FF:10155-103A2: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005583 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10027;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008687;DRR009559;DRZ000984;DRZ002369;DRZ012334;DRZ013719 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010038 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10155-103A2 | |id=FF:10155-103A2 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010038 | ||
|is_obsolete= | |||
|library_id=CNhs12315 | |||
|library_id_phase_based=2:CNhs12315 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10155 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10155 | |||
|name=medulla oblongata, adult, donor10252 | |name=medulla oblongata, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10027,,, | |profile_cagescan=NCig10027,,, | ||
|profile_hcage=CNhs12315,LSID913,release011,COMPLETED | |profile_hcage=CNhs12315,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=51.3536 | |rna_weight_ug=51.3536 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.13572864593516e-266!GO:0005737;cytoplasm;3.99723161096186e-157!GO:0043226;organelle;2.40897414082328e-104!GO:0043229;intracellular organelle;5.25604173531237e-104!GO:0043227;membrane-bound organelle;1.9838600293805e-96!GO:0043231;intracellular membrane-bound organelle;2.54727285652474e-96!GO:0044444;cytoplasmic part;2.66331938885391e-96!GO:0005515;protein binding;1.28124212415712e-74!GO:0044422;organelle part;3.97987493938181e-63!GO:0044446;intracellular organelle part;4.38524301549323e-62!GO:0032991;macromolecular complex;9.31840850277743e-53!GO:0016043;cellular component organization and biogenesis;3.12020378411907e-45!GO:0033036;macromolecule localization;4.16546561042225e-37!GO:0003723;RNA binding;5.20654956076665e-36!GO:0030529;ribonucleoprotein complex;9.58678408033714e-36!GO:0015031;protein transport;1.94950159781425e-35!GO:0005739;mitochondrion;1.50911367726658e-34!GO:0008104;protein localization;4.98999034871972e-34!GO:0045184;establishment of protein localization;2.72250463932301e-33!GO:0031090;organelle membrane;4.32606468926087e-33!GO:0043233;organelle lumen;5.80984001545297e-33!GO:0031974;membrane-enclosed lumen;5.80984001545297e-33!GO:0044428;nuclear part;3.16628669300337e-32!GO:0046907;intracellular transport;4.99706293419414e-30!GO:0044238;primary metabolic process;5.6852035256058e-30!GO:0043234;protein complex;4.27887725289241e-29!GO:0044237;cellular metabolic process;7.17401837590406e-29!GO:0016071;mRNA metabolic process;6.06454092810658e-27!GO:0051649;establishment of cellular localization;5.80395654879413e-26!GO:0051641;cellular localization;1.47365777479261e-25!GO:0043170;macromolecule metabolic process;1.56604646184641e-25!GO:0005634;nucleus;1.56604646184641e-25!GO:0016192;vesicle-mediated transport;3.288866988676e-25!GO:0031975;envelope;6.63590760143335e-25!GO:0044429;mitochondrial part;7.32759344095464e-25!GO:0031967;organelle envelope;7.8259677385725e-25!GO:0008380;RNA splicing;1.19874278379937e-23!GO:0005829;cytosol;2.65195575636353e-23!GO:0019538;protein metabolic process;2.76819801198329e-23!GO:0006396;RNA processing;2.92608713025145e-22!GO:0006886;intracellular protein transport;1.50588555244568e-21!GO:0006397;mRNA processing;1.50588555244568e-21!GO:0044260;cellular macromolecule metabolic process;6.64636174497982e-20!GO:0031981;nuclear lumen;1.24964140164316e-19!GO:0044267;cellular protein metabolic process;6.20398083081011e-19!GO:0006996;organelle organization and biogenesis;1.26825493963309e-18!GO:0006119;oxidative phosphorylation;3.54434363809789e-18!GO:0005740;mitochondrial envelope;4.37430309676312e-18!GO:0065003;macromolecular complex assembly;1.01393122367643e-17!GO:0031966;mitochondrial membrane;1.57632388284053e-17!GO:0005840;ribosome;1.64089347800043e-17!GO:0005794;Golgi apparatus;1.93784655249431e-17!GO:0019866;organelle inner membrane;3.0465951439525e-17!GO:0031982;vesicle;4.91486305068946e-17!GO:0048770;pigment granule;1.21217712348165e-16!GO:0042470;melanosome;1.21217712348165e-16!GO:0031410;cytoplasmic vesicle;2.36273285657173e-16!GO:0005743;mitochondrial inner membrane;2.9062154193118e-16!GO:0006412;translation;3.8976285978374e-16!GO:0000166;nucleotide binding;5.37588184226368e-16!GO:0005681;spliceosome;5.57508169828812e-16!GO:0022607;cellular component assembly;1.10257763560251e-15!GO:0009058;biosynthetic process;1.60174101827424e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.54900285599263e-15!GO:0031988;membrane-bound vesicle;5.55503133959945e-15!GO:0016462;pyrophosphatase activity;6.88169376414563e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;7.00628329775325e-15!GO:0016023;cytoplasmic membrane-bound vesicle;2.20339089894982e-14!GO:0017111;nucleoside-triphosphatase activity;3.98692666204044e-14!GO:0043283;biopolymer metabolic