104
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.148
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.407
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0284
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.206
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0284
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10642

Jaspar motifP-value
MA0002.20.00816
MA0003.10.376
MA0004.10.457
MA0006.10.392
MA0007.10.194
MA0009.10.18
MA0014.10.681
MA0017.10.0047
MA0018.20.0535
MA0019.10.811
MA0024.10.99
MA0025.10.217
MA0027.10.489
MA0028.10.12
MA0029.10.138
MA0030.10.179
MA0031.10.962
MA0035.20.135
MA0038.10.0511
MA0039.20.242
MA0040.10.435
MA0041.10.278
MA0042.10.657
MA0043.10.379
MA0046.10.124
MA0047.20.0881
MA0048.10.103
MA0050.10.00631
MA0051.10.117
MA0052.10.108
MA0055.10.00281
MA0057.10.948
MA0058.10.422
MA0059.10.0842
MA0060.10.227
MA0061.10.00938
MA0062.20.0293
MA0065.24.35621e-4
MA0066.10.0328
MA0067.10.676
MA0068.10.4
MA0069.10.455
MA0070.10.0808
MA0071.10.0374
MA0072.10.447
MA0073.10.354
MA0074.10.194
MA0076.10.292
MA0077.10.191
MA0078.10.873
MA0079.20.4
MA0080.22.79766e-8
MA0081.10.0572
MA0083.10.102
MA0084.10.646
MA0087.10.378
MA0088.10.138
MA0090.10.251
MA0091.10.434
MA0092.10.367
MA0093.10.496
MA0099.21.0312e-10
MA0100.10.7
MA0101.10.00515
MA0102.20.162
MA0103.10.232
MA0104.20.437
MA0105.15.29358e-4
MA0106.10.0343
MA0107.10.00853
MA0108.20.311
MA0111.10.453
MA0112.29.93903e-4
MA0113.10.278
MA0114.10.00388
MA0115.10.404
MA0116.10.0035
MA0117.10.957
MA0119.10.0412
MA0122.10.798
MA0124.10.711
MA0125.10.241
MA0131.10.893
MA0135.10.0222
MA0136.14.27816e-10
MA0137.20.561
MA0138.20.181
MA0139.10.398
MA0140.10.0159
MA0141.10.0158
MA0142.10.969
MA0143.10.939
MA0144.10.304
MA0145.10.23
MA0146.10.0101
MA0147.10.31
MA0148.10.0887
MA0149.10.0168
MA0150.10.00276
MA0152.10.919
MA0153.10.452
MA0154.10.0412
MA0155.10.666
MA0156.12.09071e-5
MA0157.10.6
MA0159.10.00594
MA0160.10.0478
MA0162.10.119
MA0163.13.28329e-6
MA0164.10.731
MA0258.10.0102
MA0259.10.756



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10642

Novel motifP-value
10.033
100.0256
1000.261
1010.896
1020.792
1030.23
1040.147
1050.299
1060.058
1070.129
1080.829
1090.01
110.0149
1100.0367
1110.0667
1120.335
1130.662
1140.0895
1150.951
1160.165
1170.00907
1180.0982
1190.108
120.753
1200.136
1210.674
1220.537
1230.57
1240.0275
1250.164
1260.029
1270.493
1280.171
1290.538
130.00119
1300.519
1310.0669
1320.775
1330.0015
1340.262
1350.162
1360.0145
1370.763
1380.833
1390.0991
140.884
1400.114
1410.26
1420.854
1430.0142
1440.88
1450.0782
1460.624
1470.973
1480.127
1490.279
150.0707
1500.181
1510.649
1520.149
1530.737
1540.616
1550.379
1560.389
1570.401
1580.719
1590.0483
160.0707
1600.184
1610.169
1620.976
1630.83
1640.0168
1650.0443
1660.863
1670.335
1680.72
1690.00757
170.154
180.192
190.204
20.997
200.0904
210.077
220.25
230.452
240.108
250.486
266.70521e-5
270.976
280.703
290.0113
30.0263
300.591
310.89
320.0271
330.0685
340.774
350.476
360.086
370.0451
380.309
390.241
40.922
400.0511
410.425
420.176
430.106
440.0892
450.812
460.0497
470.0621
480.0526
490.131
50.486
500.356
510.526
520.64
530.967
540.484
550.359
560.484
570.243
580.309
590.137
60.561
600.0805
610.0729
620.17
630.158
640.213
650.278
660.303
670.355
680.335
690.404
70.0568
700.0186
710.0086
720.507
730.0486
740.638
750.0292
760.383
770.215
780.00308
790.168
80.0509
800.993
810.544
820.453
830.173
840.661
850.259
860.213
870.00841
880.868
890.535
90.521
900.0355
910.429
920.487
930.601
940.0513
950.0333
960.844
970.759
980.206
990.812



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10642


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000200 (gyrus)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0007190 (paracentral gyrus)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010035 (human paracentral gyrus - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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