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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005192
|DRA_sample_Accession=CAGE@SAMD00005192
|accession_numbers=CAGE;DRX008647;DRR009519;DRZ000944;DRZ002329
|accession_numbers=CAGE;DRX008647;DRR009519;DRZ000944;DRZ002329;DRZ012294;DRZ013679
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|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10041
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10041
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10041
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10041
|name=dura mater, adult, donor1
|name=dura mater, adult, donor1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=NFATC1..3:2.38188447613;HBP1_HMGB_SSRP1_UBTF:2.31912989734;PRDM1:2.27523902456;GCM1,2:2.25893084772;MTF1:2.20272325754;TLX2:2.03642001632;ZNF238:1.99363551287;MYFfamily:1.96256646933;TFAP2{A,C}:1.92747983803;SOX5:1.88568203051;MYBL2:1.87330444204;EP300:1.87256459524;MTE{core}:1.85805643842;STAT2,4,6:1.79542984815;MED-1{core}:1.74834531963;MZF1:1.72684422624;MAZ:1.72066324439;GATA4:1.67514392496;RREB1:1.57309208179;HIC1:1.56562061346;GTF2I:1.45823722713;PATZ1:1.42507325884;TFCP2:1.41884793802;EGR1..3:1.38358043354;IRF7:1.38190099895;TFAP2B:1.36751669607;TLX1..3_NFIC{dimer}:1.36553608332;STAT1,3:1.35465313895;IRF1,2:1.32024008139;IKZF1:1.31426969449;NFIL3:1.26598609011;TBP:1.20091102755;SP1:1.19855095322;POU5F1:1.17519983958;FOXO1,3,4:1.16282960898;SRF:1.13526354229;HMX1:1.12960047049;EBF1:1.10872029336;TFDP1:1.09997292461;FOX{I1,J2}:1.09302089275;AR:1.08639280687;PAX5:1.06894608147;SMAD1..7,9:1.05378867361;BREu{core}:1.05193312962;FOX{D1,D2}:1.00565649013;TGIF1:1.00004222479;ZFP161:0.992270208725;ETS1,2:0.98500669187;FOXA2:0.97513813826;RBPJ:0.969226978262;XBP1:0.965520911749;ZIC1..3:0.936008766908;GFI1B:0.903356427712;TFAP4:0.903167582066;T:0.878216399882;RXRA_VDR{dimer}:0.877751005046;MEF2{A,B,C,D}:0.870988215727;TOPORS:0.86872284404;SPIB:0.818154082409;BPTF:0.748983170142;XCPE1{core}:0.67702438286;ATF2:0.659570704829;SOX{8,9,10}:0.653052968507;ZNF423:0.643789221675;DMAP1_NCOR{1,2}_SMARC:0.605501272876;HAND1,2:0.583865693478;ESR1:0.582753182426;GLI1..3:0.553806494121;SREBF1,2:0.552304170858;PAX1,9:0.548230864598;SPI1:0.545440107065;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543840357385;ELF1,2,4:0.537635595019;ATF6:0.533761509411;TEAD1:0.523305102042;REST:0.522272196645;SPZ1:0.514944691475;GTF2A1,2