process;7.38270056014136e-14!GO:0003735;structural constituent of ribosome;1.80635150566964e-13!GO:0005654;nucleoplasm;2.70661967736007e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.70661967736007e-13!GO:0044455;mitochondrial membrane part;3.88080070231206e-13!GO:0009059;macromolecule biosynthetic process;5.89421668143193e-13!GO:0050136;NADH dehydrogenase (quinone) activity;7.20996045660425e-13!GO:0003954;NADH dehydrogenase activity;7.20996045660425e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.20996045660425e-13!GO:0012505;endomembrane system;7.73876685942113e-13!GO:0005746;mitochondrial respiratory chain;7.73876685942113e-13!GO:0010467;gene expression;9.35540751863005e-13!GO:0008134;transcription factor binding;2.78808183443028e-12!GO:0006457;protein folding;3.2158509183997e-12!GO:0044451;nucleoplasm part;3.70324951646921e-12!GO:0044249;cellular biosynthetic process;5.68483664595749e-12!GO:0008092;cytoskeletal protein binding;1.34540773482819e-11!GO:0033279;ribosomal subunit;1.37624607135422e-11!GO:0043228;non-membrane-bound organelle;2.77567604676226e-11!GO:0043232;intracellular non-membrane-bound organelle;2.77567604676226e-11!GO:0032553;ribonucleotide binding;3.41468348056562e-11!GO:0032555;purine ribonucleotide binding;3.41468348056562e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;3.45190253849558e-11!GO:0005783;endoplasmic reticulum;3.52358975524458e-11!GO:0016874;ligase activity;3.75445478751026e-11!GO:0006511;ubiquitin-dependent protein catabolic process;4.37531858899233e-11!GO:0030964;NADH dehydrogenase complex (quinone);5.76001248280612e-11!GO:0045271;respiratory chain complex I;5.76001248280612e-11!GO:0005747;mitochondrial respiratory chain complex I;5.76001248280612e-11!GO:0019941;modification-dependent protein catabolic process;5.9131943921197e-11!GO:0043632;modification-dependent macromolecule catabolic process;5.9131943921197e-11!GO:0044265;cellular macromolecule catabolic process;6.87383693124912e-11!GO:0044257;cellular protein catabolic process;7.18883876811677e-11!GO:0017076;purine nucleotide binding;9.81593320392974e-11!GO:0048193;Golgi vesicle transport;1.06215386526197e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.47866845931878e-10!GO:0042773;ATP synthesis coupled electron transport;1.47866845931878e-10!GO:0048523;negative regulation of cellular process;1.56742921252282e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.65218207110265e-10!GO:0051082;unfolded protein binding;1.6545622447909e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.74926346030585e-10!GO:0030695;GTPase regulator activity;1.88790393377237e-10!GO:0006512;ubiquitin cycle;2.83357901990487e-10!GO:0005768;endosome;3.58672891986723e-10!GO:0022618;protein-RNA complex assembly;3.94027764879612e-10!GO:0003924;GTPase activity;7.13415349786728e-10!GO:0007010;cytoskeleton organization and biogenesis;1.17632225865194e-09!GO:0006605;protein targeting;1.50244303288148e-09!GO:0007264;small GTPase mediated signal transduction;1.85697080754822e-09!GO:0006461;protein complex assembly;1.87000792714759e-09!GO:0044445;cytosolic part;2.04672250536776e-09!GO:0030036;actin cytoskeleton organization and biogenesis;2.25342249315879e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.43802722420546e-09!GO:0043412;biopolymer modification;2.47598513577706e-09!GO:0016044;membrane organization and biogenesis;2.4907976979846e-09!GO:0031980;mitochondrial lumen;2.89955495050386e-09!GO:0005759;mitochondrial matrix;2.89955495050386e-09!GO:0000502;proteasome complex (sensu Eukaryota);3.62693331421046e-09!GO:0008565;protein transporter activity;4.01724374623668e-09!GO:0006464;protein modification process;5.61159768442507e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.65089714605784e-09!GO:0043687;post-translational protein modification;5.71910770461238e-09!GO:0045045;secretory pathway;6.74589272052572e-09!GO:0016604;nuclear body;7.49608313443878e-09!GO:0008135;translation factor activity, nucleic acid binding;7.65222934264248e-09!GO:0043285;biopolymer catabolic process;7.70266546061026e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.95549719632075e-09!GO:0019899;enzyme binding;1.13134699850855e-08!GO:0048519;negative regulation of biological process;1.20166387634977e-08!GO:0044248;cellular catabolic process;1.54573405946072e-08!GO:0019829;cation-transporting ATPase activity;1.54573405946072e-08!GO:0005525;GTP binding;1.58034040642563e-08!GO:0005083;small GTPase regulator activity;1.67923878351061e-08!GO:0016607;nuclear speck;2.19972781723732e-08!GO:0031252;leading edge;2.51060498844934e-08!GO:0030029;actin filament-based process;3.50089480996961e-08!GO:0030163;protein catabolic process;4.54890536294293e-08!GO:0015630;microtubule cytoskeleton;9.05673758412186e-08!GO:0006793;phosphorus metabolic process;9.11851934699289e-08!GO:0006796;phosphate metabolic