FF:10043-101F7: Difference between revisions

Latest revision as of 12:16, 3 June 2020

Name:	thymus, fetal, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10650
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thymus
dev stage	22-34 weeks fetus
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	5040223
catalog number	Cat:636586
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005030

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10650		CAGE		DRX008746		DRR009618

Accession ID Hg19

Library id		BAM		CTSS
CNhs10650		DRZ001043		DRZ002428

Accession ID Hg38

Library id		BAM		CTSS
CNhs10650		DRZ012393		DRZ013778

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005030

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10057		RNA-Seq		DRX057115		DRR062874

Accession ID Hg19

Library id		BAM		CTSS
RDhi10057		DRZ007950

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0262
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.145
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.00647
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.472
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0508
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0262
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0262
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.119
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0.385
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0262
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0956
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0262
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.175
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.268
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.43
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0262
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.484
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.357
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.175
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0262
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0262
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0262
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0.0262
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.182
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0262
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.137
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.117
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0508
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.0262
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0742
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.691
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.532
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0852
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0385
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0.0262
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0742
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0.0262
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.21
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0665
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.338
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0508
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.0262
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0.707
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.037
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.311
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.117
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0262
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0262
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.134
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0508
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.193
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0508
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.137
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0385
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0.0262
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0742
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.725
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0262
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0.0262
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0963
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0262
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0262
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0508
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10650

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.446
MA0003.1	MA0003.1	0.598
MA0004.1	MA0004.1	0.665
MA0006.1	MA0006.1	0.903
MA0007.1	MA0007.1	0.684
MA0009.1	MA0009.1	0.849
MA0014.1	MA0014.1	0.974
MA0017.1	MA0017.1	0.0864
MA0018.2	MA0018.2	0.0222
MA0019.1	MA0019.1	0.28
MA0024.1	MA0024.1	0.00401
MA0025.1	MA0025.1	0.0408
MA0027.1	MA0027.1	0.841
MA0028.1	MA0028.1	0.0197
MA0029.1	MA0029.1	0.676
MA0030.1	MA0030.1	0.0158
MA0031.1	MA0031.1	0.00161
MA0035.2	MA0035.2	0.0707
MA0038.1	MA0038.1	0.0201
MA0039.2	MA0039.2	0.0219
MA0040.1	MA0040.1	0.948
MA0041.1	MA0041.1	0.892
MA0042.1	MA0042.1	0.863
MA0043.1	MA0043.1	0.393
MA0046.1	MA0046.1	0.69
MA0047.2	MA0047.2	0.206
MA0048.1	MA0048.1	0.0146
MA0050.1	MA0050.1	2.50626e-5
MA0051.1	MA0051.1	0.0925
MA0052.1	MA0052.1	0.227
MA0055.1	MA0055.1	0.0322
MA0057.1	MA0057.1	0.256
MA0058.1	MA0058.1	0.888
MA0059.1	MA0059.1	0.0166
MA0060.1	MA0060.1	7.5864e-17
MA0061.1	MA0061.1	0.587
MA0062.2	MA0062.2	6.47524e-8
MA0065.2	MA0065.2	0.00429
MA0066.1	MA0066.1	0.0393
MA0067.1	MA0067.1	0.856
MA0068.1	MA0068.1	0.00437
MA0069.1	MA0069.1	0.795
MA0070.1	MA0070.1	0.131
MA0071.1	MA0071.1	0.175
MA0072.1	MA0072.1	0.561
MA0073.1	MA0073.1	0.833
MA0074.1	MA0074.1	0.0295
MA0076.1	MA0076.1	1.19081e-4
MA0077.1	MA0077.1	0.831
MA0078.1	MA0078.1	0.18
MA0079.2	MA0079.2	0.0327
MA0080.2	MA0080.2	7.76745e-10
MA0081.1	MA0081.1	0.00712
MA0083.1	MA0083.1	0.916
MA0084.1	MA0084.1	0.85
MA0087.1	MA0087.1	0.72
MA0088.1	MA0088.1	0.4
MA0090.1	MA0090.1	0.0121
MA0091.1	MA0091.1	0.702
MA0092.1	MA0092.1	0.301
MA0093.1	MA0093.1	0.751
MA0099.2	MA0099.2	1.39536e-11
MA0100.1	MA0100.1	0.0258
MA0101.1	MA0101.1	0.928
MA0102.2	MA0102.2	0.843
MA0103.1	MA0103.1	0.192
MA0104.2	MA0104.2	0.43
MA0105.1	MA0105.1	0.0259
MA0106.1	MA0106.1	0.0412
MA0107.1	MA0107.1	0.674
MA0108.2	MA0108.2	1.48202e-15
MA0111.1	MA0111.1	0.837
MA0112.2	MA0112.2	6.33888e-6
MA0113.1	MA0113.1	0.834
MA0114.1	MA0114.1	0.0124
MA0115.1	MA0115.1	0.274
MA0116.1	MA0116.1	0.0971
MA0117.1	MA0117.1	0.89
MA0119.1	MA0119.1	0.0185
MA0122.1	MA0122.1	0.573
MA0124.1	MA0124.1	0.325
MA0125.1	MA0125.1	0.371
MA0131.1	MA0131.1	0.135
MA0135.1	MA0135.1	0.466
MA0136.1	MA0136.1	6.92296e-12
MA0137.2	MA0137.2	0.036
MA0138.2	MA0138.2	0.311
MA0139.1	MA0139.1	0.636
MA0140.1	MA0140.1	0.255
MA0141.1	MA0141.1	8.22725e-5
MA0142.1	MA0142.1	0.0801
MA0143.1	MA0143.1	0.0229
MA0144.1	MA0144.1	0.792
MA0145.1	MA0145.1	0.131
MA0146.1	MA0146.1	0.215
MA0147.1	MA0147.1	0.245
MA0148.1	MA0148.1	0.856
MA0149.1	MA0149.1	0.0264
MA0150.1	MA0150.1	7.91797e-4
MA0152.1	MA0152.1	0.211
MA0153.1	MA0153.1	0.885
MA0154.1	MA0154.1	0.191
MA0155.1	MA0155.1	0.953
MA0156.1	MA0156.1	5.12628e-11
MA0157.1	MA0157.1	0.0562
MA0159.1	MA0159.1	0.0307
MA0160.1	MA0160.1	0.0334
MA0162.1	MA0162.1	0.0923
MA0163.1	MA0163.1	3.20058e-4
MA0164.1	MA0164.1	0.47
MA0258.1	MA0258.1	0.00244
MA0259.1	MA0259.1	0.712