:0.487522774435;NKX3-2:0.46802998085;ZNF384:0.462822948898;NHLH1,2:0.441948550759;IKZF2:0.427424535958;NR3C1:0.423332556691;KLF4:0.414061365882;NANOG:0.412687273294;RFX2..5_RFXANK_RFXAP:0.403090532059;ALX4:0.396224658222;POU2F1..3:0.393824830432;RUNX1..3:0.375360646824;CEBPA,B_DDIT3:0.367351892722;FOXP1:0.358210457852;MAFB:0.35649696868;NR1H4:0.327876263825;AHR_ARNT_ARNT2:0.327236603579;RFX1:0.322424701049;NANOG{mouse}:0.315798717936;POU6F1:0.281537646624;FOXN1:0.276632110671;ZNF148:0.260554213902;FOXP3:0.259019085128;DBP:0.256233880696;GFI1:0.251599821201;JUN:0.241704986052;SOX2:0.238797084088;GZF1:0.225853671925;HMGA1,2:0.175078314467;RORA:0.147939864467;RXR{A,B,G}:0.132484898072;ALX1:0.111952269625;ATF4:0.0951691582753;PRRX1,2:0.0941553462472;EVI1:0.0412043936842;CDC5L:0.029248441597;GATA6:0.0221981455912;ZBTB6:0.0186109850494;TAL1_TCF{3,4,12}:0.00553906512875;FOX{F1,F2,J1}:-0.00242064133618;CREB1:-0.0209544626105;TBX4,5:-0.0393131875715;ARID5B:-0.0398419895747;VSX1,2:-0.0418044179285;NKX6-1,2:-0.0647426854638;HNF1A:-0.0679249550128;HNF4A_NR2F1,2:-0.0917051524743;HES1:-0.0961850405979;PAX3,7:-0.111682011324;MYOD1:-0.125387038008;ESRRA:-0.140584561866;FOXL1:-0.146264679552;FOSL2:-0.16242546128;NFE2L2:-0.186508648528;NFKB1_REL_RELA:-0.197669641156;CRX:-0.203857591172;PAX2:-0.220340244073;CUX2:-0.225715663763;NFY{A,B,C}:-0.226189186;ADNP_IRX_SIX_ZHX:-0.233899427053;AIRE:-0.234097606729;HLF:-0.237264923539;OCT4_SOX2{dimer}:-0.237313564485;PDX1:-0.242317465221;NKX2-1,4:-0.250483688922;NFE2:-0.2565795346;HIF1A:-0.259288800748;SOX17:-0.272317113169;EN1,2:-0.326223330007;E2F1..5:-0.396357935189;NKX2-3_NKX2-5:-0.42571723225;FOS_FOS{B,L1}_JUN{B,D}:-0.44374599818;PITX1..3:-0.462435485653;SNAI1..3:-0.519078604212;LEF1_TCF7_TCF7L1,2:-0.543728950206;ATF5_CREB3:-0.546533265496;BACH2:-0.556486863097;HOX{A4,D4}:-0.588425855558;bHLH_family:-0.594510358565;LMO2:-0.596927724261;NFIX:-0.604928456514;NFE2L1:-0.632925300177;UFEwm:-0.701028131946;NR6A1:-0.711590189275;ZNF143:-0.71298297248;POU3F1..4:-0.716082844182;TEF:-0.720915691184;HSF1,2:-0.728382677173;NRF1:-0.775760154633;NR5A1,2:-0.779048422289;TP53:-0.785056129828;ZEB1:-0.807590351951;PBX1:-0.82249338144;FOXM1:-0.832677760139;HOX{A5,B5}:-0.842967403548;NKX2-2,8:-0.862424218005;ZBTB16:-0.890344263268;FOXD3:-0.940554233496;HOX{A6,A7,B6,B7}:-0.95932371243;POU1F1:-0.961766062301;CDX1,2,4:-0.993442398379;MYB:-1.0029575786;PAX4:-1.00795709681;YY1:-1.11127265964;NKX3-1:-1.13519940617;PAX8:-1.16534565687;PPARG:-1.2800734735;LHX3,4:-1.33004554049;PAX6:-1.35388547496;ELK1,4_GABP{A,B1}:-1.36284984225;FOXQ1:-1.37364142953;ONECUT1,2:-1.48839982082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69802226449;STAT5{A,B}:-2.02372922527;HOXA9_MEIS1:-2.43930615992