process;9.11851934699289e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.1805052545501e-07!GO:0009057;macromolecule catabolic process;1.39769327191594e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.5008275790729e-07!GO:0000375;RNA splicing, via transesterification reactions;1.5008275790729e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.5008275790729e-07!GO:0005635;nuclear envelope;1.57085103026095e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.75964211042592e-07!GO:0006446;regulation of translational initiation;2.3300366740446e-07!GO:0012501;programmed cell death;3.74568080308373e-07!GO:0006897;endocytosis;3.86888844892409e-07!GO:0010324;membrane invagination;3.86888844892409e-07!GO:0032561;guanyl ribonucleotide binding;3.86888844892409e-07!GO:0019001;guanyl nucleotide binding;3.86888844892409e-07!GO:0006810;transport;3.86888844892409e-07!GO:0008219;cell death;4.27804936075114e-07!GO:0016265;death;4.27804936075114e-07!GO:0031965;nuclear membrane;4.31396278160067e-07!GO:0006915;apoptosis;4.4116321209864e-07!GO:0006913;nucleocytoplasmic transport;5.16503509988229e-07!GO:0015986;ATP synthesis coupled proton transport;5.94348535792858e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.94348535792858e-07!GO:0015935;small ribosomal subunit;6.89357860505006e-07!GO:0003779;actin binding;6.94882506186851e-07!GO:0032940;secretion by cell;8.55678458348279e-07!GO:0051179;localization;9.37141474772273e-07!GO:0051169;nuclear transport;9.37813181974722e-07!GO:0003712;transcription cofactor activity;1.01386426160498e-06!GO:0051186;cofactor metabolic process;1.02907072675927e-06!GO:0016564;transcription repressor activity;1.16165760717585e-06!GO:0044431;Golgi apparatus part;1.22247758421988e-06!GO:0044432;endoplasmic reticulum part;1.73141688348501e-06!GO:0003743;translation initiation factor activity;2.0512574030056e-06!GO:0048475;coated membrane;2.08759520083334e-06!GO:0030117;membrane coat;2.08759520083334e-06!GO:0006413;translational initiation;2.27624111310598e-06!GO:0005730;nucleolus;2.6300945314586e-06!GO:0008047;enzyme activator activity;2.9761756217773e-06!GO:0044440;endosomal part;3.08958425987432e-06!GO:0010008;endosome membrane;3.08958425987432e-06!GO:0032559;adenyl ribonucleotide binding;3.17961641104876e-06!GO:0005769;early endosome;3.72748413373752e-06!GO:0015631;tubulin binding;3.95562628167686e-06!GO:0005524;ATP binding;4.44810744661988e-06!GO:0045333;cellular respiration;4.48127976904673e-06!GO:0009060;aerobic respiration;4.62700074318663e-06!GO:0005773;vacuole;4.86225572955513e-06!GO:0016887;ATPase activity;4.9688785499182e-06!GO:0006366;transcription from RNA polymerase II promoter;5.43567590485471e-06!GO:0008639;small protein conjugating enzyme activity;5.52377523927408e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.68679843577952e-06!GO:0005793;ER-Golgi intermediate compartment;5.90921696653122e-06!GO:0048471;perinuclear region of cytoplasm;6.21090463317689e-06!GO:0005096;GTPase activator activity;6.38786975473492e-06!GO:0045786;negative regulation of progression through cell cycle;6.51074065824941e-06!GO:0046034;ATP metabolic process;6.77908616208024e-06!GO:0016070;RNA metabolic process;6.83728048557004e-06!GO:0004842;ubiquitin-protein ligase activity;7.18109447313081e-06!GO:0005874;microtubule;7.45223207064704e-06!GO:0005770;late endosome;7.93638439565451e-06!GO:0030554;adenyl nucleotide binding;7.94316306490175e-06!GO:0019787;small conjugating protein ligase activity;8.70231677778363e-06!GO:0016310;phosphorylation;8.92245295751427e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.04380575300048e-05!GO:0009150;purine ribonucleotide metabolic process;1.16673238238348e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.26873632216076e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.26873632216076e-05!GO:0050794;regulation of cellular process;1.37992527634088e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.56451485086055e-05!GO:0017038;protein import;1.64161595009722e-05!GO:0050789;regulation of biological process;1.64161595009722e-05!GO:0015934;large ribosomal subunit;1.67211271047515e-05!GO:0006754;ATP biosynthetic process;1.67211271047515e-05!GO:0006753;nucleoside phosphate metabolic process;1.67211271047515e-05!GO:0006163;purine nucleotide metabolic process;1.68647478506037e-05!GO:0051234;establishment of localization;1.68647478506037e-05!GO:0009055;electron carrier activity;2.02934743627681e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.33346076148289e-05!GO:0042623;ATPase activity, coupled;2.40515123792867e-05!GO:0009141;nucleoside triphosphate metabolic process;2.42308698236748e-05!GO:0006099;tricarboxylic acid cycle;2.59801358030199e-05!GO:0046356;acetyl-CoA catabolic process;2.59801358030199e-05!GO:0007265;Ras protein signal transduction;2.91832919962105e-05!GO:0030027;lamellipodium;2.92432183651306e-05!GO:0005905;coated