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10650

Novel motif	Logo	P-value
1	1	0.0341
10	10	0.104
100	100	0.346
101	101	0.8
102	102	0.991
103	103	0.263
104	104	0.864
105	105	0.444
106	106	0.00905
107	107	0.055
108	108	0.213
109	109	0.0816
11	11	0.143
110	110	0.0992
111	111	0.0277
112	112	0.139
113	113	0.149
114	114	4.04424e-4
115	115	0.131
116	116	0.137
117	117	0.681
118	118	0.116
119	119	0.115
12	12	0.739
120	120	0.348
121	121	0.133
122	122	0.616
123	123	0.699
124	124	0.318
125	125	0.406
126	126	0.571
127	127	0.806
128	128	0.0652
129	129	0.819
13	13	0.248
130	130	0.0247
131	131	0.745
132	132	0.768
133	133	0.592
134	134	0.764
135	135	0.0915
136	136	0.739
137	137	0.307
138	138	0.585
139	139	0.0822
14	14	0.664
140	140	0.0178
141	141	0.129
142	142	0.088
143	143	0.784
144	144	0.429
145	145	0.431
146	146	0.562
147	147	0.242
148	148	0.079
149	149	0.0713
15	15	0.16
150	150	0.359
151	151	0.538
152	152	0.0355
153	153	0.978
154	154	0.438
155	155	0.415
156	156	0.304
157	157	0.324
158	158	0.966
159	159	0.882
16	16	0.0759
160	160	0.0982
161	161	0.74
162	162	0.365
163	163	0.636
164	164	0.0182
165	165	0.972
166	166	0.655
167	167	0.0788
168	168	0.454
169	169	0.00121
17	17	0.152
18	18	0.0468
19	19	0.025
2	2	0.786
20	20	0.236
21	21	0.608
22	22	0.152
23	23	0.293
24	24	0.856
25	25	0.694
26	26	0.122
27	27	0.542
28	28	0.741
29	29	0.291
3	3	0.221
30	30	0.505
31	31	0.339
32	32	0.00731
33	33	0.38
34	34	0.974
35	35	0.246
36	36	0.103
37	37	0.0382
38	38	0.508
39	39	0.285
4	4	0.938
40	40	0.281
41	41	0.435
42	42	0.87
43	43	0.229
44	44	0.483
45	45	0.847
46	46	0.0755
47	47	0.296
48	48	0.475
49	49	0.289
5	5	0.314
50	50	0.959
51	51	0.452
52	52	0.51
53	53	0.646
54	54	0.426
55	55	0.234
56	56	0.721
57	57	0.0544
58	58	0.888
59	59	0.182
6	6	0.626
60	60	0.352
61	61	0.854
62	62	0.553
63	63	0.288
64	64	0.245
65	65	0.261
66	66	0.198
67	67	0.166
68	68	0.448
69	69	0.508
7	7	0.862
70	70	0.0119
71	71	0.0636
72	72	0.49
73	73	0.015
74	74	0.574
75	75	0.231
76	76	0.19
77	77	0.0416
78	78	0.663
79	79	0.289
8	8	0.00402
80	80	0.0055
81	81	0.304
82	82	0.247
83	83	0.865
84	84	0.337
85	85	0.0184
86	86	0.914
87	87	0.375
88	88	0.323
89	89	0.00868
9	9	0.933
90	90	0.0485
91	91	0.563
92	92	0.158
93	93	0.82
94	94	0.246
95	95	0.184
96	96	0.813
97	97	0.624
98	98	0.0718
99	99	0.141