|top_motifs=NFATC1..3:2.38188447613;HBP1_HMGB_SSRP1_UBTF:2.31912989734;PRDM1:2.27523902456;GCM1,2:2.25893084772;MTF1:2.20272325754;TLX2:2.03642001632;ZNF238:1.99363551287;MYFfamily:1.96256646933;TFAP2{A,C}:1.92747983803;SOX5:1.88568203051;MYBL2:1.87330444204;EP300:1.87256459524;MTE{core}:1.85805643842;STAT2,4,6:1.79542984815;MED-1{core}:1.74834531963;MZF1:1.72684422624;MAZ:1.72066324439;GATA4:1.67514392496;RREB1:1.57309208179;HIC1:1.56562061346;GTF2I:1.45823722713;PATZ1:1.42507325884;TFCP2:1.41884793802;EGR1..3:1.38358043354;IRF7:1.38190099895;TFAP2B:1.36751669607;TLX1..3_NFIC{dimer}:1.36553608332;STAT1,3:1.35465313895;IRF1,2:1.32024008139;IKZF1:1.31426969449;NFIL3:1.26598609011;TBP:1.20091102755;SP1:1.19855095322;POU5F1:1.17519983958;FOXO1,3,4:1.16282960898;SRF:1.13526354229;HMX1:1.12960047049;EBF1:1.10872029336;TFDP1:1.09997292461;FOX{I1,J2}:1.09302089275;AR:1.08639280687;PAX5:1.06894608147;SMAD1..7,9:1.05378867361;BREu{core}:1.05193312962;FOX{D1,D2}:1.00565649013;TGIF1:1.00004222479;ZFP161:0.992270208725;ETS1,2:0.98500669187;FOXA2:0.97513813826;RBPJ:0.969226978262;XBP1:0.965520911749;ZIC1..3:0.936008766908;GFI1B:0.903356427712;TFAP4:0.903167582066;T:0.878216399882;RXRA_VDR{dimer}:0.877751005046;MEF2{A,B,C,D}:0.870988215727;TOPORS:0.86872284404;SPIB:0.818154082409;BPTF:0.748983170142;XCPE1{core}:0.67702438286;ATF2:0.659570704829;SOX{8,9,10}:0.653052968507;ZNF423:0.643789221675;DMAP1_NCOR{1,2}_SMARC:0.605501272876;HAND1,2:0.583865693478;ESR1:0.582753182426;GLI1..3:0.553806494121;SREBF1,2:0.552304170858;PAX1,9:0.548230864598;SPI1:0.545440107065;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543840357385;ELF1,2,4:0.537635595019;ATF6:0.533761509411;TEAD1:0.523305102042;REST:0.522272196645;SPZ1:0.514944691475;GTF2A1,2:0.487522774435;NKX3-2:0.46802998085;ZNF384:0.462822948898;NHLH1,2:0.441948550759;IKZF2:0.427424535958;NR3C1:0.423332556691;KLF4:0.414061365882;NANOG:0.412687273294;RFX2..5_RFXANK_RFXAP:0.403090532059;ALX4:0.396224658222;POU2F1..3:0.393824830432;RUNX1..3:0.375360646824;CEBPA,B_DDIT3:0.367351892722;FOXP1:0.358210457852;MAFB:0.35649696868;NR1H4:0.327876263825;AHR_ARNT_ARNT2:0.327236603579;RFX1:0.322424701