pit;3.03386974790204e-05!GO:0030135;coated vesicle;3.09528262427794e-05!GO:0051246;regulation of protein metabolic process;3.12930011299146e-05!GO:0000323;lytic vacuole;3.2872016947526e-05!GO:0005764;lysosome;3.2872016947526e-05!GO:0007242;intracellular signaling cascade;3.40299360086089e-05!GO:0009259;ribonucleotide metabolic process;3.40811264457789e-05!GO:0000902;cell morphogenesis;3.43101253502787e-05!GO:0032989;cellular structure morphogenesis;3.43101253502787e-05!GO:0006164;purine nucleotide biosynthetic process;3.51578807515865e-05!GO:0008287;protein serine/threonine phosphatase complex;3.56336000994876e-05!GO:0051128;regulation of cellular component organization and biogenesis;3.85341091400947e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.85341091400947e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.85341091400947e-05!GO:0016881;acid-amino acid ligase activity;3.98116525835824e-05!GO:0009142;nucleoside triphosphate biosynthetic process;4.77933073836845e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.77933073836845e-05!GO:0005761;mitochondrial ribosome;5.11173653781436e-05!GO:0000313;organellar ribosome;5.11173653781436e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.30530702750573e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.67243186505226e-05!GO:0006732;coenzyme metabolic process;5.68805012924406e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.7760875633458e-05!GO:0045259;proton-transporting ATP synthase complex;5.94773416066541e-05!GO:0009109;coenzyme catabolic process;5.94773416066541e-05!GO:0003714;transcription corepressor activity;6.18358239167534e-05!GO:0043069;negative regulation of programmed cell death;6.6390178797031e-05!GO:0005789;endoplasmic reticulum membrane;7.82824859252724e-05!GO:0043066;negative regulation of apoptosis;8.42345911989097e-05!GO:0044453;nuclear membrane part;8.72946004167112e-05!GO:0009056;catabolic process;8.90841503940478e-05!GO:0015078;hydrogen ion transmembrane transporter activity;9.71902563452687e-05!GO:0051187;cofactor catabolic process;0.000102341810362037!GO:0006916;anti-apoptosis;0.000106397884438247!GO:0000139;Golgi membrane;0.000106635339176022!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00010711394362627!GO:0006084;acetyl-CoA metabolic process;0.000113117888965573!GO:0000245;spliceosome assembly;0.00011392494573812!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000123957509726413!GO:0015399;primary active transmembrane transporter activity;0.000123957509726413!GO:0048468;cell development;0.000128091506629295!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000130055041630804!GO:0009260;ribonucleotide biosynthetic process;0.000133478709076541!GO:0009966;regulation of signal transduction;0.000143881329776466!GO:0030120;vesicle coat;0.000144187996512968!GO:0030662;coated vesicle membrane;0.000144187996512968!GO:0008017;microtubule binding;0.000152484469048094!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000160128210850125!GO:0016568;chromatin modification;0.000174299165074346!GO:0031072;heat shock protein binding;0.000194400975645278!GO:0009892;negative regulation of metabolic process;0.000202804416246538!GO:0043492;ATPase activity, coupled to movement of substances;0.000206619115227936!GO:0006613;cotranslational protein targeting to membrane;0.000212453317629414!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000231643488273142!GO:0001726;ruffle;0.000267359498058161!GO:0006606;protein import into nucleus;0.000274641759237619!GO:0006888;ER to Golgi vesicle-mediated transport;0.000277861518323978!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000287045208434603!GO:0051170;nuclear import;0.000313318020426209!GO:0005798;Golgi-associated vesicle;0.000316724419359058!GO:0005875;microtubule associated complex;0.00037304246978159!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000393356013028115!GO:0031901;early endosome membrane;0.000434314177766322!GO:0030867;rough endoplasmic reticulum membrane;0.000436375090495627!GO:0006403;RNA localization;0.000436777258459292!GO:0015980;energy derivation by oxidation of organic compounds;0.000462417420859584!GO:0016197;endosome transport;0.000466351162221112!GO:0042802;identical protein binding;0.000502639215173133!GO:0008286;insulin receptor signaling pathway;0.000510774272944282!GO:0050657;nucleic acid transport;0.000510774272944282!GO:0051236;establishment of RNA localization;0.000510774272944282!GO:0050658;RNA transport;0.000510774272944282!GO:0043623;cellular protein complex assembly;0.000521718000423691!GO:0005643;nuclear pore;0.000536052118953047!GO:0016481;negative regulation of transcription;0.000536056685097535!GO:0008361;regulation of cell size;0.000545469835353873!