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10650

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010043 human thymus - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002370 (thymus)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0004177 (hemopoietic organ)
0005057 (immune organ)
0002530 (gland)
0005058 (hemolymphoid system gland)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0002390 (hematopoietic system)
0000949 (endocrine system)
0002193 (hemolymphoid system)
0002405 (immune system)
0009113 (thymic region)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010043 (human thymus - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002370,UBERON:0000483,UBERON:0002530,UBERON:0006562,UBERON:0000974,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0002368,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005911,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003929,UBERON:0000072,UBERON:0004807,UBERON:0003104,UBERON:0004177,UBERON:0005057,UBERON:0005058,UBERON:0001048,UBERON:0000925,UBERON:0003408,UBERON:0006598,UBERON:0003351,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0000065,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0002390,UBERON:0007026,UBERON:0001041,UBERON:0000949,UBERON:0001557,UBERON:0001042,UBERON:0002193,UBERON:0002405,UBERON:0009113,UBERON:0008814,UBERON:0009142,UBERON:0003081,UBERON:0003295,UBERON:0009722,UBERON:0006595,UBERON:0006603,UBERON:0009145,UBERON:0005562,UBERON:0003061,UBERON:0007690
+|DRA_sample_Accession=CAGE@SAMD00005030
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005030
+|accession_numbers=CAGE;DRX008746;DRR009618;DRZ001043;DRZ002428;DRZ012393;DRZ013778
+|accession_numbers_RNASeq=RNA-Seq;DRX057115;DRR062874;DRZ007950
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002370,UBERON:0000479,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010043
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.77!594.12!TCF7;;chr4:109090075..109090095,-!p2@LEF1!2.33!214.53!LEF1;;chr4:109087445..109087463,-!p1@LEF1!2.26!180.51!LEF1;;chr3:18486354..18486377,-!p2@SATB1!2.17!180.89!SATB1;;chr1:151798546..151798590,-!p2@RORC!2.03!105.09!RORC;;chr3:18480217..18480239,-!p3@SATB1!2.00!98.45!SATB1;;chr8:60031619..60031676,-!p1@TOX!1.97!194.42!TOX;;chr5:133450365..133450444,+!p1@TCF7!1.86!306.77!TCF7;;chr17:37934365..37934387,-!p2@IKZF3!1.85!69.96!IKZF3;;chr3:63953435..63953499,+!p1@ATXN7!1.83!66.92!ATXN7;;chr5:133451347..133451358,+!p3@TCF7!1.82!65.12!TCF7;;chr20:21686317..21686350,+!p1@PAX1!1.79!60.83!PAX1;;chr7:50343634..50343717,+!p2@IKZF1!1.76!56.86!IKZF1;;chr16:85932760..85932775,+!p1@IRF8!1.72!51.65!IRF8;;chr3:18487057..18487105,-!p4@SATB1!1.68!46.87!SATB1;;chr2:214015111..214015179,-!p1@IKZF2!1.65!76.60!IKZF2;;chr10:8096631..8096660,+!p1@GATA3!1.64!51.65!GATA3;;chr2:100759010..100759035,-!p1@AFF3!1.63!41.90!AFF3;;chr6:135502501..135502546,+!p1@MYB!1.62!48.60!MYB;;chrY:21906594..21906622,-!p1@KDM5D!1.61!39.48!KDM5D;;chr10:8096772..8096787,+!p2@GATA3!1.60!45.19!GATA3;;chr14:37131058..37131139,+!p1@PAX9!1.60!38.67!PAX9;;chr21:36421535..36421610,-!p2@RUNX1!1.59!129.74!RUNX1;;chr9:117150254..117150271,-!p1@AKNA!1.58!98