049;NANOG{mouse}:0.315798717936;POU6F1:0.281537646624;FOXN1:0.276632110671;ZNF148:0.260554213902;FOXP3:0.259019085128;DBP:0.256233880696;GFI1:0.251599821201;JUN:0.241704986052;SOX2:0.238797084088;GZF1:0.225853671925;HMGA1,2:0.175078314467;RORA:0.147939864467;RXR{A,B,G}:0.132484898072;ALX1:0.111952269625;ATF4:0.0951691582753;PRRX1,2:0.0941553462472;EVI1:0.0412043936842;CDC5L:0.029248441597;GATA6:0.0221981455912;ZBTB6:0.0186109850494;TAL1_TCF{3,4,12}:0.00553906512875;FOX{F1,F2,J1}:-0.00242064133618;CREB1:-0.0209544626105;TBX4,5:-0.0393131875715;ARID5B:-0.0398419895747;VSX1,2:-0.0418044179285;NKX6-1,2:-0.0647426854638;HNF1A:-0.0679249550128;HNF4A_NR2F1,2:-0.0917051524743;HES1:-0.0961850405979;PAX3,7:-0.111682011324;MYOD1:-0.125387038008;ESRRA:-0.140584561866;FOXL1:-0.146264679552;FOSL2:-0.16242546128;NFE2L2:-0.186508648528;NFKB1_REL_RELA:-0.197669641156;CRX:-0.203857591172;PAX2:-0.220340244073;CUX2:-0.225715663763;NFY{A,B,C}:-0.226189186;ADNP_IRX_SIX_ZHX:-0.233899427053;AIRE:-0.234097606729;HLF:-0.237264923539;OCT4_SOX2{dimer}:-0.237313564485;PDX1:-0.242317465221;NKX2-1,4:-0.250483688922;NFE2:-0.2565795346;HIF1A:-0.259288800748;SOX17:-0.272317113169;EN1,2:-0.326223330007;E2F1..5:-0.396357935189;NKX2-3_NKX2-5:-0.42571723225;FOS_FOS{B,L1}_JUN{B,D}:-0.44374599818;PITX1..3:-0.462435485653;SNAI1..3:-0.519078604212;LEF1_TCF7_TCF7L1,2:-0.543728950206;ATF5_CREB3:-0.546533265496;BACH2:-0.556486863097;HOX{A4,D4}:-0.588425855558;bHLH_family:-0.594510358565;LMO2:-0.596927724261;NFIX:-0.604928456514;NFE2L1:-0.632925300177;UFEwm:-0.701028131946;NR6A1:-0.711590189275;ZNF143:-0.71298297248;POU3F1..4:-0.716082844182;TEF:-0.720915691184;HSF1,2:-0.728382677173;NRF1:-0.775760154633;NR5A1,2:-0.779048422289;TP53:-0.785056129828;ZEB1:-0.807590351951;PBX1:-0.82249338144;FOXM1:-0.832677760139;HOX{A5,B5}:-0.842967403548;NKX2-2,8:-0.862424218005;ZBTB16:-0.890344263268;FOXD3:-0.940554233496;HOX{A6,A7,B6,B7}:-0.95932371243;POU1F1:-0.961766062301;CDX1,2,4:-0.993442398379;MYB:-1.0029575786;PAX4:-1.00795709681;YY1:-1.11127265964;NKX3-1:-1.13519940617;PAX8:-1.16534565687;PPARG:-1.2800734735;LHX3,4:-1.33004554049;PAX6:-1.35388547496;ELK1,4_GABP{A,B1}:-1.36284984225;FOXQ1:-1.37364142953;ONECUT1,2:-1.48839982082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69802226449;STAT5{A,B}:-2.02372922527;HOXA9_MEIS1:-2.43930615992
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10041-101F5;search_select_hide=table117:FF:10041-101F5
}}
}}