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000556453882461076!GO:0022890;inorganic cation transmembrane transporter activity;0.000562354223733996!GO:0019717;synaptosome;0.000584891641814928!GO:0006323;DNA packaging;0.000614545998717241!GO:0005791;rough endoplasmic reticulum;0.000632894982834818!GO:0030133;transport vesicle;0.000655281628032893!GO:0008654;phospholipid biosynthetic process;0.000665938748440223!GO:0000151;ubiquitin ligase complex;0.000717489997692293!GO:0006752;group transfer coenzyme metabolic process;0.000766291069361278!GO:0008154;actin polymerization and/or depolymerization;0.000766783654536055!GO:0000159;protein phosphatase type 2A complex;0.000853310045613273!GO:0003729;mRNA binding;0.000880215750311966!GO:0031324;negative regulation of cellular metabolic process;0.000880215750311966!GO:0030118;clathrin coat;0.000905870754168813!GO:0032446;protein modification by small protein conjugation;0.000929054982784921!GO:0051789;response to protein stimulus;0.000939937408518773!GO:0006986;response to unfolded protein;0.000939937408518773!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00094017520457893!GO:0004812;aminoacyl-tRNA ligase activity;0.00094017520457893!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00094017520457893!GO:0051056;regulation of small GTPase mediated signal transduction;0.00103698561066708!GO:0016049;cell growth;0.0010645717236424!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00106516488786245!GO:0043566;structure-specific DNA binding;0.00111969799962648!GO:0006607;NLS-bearing substrate import into nucleus;0.00121256158694964!GO:0007243;protein kinase cascade;0.00121256158694964!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0012510960853903!GO:0006259;DNA metabolic process;0.00140439121327873!GO:0005085;guanyl-nucleotide exchange factor activity;0.00140484919560362!GO:0001666;response to hypoxia;0.00157264193565058!GO:0016567;protein ubiquitination;0.00157914912897317!GO:0019904;protein domain specific binding;0.00160896354329645!GO:0065007;biological regulation;0.00161054831152145!GO:0016791;phosphoric monoester hydrolase activity;0.00162517707400703!GO:0045892;negative regulation of transcription, DNA-dependent;0.00167018171220508!GO:0030532;small nuclear ribonucleoprotein complex;0.00168835028965664!GO:0003676;nucleic acid binding;0.00169694015673688!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00173160124039074!GO:0008601;protein phosphatase type 2A regulator activity;0.00174804305414234!GO:0005938;cell cortex;0.00176386702964903!GO:0043038;amino acid activation;0.00178240541441598!GO:0006418;tRNA aminoacylation for protein translation;0.00178240541441598!GO:0043039;tRNA aminoacylation;0.00178240541441598!GO:0051726;regulation of cell cycle;0.00188553543479728!GO:0005839;proteasome core complex (sensu Eukaryota);0.00192347042658369!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00194532022506564!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00204909190850765!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00205946511872171!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00206261388705454!GO:0003724;RNA helicase activity;0.00207416224415359!GO:0007272;ensheathment of neurons;0.00211271478955597!GO:0008366;axon ensheathment;0.00211271478955597!GO:0007019;microtubule depolymerization;0.00214074573752097!GO:0005100;Rho GTPase activator activity;0.00216403367968269!GO:0000074;regulation of progression through cell cycle;0.00219120621643703!GO:0043209;myelin sheath;0.00219520015170285!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00225040434368571!GO:0006402;mRNA catabolic process;0.00233132172344022!GO:0004721;phosphoprotein phosphatase activity;0.00253406620425133!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0026074403438169!GO:0033673;negative regulation of kinase activity;0.00295485305152755!GO:0006469;negative regulation of protein kinase activity;0.00295485305152755!GO:0007049;cell cycle;0.00300560659555684!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00311980143682918!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00311980143682918!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00311980143682918!GO:0006650;glycerophospholipid metabolic process;0.00327042613367181!GO:0006612;protein targeting to membrane;0.00331369902183351!GO:0003713;transcription coactivator activity;0.00342472354043815!GO:0005741;mitochondrial outer membrane;0.00345535366265541!GO:0051188;cofactor biosynthetic process;0.00360129654426577!GO:0031902;late endosome membrane;0.00360814304976457!GO:0007266;Rho protein signal transduction;0.00371361108118887!