.70!AKNA;;chr6:135502408..135502459,+!p2@MYB!1.58!42.65!MYB;;chr16:68119324..68119364,+!p1@NFATC3!1.57!155.75!NFATC3;;chr9:77112244..77112262,+!p1@RORB!1.55!38.30!RORB;;chr4:109090054..109090073,-!p7@LEF1!1.54!33.83!LEF1;;chr2:214013461..214013517,-!p6@IKZF2!1.52!32.34!IKZF2;;chr11:47400078..47400106,-!p1@SPI1!1.51!31.35!SPI1;;chr7:50344251..50344288,+!p3@IKZF1!1.51!31.29!IKZF1;;chr6:91006518..91006570,-!p1@BACH2!1.50!69.28!BACH2;;chr4:109087906..109087928,-!p12@LEF1!1.50!30.85!LEF1;;chr2:100759037..100759058,-!p2@AFF3!1.48!29.30!AFF3;;chr2:214014959..214015006,-!p4@IKZF2!1.47!28.74!IKZF2;;chr7:50348268..50348366,+!p4@IKZF1!1.47!28.43!IKZF1;;chr3:189507432..189507459,+!p1@TP63!1.46!28.00!TP63;;chr1:92949331..92949377,-!p2@GFI1!1.46!28.00!GFI1;;chr4:109089901..109089930,-!p3@LEF1!1.45!27.31!LEF1;;chr13:41593425..41593480,-!p1@ELF1!1.44!161.33!ELF1;;chr3:71355163..71355209,-!p5@FOXP1!1.44!36.44!FOXP1;;chr3:141868293..141868355,-!p2@TFDP2!1.43!218.94!TFDP2;;chr15:57210961..57211012,+!p3@TCF12!1.43!81.38!TCF12;;chr6:391743..391759,+!p1@IRF4!1.43!26.13!IRF4;;chr1:23857698..23857733,-!p1@E2F2!1.42!46.06!E2F2;;chr3:111314186..111314204,-!p1@ZBED2!1.41!24.83!ZBED2;;chr2:68592406..68592424,+!p1@PLEK!1.40!24.33!PLEK;;chr3:18480173..18480189,-!p6@SATB1!1.40!24.15!SATB1;;chr2:60778035..60778060,-!p4@BCL11A!1.39!27.87!BCL11A;;chr11:128392273..128392308,-!p2@ETS1!1.35!88.33!ETS1;;chr7:50344289..50344323,+!p1@IKZF1!1.35!21.54!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.86!HIF3A;;chr2:42795745..42795824,+!p1@MTA3!1.33!182.00!MTA3;;chr4:109090106..109090124,-!p10@LEF1!1.32!20.05!LEF1;;chr7:50343895..50343936,+!p5@IKZF1!1.32!19.86!IKZF1;;chr4:109086321..109086357,-!p16@LEF1!1.31!19.37!LEF1;;chr12:103351444..103351461,+!p1@ASCL1!1.26!17.01!ASCL1;;chr6:91006575..91006602,-!p2@BACH2!1.25!24.64!BACH2;;chr11:128392309..128392350,-!p3@ETS1!1.24!38.36!ETS1;;chr1:209979467..209979494,-!p1@IRF6!1.24!18.50!IRF6;;chr19:50922187..50922204,+!p1@SPIB!1.24!16.33!SPIB;;chr21:47063625..47063658,+!p1@PCBP3!1.23!69.09!PCBP3;;chr13:72441315..72441454,-!p1@DACH1!1.23!31.72!DACH1;;chr2:60781201..60781258,-!p3@BCL11A!1.23!15.89!BCL11A;;chr4:109086403..109086421,-!p19@LEF1!1.23!15.83!LEF1;;chr3:114819124..114819200,-!p3@ZBTB20!1.20!34.02!ZBTB20;;chr2:100758991..100759009,-!p3@AFF3!1.20!14.96!AFF3;;chr4:109089996..109090012,-!p5@LEF1!1.19!14.65!LEF1;;chr9:1050331..1050363,+!p1@DMRT2!1.19!14.65!DMRT2;;chr20:21686290..21686311,+!p2@PAX1!1.19!14.34!PAX1;;chr3:141747459..141747475,-!p1@TFDP2!1.18!115.71!TFDP2;;chr3:71179699..71179744,-!p2@FOXP1!1.18!104.78!FOXP1;;chr2:70142232..70142251,+!p1@MXD1!1.18!79.39!MXD1;;chr4:109088940..109089037,-!p4@LEF1!1.18!14.15!LEF1;;chr17:80797886..80797906,-!p1@ZNF750!1.17!13.78!ZNF750;;chr20:42543441..42543497,+!p1@TOX2!1.15!59.22!TOX2;;chr9:3525867..3525902,-!p3@RFX3!1.15!45.44!RFX3;;chr4:109087885..109087899,-!p23@LEF1!1.15!12.97!