Latest revision as of 12:16, 3 June 2020

Name:dura mater, adult, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10648
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuedura mater
dev stage59 years old adult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number3040808
catalog numberCat:636588
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005192
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10648 CAGE DRX008647 DRR009519
Accession ID Hg19

Library idBAMCTSS
CNhs10648 DRZ000944 DRZ002329
Accession ID Hg38

Library idBAMCTSS
CNhs10648 DRZ012294 DRZ013679
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0266
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.085
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0266
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0272
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0266
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.0517
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0517
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0266
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0266
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.367
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.119
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.1
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0574
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.0151
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.29
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.194
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0266
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.134
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.378
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0517
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0266
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0883
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.0266
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.101
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.0266
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.573
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0266
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.14
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0979
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0266
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.112
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0979
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.446
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.0266
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.178
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.442
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.0517
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0266
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.207
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0457
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0517
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0511
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0517
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0266
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0979
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0254
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.109
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.128
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.33
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.119
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0754
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.213
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.498
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0517
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0754
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.54
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.119
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0498
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.26
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.0517
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.0266
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.0266
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0266
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.0517
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.229
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.117
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0266
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.237
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0266
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.0266
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0979
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.0266
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0266
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0266
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10648

Jaspar motifP-value
MA0002.20.118
MA0003.10.864
MA0004.10.22
MA0006.10.747
MA0007.10.31
MA0009.10.202
MA0014.10.107
MA0017.10.193
MA0018.20.783
MA0019.10.347
MA0024.10.56
MA0025.10.18
MA0027.10.945
MA0028.14.16716e-4
MA0029.10.736
MA0030.10.102
MA0031.10.414
MA0035.20.14
MA0038.10.0807
MA0039.20.353
MA0040.10.695
MA0041.10.717
MA0042.10.489
MA0043.10.598
MA0046.10.863
MA0047.20.465
MA0048.10.195
MA0050.12.40134e-8
MA0051.10.00622
MA0052.17.88043e-4
MA0055.11.96231e-4
MA0057.10.858
MA0058.10.106
MA0059.10.00259
MA0060.10.419
MA0061.10.0517
MA0062.26.57212e-4
MA0065.20.00267
MA0066.10.00671
MA0067.10.396
MA0068.16.0929e-4
MA0069.10.864
MA0070.10.0988
MA0071.10.0472
MA0072.10.11
MA0073.10.666
MA0074.10.168
MA0076.10.00254
MA0077.10.567
MA0078.10.123
MA0079.20.337
MA0080.29.00629e-6
MA0081.10.381
MA0083.10.151
MA0084.10.99
MA0087.10.186
MA0088.10.00588
MA0090.10.664
MA0091.10.601
MA0092.10.801
MA0093.10.2
MA0099.22.78391e-9
MA0100.10.395
MA0101.10.292
MA0102.20.0184
MA0103.10.00691
MA0104.20.0105
MA0105.12.29009e-5
MA0106.10.00424
MA0107.10.505
MA0108.21.34009e-10
MA0111.10.529
MA0112.20.00688
MA0113.10.518
MA0114.10.0257
MA0115.10.0172
MA0116.10.00659
MA0117.10.609
MA0119.10.157
MA0122.10.795
MA0124.10.529
MA0125.10.467
MA0131.10.754
MA0135.10.0667
MA0136.10.0297
MA0137.23.66188e-4
MA0138.20.75
MA0139.10.0214
MA0140.10.364
MA0141.10.00542
MA0142.10.239
MA0143.10.876
MA0144.10.189
MA0145.10.994
MA0146.10.0666
MA0147.10.00452
MA0148.10.959
MA0149.10.0154
MA0150.10.007
MA0152.10.0336
MA0153.10.832
MA0154.10.0456
MA0155.10.853
MA0156.10.849
MA0157.10.719
MA0159.10.0306
MA0160.10.018
MA0162.10.181
MA0163.11.82324e-7
MA0164.10.292
MA0258.10.0176
MA0259.10.11



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10648

Novel motifP-value
10.00557
100.0361
1000.0746
1010.461
1020.123
1030.0531
1040.844
1050.946
1060.829
1070.31
1080.443
1090.0165
110.051
1100.0806
1110.0226
1120.465
1130.0313
1140.0756
1150.589
1160.328
1170.00396
1180.0182
1190.271
120.72
1200.0245
1210.828
1220.674
1230.134
1240.398
1250.0763
1260.381
1270.645
1280.732
1290.0145
130.0299
1300.393
1310.279
1320.56
1332.27882e-4
1340.0842
1350.0413
1360.0939
1370.461
1380.993
1390.148
140.927
1400.0843
1410.238
1420.52
1430.0256
1440.77
1450.509
1460.821
1470.811
1480.26
1490.821
150.0335
1500.369
1510.581
1520.862
1530.963
1540.968
1550.344
1560.539
1570.858
1580.996
1590.402
160.0288
1600.174
1610.27
1620.965
1630.377
1640.012
1650.442
1660.505
1670.0127
1680.681
1690.0749
170.592
180.0831
190.926
20.496
200.0989
210.314
220.704
230.708
240.353
250.344
260.00853
270.99
280.59
290.00509
30.179
300.205
310.729
320.195
330.181
340.322
350.207
360.0561
370.0496
380.497
390.868
40.33
400.0741
410.209
420.353
430.167
440.104
450.614
460.101
470.0291
480.132
490.0853
50.393
500.655
510.618
520.324
530.723
540.7
550.837
560.57
570.0354
580.425
590.539
60.831
600.995
610.349
620.306
630.311
640.117
650.603
660.184
670.254
680.834
690.406
70.308
700.00665
710.0157
720.962
730.175
740.783
750.00693
760.112
770.86
780.0145
790.0986
80.138
800.0653
810.753
820.197
830.851
840.955
850.9
860.403
870.0123
880.761
890.304
90.446
900.0455
910.612
920.951
930.194
940.0643
950.0339
960.832
970.707
980.217
990.71



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10648


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002363 (dura mater)
0002360 (meninx)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000094 (membrane organ)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0010743 (meningeal cluster)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010041 (human dura mater - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010115 (future dura mater)
UBERON:0010316 (germ layer / neural crest)

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