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00382669717954827!GO:0051087;chaperone binding;0.0039322470966687!GO:0031968;organelle outer membrane;0.00403456896217588!GO:0005813;centrosome;0.00405803415192517!GO:0019867;outer membrane;0.00412990067517976!GO:0046467;membrane lipid biosynthetic process;0.00418874238033696!GO:0016126;sterol biosynthetic process;0.00421427097603621!GO:0042981;regulation of apoptosis;0.00423784740711183!GO:0043067;regulation of programmed cell death;0.00436211365078926!GO:0051920;peroxiredoxin activity;0.00457793879498953!GO:0051028;mRNA transport;0.00458999725967958!GO:0001508;regulation of action potential;0.00464087946783055!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.00468918463980626!GO:0030041;actin filament polymerization;0.0049993623015877!GO:0050811;GABA receptor binding;0.00510648146051739!GO:0051348;negative regulation of transferase activity;0.00512152114230455!GO:0005099;Ras GTPase activator activity;0.00519190804523847!GO:0006643;membrane lipid metabolic process;0.00525363891343084!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00538395592961902!GO:0019208;phosphatase regulator activity;0.00539090841926906!GO:0043021;ribonucleoprotein binding;0.00552302940243936!GO:0051261;protein depolymerization;0.00565163515851033!GO:0003697;single-stranded DNA binding;0.00607325840234136!GO:0008139;nuclear localization sequence binding;0.00611642673782725!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00632501696086021!GO:0031114;regulation of microtubule depolymerization;0.00652258129148754!GO:0007026;negative regulation of microtubule depolymerization;0.00652258129148754!GO:0022406;membrane docking;0.00663923416537923!GO:0048278;vesicle docking;0.00663923416537923!GO:0005885;Arp2/3 protein complex;0.00667332023487942!GO:0016311;dephosphorylation;0.0070273185573328!GO:0048487;beta-tubulin binding;0.00709210414438333!GO:0008610;lipid biosynthetic process;0.00709210414438333!GO:0019902;phosphatase binding;0.00712978428639717!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00745766626879873!GO:0004667;prostaglandin-D synthase activity;0.00745766626879873!GO:0050802;circadian sleep/wake cycle, sleep;0.00745766626879873!GO:0022410;circadian sleep/wake cycle process;0.00745766626879873!GO:0042749;regulation of circadian sleep/wake cycle;0.00745766626879873!GO:0030426;growth cone;0.00768297902539889!GO:0008026;ATP-dependent helicase activity;0.00805344094105024!GO:0050767;regulation of neurogenesis;0.00826980288809807!GO:0016050;vesicle organization and biogenesis;0.00833317393595964!GO:0005815;microtubule organizing center;0.00841758765663252!GO:0006904;vesicle docking during exocytosis;0.00851776653407905!GO:0015629;actin cytoskeleton;0.00874615729870936!GO:0004722;protein serine/threonine phosphatase activity;0.00876583593301071!GO:0046578;regulation of Ras protein signal transduction;0.00878837568401209!GO:0030427;site of polarized growth;0.00884517705020785!GO:0004298;threonine endopeptidase activity;0.00896292744083794!GO:0005774;vacuolar membrane;0.00896292744083794!GO:0030136;clathrin-coated vesicle;0.00902689870474829!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00906586481455159!GO:0004386;helicase activity;0.00928715220497166!GO:0005667;transcription factor complex;0.00961700788439105!GO:0007017;microtubule-based process;0.00992405632486137!GO:0012506;vesicle membrane;0.00994716022879983!GO:0001558;regulation of cell growth;0.00995605818415918!GO:0043087;regulation of GTPase activity;0.0100089972647226!GO:0007050;cell cycle arrest;0.0104839080776141!GO:0007399;nervous system development;0.0110326377431695!GO:0048500;signal recognition particle;0.011147444437894!GO:0065009;regulation of a molecular function;0.0114764834134588!GO:0006891;intra-Golgi vesicle-mediated transport;0.0114764834134588!GO:0044448;cell cortex part;0.0116656021043455!GO:0006892;post-Golgi vesicle-mediated transport;0.0121618501638145!GO:0009108;coenzyme biosynthetic process;0.0122699425497791!GO:0030384;phosphoinositide metabolic process;0.0124187321525515!GO:0006401;RNA catabolic process;0.012476703561666!GO:0051168;nuclear export;0.0127634270027977!GO:0046488;phosphatidylinositol metabolic process;0.0127982751453606!GO:0043488;regulation of mRNA stability;0.0128525434842587!GO:0043487;regulation of RNA stability;0.0128525434842587!GO:0016408;C-acyltransferase activity;0.012943646669202!GO:0016363;nuclear matrix;0.0130443544481495!GO:0051427;hormone receptor binding;0.0131313057483727!GO:0035035;histone acetyltransferase binding;0.013594028273523!GO:0006470;protein amino acid dephosphorylation;0.0144938836879432!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0151563207888955!GO:0048154;S100 beta binding;0.0154464500451289!GO:0005868;cytoplasmic dynein complex;0.0155154603896534!GO:0046930;pore complex;0.0158324605201796!GO:0008186;RNA-dependent ATPase activity;0.0158324605201796!GO:0043005;neuron projection;0.0159755698834016!GO:0005869;dynactin complex;0.0167465599551569!GO:0019888;protein phosphatase regulator activity;0.0168003821909382!GO:0051287;NAD binding;0.0171293201188627!GO:0005765;lysosomal membrane;0.0175785994240373!GO:0065002;intracellular protein transport across a membrane;0.0176183970168588!GO:0005665;DNA-directed RNA polymerase II, core complex;0.01774570070927!GO:0044433;cytoplasmic vesicle part;0.017948531355471!GO:0042026;protein refolding;0.0180135541860322!GO:0030742;GTP-dependent protein binding;0.0181405917579513!