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.91!IKZF3;;chr8:60031563..60031574,-!p7@TOX!1.13!12.54!TOX;;chr2:214015343..214015366,-!p3@IKZF2!1.13!12.41!IKZF2;;chr7:44143925..44143970,+!p1@AEBP1!1.12!269.96!AEBP1;;chr16:79634624..79634642,-!p1@MAF!1.12!47.43!MAF;;chr21:39870339..39870443,-!p1@ERG!1.12!12.17!ERG;;chr20:62680984..62680999,-!p1@SOX18!1.11!15.95!SOX18;;chr10:8095593..8095625,+!p3@GATA3!1.10!13.72!GATA3;;chr15:57025732..57025743,-!p6@ZNF280D!1.10!11.67!ZNF280D;;chr11:111249993..111250006,-!p1@POU2AF1!1.10!11.48!POU2AF1;;chr6:135502472..135502489,+!p3@MYB!1.08!10.93!MYB;;chr17:42295777..42295816,-!p7@UBTF!1.07!13.10!UBTF;;chr19:19729477..19729542,-!p1@PBX4!1.06!22.41!PBX4;;chr5:71803177..71803255,-!p1@ZNF366!1.06!10.49!ZNF366;;chr1:92951607..92951661,-!p1@GFI1!1.06!10.43!GFI1;;chr3:141747441..141747452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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002370;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004177;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009722
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520fetal%252c%2520pool1.CNhs10650.10043-101F7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10043-101F7
 |is_a=EFO:0002091;;FF:0010043
 |is_obsolete=
+|library_id=CNhs10650
+|library_id_phase_based=2:CNhs10650
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10043
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10043
 |name=thymus, fetal, pool1
 |namespace=FANTOM5
@@ Line 44: / Line 63: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10650,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:636586
@@ Line 58: / Line 80: @@
 |rna_tube_id=101F7
 |rna_weight_ug=50
+|rnaseq_library_id=RDhi10057
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 104: @@
 |top_motifs=TLX2:3.72434949324;NFY{A,B,C}:2.48460326807;TBP:2.33138856115;FOXO1,3,4:2.12581723215;ELF1,2,4:2.09301107077;LMO2:1.92040451403;RORA:1.76651908811;ETS1,2:1.7655837006;SP1:1.72438490764;TGIF1:1.70450495212;STAT1,3:1.56540712616;RUNX1..3:1.52070379162;HBP1_HMGB_SSRP1_UBTF:1.50467093538;SPZ1:1.46761157441;GATA6:1.45013710444;PATZ1:1.44984397345;SMAD1..7,9:1.41334943326;EP300:1.39791393415;BREu{core}:1.38496431209;BPTF:1.35758200096;DMAP1_NCOR{1,2}_SMARC:1.31781949541;MAZ:1.2431115645;FOXN1:1.19145459492;SPI1:1.18834342643;NRF1:1.1594112192;T:1.15424038537;FOX{D1,D2}:1.15193096807;ZEB1:1.15015904149;SREBF1,2:1.1471074969;RREB1:1.14424639408;MYOD1:1.14264060375;RBPJ:1.13767925905;PAX3,7:1.12209102925;ZNF238:1.10241015425;POU2F1..3:1.09792889858;MZF1:1.07317142554;SNAI1..3:1.06081162261;ZNF143:1.0469299084;IRF1,2:1.0375772187;SPIB:1.02668413479;PBX1:1.01023761605;XCPE1{core}:0.949408194425;GFI1:0.926749695116;RFX2..5_RFXANK_RFXAP:0.917330093574;SOX{8,9,10}:0.911423787652;PAX6:0.84527733159;MYB:0.832049544933;E2F1..5:0.802429995976;SOX5:0.788657082322;FOXA2:0.784720590206;ATF2:0.763798864975;IRF7:0.760398845079;ZNF148:0.743408040643;MYFfamily:0.702929493118;SOX2:0.70223757977;IKZF2:0.680513531973;TFAP4:0.677222812784;HSF1,2:0.66454150196;FOX{F1,F2,J1}:0.628922021834;JUN:0.627735479491;ATF4:0.626874206961;ELK1,4_GABP{A,B1}:0.621207899298;LEF1_TCF7_TCF7L1,2:0.583836159519;AR:0.569714570979;CREB1:0.569652484073;MED-1{core}:0.526049905955;NKX6-1,2:0.520865670607;EGR1..3:0.517457883394;MTE{core}:0.465328346349;FOXP3:0.433311577908;FOXP1:0.427021403247;ZNF384:0.406784963034;NFATC1..3:0.367880527024;ATF5_CREB3:0.317826090252;ZFP161:0.294970997477;NKX2-1,4:0.27489026312;NFKB1_REL_RELA:0.259116626757;EN1,2:0.239081888409;NANOG{mouse}:0.230013354698;MYBL2:0.213785034952;SRF:0.201650315399;NKX2-3_NKX2-5:0.175732559082;POU5F1:0.149553903844;AIRE:0.146831809487;DBP:0.133822912026;NHLH1,2:0.121439796429;TOPORS:0.0932596687468;CDX1,2,4:0.0929889751152;PRDM1:0.0862775040755;GTF2I:0.0166192457498;GTF2A1,2:0.0105907340686;TP53:0.00064029286149;PAX2:-0.00771868797615;HAND1,2:-0.0284266768699;POU3F1..4:-0.044783694041;CUX2:-0.0631808509699;MAFB:-0.0638543461061;MEF2{A,B,C,D}:-0.0722293048209;TBX4,5:-0.106505413647;TFCP2:-0.117838741344;GFI1B:-0.122488604999;CRX:-0.134416006425;GATA4:-0.13570190984;STAT2,4,6:-0.137600593193;HIC1:-0.152158403777;ZBTB16:-0.152192590748;NANOG:-0.166595338429;TAL1_TCF{3,4,12}:-0.16929802603;VSX1,2:-0.188819391994;HMX1:-0.221755681987;FOX{I1,J2}:-0.225020601801;MTF1:-0.244092923252;FOXQ1:-0.244347018833;TFAP2B:-0.266014245235;HNF1A:-0.287124287167;NR3C1:-0.292627283615;PAX5:-0.294895731515;CDC5L:-0.308614497794;GCM1,2:-0.31096848847;HNF4A_NR2F1,2:-0.313423392352;TFDP1:-0.321988333387;TFAP2{A,C}:-0.324783908519;CEBPA,B_DDIT3:-0.324795495622;GLI1..3:-0.353902335581;POU1F1:-0.410714809971;REST:-0.428582639592;SOX17:-0.443704224311;POU6F1:-0.444843581672;NR5A1,2:-0.446868037269;ATF6:-0.452166778689;ARID5B:-0.465285556076;HES1:-0.46580142948;HOXA9_MEIS1:-0.478698946475;KLF4:-0.490179002296;PAX4:-0.492860490983;ESR1:-0.496029486528;OCT4_SOX2{dimer}:-0.499334814591;FOXM1:-0.500170193507;HIF1A:-0.536310139181;PITX1..3:-0.543307857805;NFIL3:-0.556315568032;HMGA1,2:-0.605094721728;YY1:-0.610302500839;AHR_ARNT_ARNT2:-0.61689651681;ZIC1..3:-0.6192413823;TEAD1:-0.634529809276;RFX1:-0.675730226368;PRRX1,2:-0.678191237823;EVI1:-0.688910151314;HLF:-0.704597382857;GZF1:-0.705667176951;bHLH_family:-0.720868215138;FOS_FOS{B,L1}_JUN{B,D}:-0.721371472125;EBF1:-0.757545217246;FOSL2:-0.821869362927;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.825482217421;TLX1..3_NFIC{dimer}:-0.839500626911;BACH2:-0.853158164317;FOXD3:-0.891055804651;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.929658327526;HOX{A6,A7,B6,B7}:-0.931482665126;FOXL1:-0.947075730671;NKX3-2:-0.956809982628;ALX4:-0.972390006854;NFE2:-0.980460419577;RXR{A,B,G}:-1.00122453146;NFE2L2:-1.0079141577;ZNF423:-1.136475041;PAX1,9:-1.16188149252;ALX1:-1.19118903963;NFIX:-1.22215824774;STAT5{A,B}:-1.32937678185;PAX8:-1.34603391875;ADNP_IRX_SIX_ZHX:-1.35313636783;NR1H4:-1.3549257673;LHX3,4:-1.39091337443;NKX3-1:-1.40035194171;HOX{A4,D4}:-1.43551084981;ZBTB6:-1.43703734946;XBP1:-1.46908294541;NKX2-2,8:-1.4790333537;UFEwm:-1.49464474623;NR6A1:-1.51537862402;RXRA_VDR{dimer}:-1.52931720618;PDX1:-1.5556402753;IKZF1:-1.61144942891;TEF:-1.72320186589;NFE2L1:-1.82204747634;ONECUT1,2:-1.89565067391;PPARG:-1.92756669031;ESRRA:-2.10837016065;HOX{A5,B5}:-2.25128302993
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10043-101F7;search_select_hide=table117:FF:10043-101F7
 }}

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FF:10043-101F7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:16, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0