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0193672483864133!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0195268392812195!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0201512995335599!GO:0030132;clathrin coat of coated pit;0.0207018488658724!GO:0043086;negative regulation of catalytic activity;0.0207262135050565!GO:0008250;oligosaccharyl transferase complex;0.021043660969538!GO:0005788;endoplasmic reticulum lumen;0.021395906879769!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0216145946880172!GO:0033043;regulation of organelle organization and biogenesis;0.0216145946880172!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0216747300693589!GO:0000059;protein import into nucleus, docking;0.0217665630238785!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0218774301688957!GO:0035257;nuclear hormone receptor binding;0.0218774301688957!GO:0051252;regulation of RNA metabolic process;0.0220016957636178!GO:0005856;cytoskeleton;0.02247714686684!GO:0051020;GTPase binding;0.0224778311499591!GO:0007034;vacuolar transport;0.0224778311499591!GO:0016301;kinase activity;0.0234222941849328!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0234360073994633!GO:0005048;signal sequence binding;0.0238965238436829!GO:0033116;ER-Golgi intermediate compartment membrane;0.0249397826651335!GO:0004674;protein serine/threonine kinase activity;0.0249430709373788!GO:0017166;vinculin binding;0.0253165729714432!GO:0030658;transport vesicle membrane;0.0255231914157562!GO:0051276;chromosome organization and biogenesis;0.025532717987631!GO:0042552;myelination;0.0259762984455882!GO:0030137;COPI-coated vesicle;0.0260443792520435!GO:0006644;phospholipid metabolic process;0.0261405028384914!GO:0003746;translation elongation factor activity;0.0265098776211342!GO:0004860;protein kinase inhibitor activity;0.0266263228148065!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0267217953463014!GO:0003690;double-stranded DNA binding;0.0267856416111565!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0270940326859837!GO:0030119;AP-type membrane coat adaptor complex;0.0271263518599922!GO:0001887;selenium metabolic process;0.0285564564519677!GO:0006695;cholesterol biosynthetic process;0.0285923305099438!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0290951682180084!GO:0045047;protein targeting to ER;0.0290951682180084!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0291165181540798!GO:0008022;protein C-terminus binding;0.0300593653261173!GO:0044437;vacuolar part;0.0304054501357233!GO:0016859;cis-trans isomerase activity;0.0308297735592047!GO:0006414;translational elongation;0.0316284355919219!GO:0031124;mRNA 3'-end processing;0.0317037168184261!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0317037168184261!GO:0030320;cellular monovalent inorganic anion homeostasis;0.032234781175005!GO:0055083;monovalent inorganic anion homeostasis;0.032234781175005!GO:0055064;chloride ion homeostasis;0.032234781175005!GO:0030644;cellular chloride ion homeostasis;0.032234781175005!GO:0030659;cytoplasmic vesicle membrane;0.0322539938802991!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0336147145148097!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0336147145148097!GO:0016563;transcription activator activity;0.0336147145148097!GO:0006376;mRNA splice site selection;0.0339876086641969!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0339876086641969!GO:0030131;clathrin adaptor complex;0.0357526191288181!GO:0004004;ATP-dependent RNA helicase activity;0.0372044734508951!GO:0000062;acyl-CoA binding;0.0378843869992665!GO:0000118;histone deacetylase complex;0.0385681031420884!GO:0030660;Golgi-associated vesicle membrane;0.0388978939469022!GO:0019783;small conjugating protein-specific protease activity;0.0389353003726839!GO:0030031;cell projection biogenesis;0.0390938516919564!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0391688135380044!GO:0042254;ribosome biogenesis and assembly;0.0391688135380044!GO:0009117;nucleotide metabolic process;0.0393413163946804!GO:0007005;mitochondrion organization and biogenesis;0.0393696303975426!GO:0043681;protein import into mitochondrion;0.0394635920639919!GO:0004576;oligosaccharyl transferase activity;0.0395582283359407!GO:0005545;phosphatidylinositol binding;0.0397168643787025!GO:0051540;metal cluster binding;0.0398264422412533!GO:0051536;iron-sulfur cluster binding;0.0398264422412533!GO:0005092;GDP-dissociation inhibitor activity;0.0399951896304001!GO:0019911;structural constituent of myelin sheath;0.0400356231844313!GO:0015682;ferric iron transport;0.040184082414995!GO:0015091;ferric iron transmembrane transporter activity;0.040184082414995!GO:0031643;positive regulation of myelination;0.040184082414995!GO:0019752;carboxylic acid metabolic process;0.0402151419634675!GO:0003702;RNA polymerase II transcription factor activity;0.0405562094734448!GO:0045893;positive regulation of transcription, DNA-dependent;0.0406638205333622!GO:0006383;transcription from RNA polymerase III promoter;0.0406943432273337!GO:0046474;glycerophospholipid biosynthetic process;0.0421578685649531!GO:0006091;generation of precursor metabolites and energy;0.0436486674609582!GO:0030569;chymotrypsin inhibitor activity;0.0437355182868987!GO:0030663;COPI coated vesicle membrane;0.0437355182868987!GO:0030126;COPI vesicle coat;0.0437355182868987!GO:0030258;lipid modification;0.0437355182868987!GO:0004843;ubiquitin-specific protease activity;0.0439546345405126!GO:0032535;regulation of cellular component size;0.0450367697723263!GO:0046983;protein dimerization activity;0.0451172183317761!GO:0030139;endocytic vesicle;0.0461961251913245!GO:0016579;protein deubiquitination;0.0463081826065364!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0466724405705625!GO:0008312;7S RNA binding;0.0470703433449288!GO:0030911;TPR domain binding;0.0475664024235683!GO:0019894;kinesin binding;0.0476025830350925!GO:0035258;steroid hormone receptor binding;0.0476025830350925!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0485687494446708!GO:0044255;cellular lipid metabolic process;0.0489604583966031!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0491069197513145!GO:0042578;phosphoric ester hydrolase activity;0.0496649085700574!GO:0030641;cellular hydrogen ion homeostasis;0.0499042089718045!GO:0051539;4 iron, 4 sulfur cluster binding;0.0499183300679519 | |||
|sample_id=10155 | |sample_id=10155 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=medulla oblongata | |sample_tissue=medulla oblongata | ||
|top_motifs=RFX2..5_RFXANK_RFXAP:3.35402022597;SOX5:3.13888673658;SOX2:3.13212463086;RFX1:2.98752516276;NKX3-2:2.93277337547;NFIX:2.88309955897;GATA4:2.81923920462;SOX{8,9,10}:2.64591443658;MYFfamily:2.58886456632;REST:2.54068302456;ZFP161:2.4547490586;PRDM1:2.41299572181;MTF1:2.38653085873;GTF2I:2.27765027001;PATZ1:2.24345534541;RREB1:2.21233386405;NHLH1,2:2.19530005357;EP300:2.19186639516;MED-1{core}:2.17221346442;BPTF:2.11263123415;CUX2:2.11119136634;NR3C1:2.08952561401;FOXO1,3,4:2.04821422956;DBP:1.98520810236;OCT4_SOX2{dimer}:1.95525512771;ATF2:1.92453186429;MTE{core}:1.91220363692;HIC1:1.8786165105;MZF1:1.85678521983;TFAP2B:1.85380102087;PRRX1,2:1.84943131323;MYBL2:1.83280861871;PAX6:1.81830336384;TGIF1:1.79842304767;KLF4:1.79021096483;SP1:1.78133810983;LMO2:1.78104235995;FOXD3:1.76609399269;POU6F1:1.74822726227;MAZ:1.73993039868;EBF1:1.73478858309;AR:1.72227200893;FOX{D1,D2}:1.69409036707;ZBTB6:1.68417338001;POU5F1:1.57505967332;SOX17:1.55620496409;HOX{A6,A7,B6,B7}:1.51508661651;SMAD1..7,9:1.50248919595;GCM1,2:1.49887464484;HSF1,2:1.47614470466;HBP1_HMGB_SSRP1_UBTF:1.45197533471;GFI1B:1.44900170064;EGR1..3:1.44594571578;ZNF423:1.44160428153;FOXP1:1.44155082554;RBPJ:1.40435419287;NANOG:1.32404666189;SREBF1,2:1.31530909159;FOXP3:1.27975813052;ZIC1..3:1.25644638218;STAT1,3:1.25440474623;XBP1:1.24433593492;TLX1..3_NFIC{dimer}:1.23608905276;FOXQ1:1.23574965802;TFAP2{A,C}:1.21720241122;PAX5:1.21490299821;CRX:1.20722992434;NRF1:1.16007553188;FOXM1:1.13814773191;BREu{core}:1.06143692819;STAT2,4,6:1.05474969005;ZNF384:1.04482526065;JUN:1.04303446169;T:1.03991791917;POU3F1..4:1.02265161237;VSX1,2:0.99267068055;GTF2A1,2:0.940916588042;IKZF2:0.920605209467;TOPORS:0.915580670136;FOX{F1,F2,J1}:0.910669292939;PAX4:0.897849676367;TLX2:0.800649640514;LEF1_TCF7_TCF7L1,2:0.796302431587;HOX{A4,D4}:0.794503201979;CDC5L:0.767666044623;MYOD1:0.750176074616;AHR_ARNT_ARNT2:0.743132535908;ZNF143:0.72817083699;MAFB:0.697402963726;FOX{I1,J2}:0.693999243684;IRF7:0.68636474047;ONECUT1,2:0.676424231095;ARID5B:0.655485612511;PDX1:0.610865307001;FOXA2:0.59443088257;NFIL3:0.56414788795;SPZ1:0.563637831886;GFI1:0.548731336322;HMX1:0.537795345359;NFY{A,B,C}:0.530025732621;ZBTB16:0.522389845184;RORA:0.519631782416;HOXA9_MEIS1:0.503325904017;XCPE1{core}:0.478668041201;HMGA1,2:0.477442373387;NFATC1..3:0.466418078041;FOXN1:0.454909392718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.436702454999;HAND1,2:0.41800978792;TFCP2:0.407012120389;CREB1:0.401208649922;NKX2-3_NKX2-5:0.397940398845;TFDP1:0.384180146972;ADNP_IRX_SIX_ZHX:0.305666786568;NKX6-1,2:0.271491784627;IRF1,2:0.268385951912;PAX2:0.262413061103;ZEB1:0.230471617704;GZF1:0.166531722714;MEF2{A,B,C,D}:0.158493298725;PITX1..3:0.139719266783;ESRRA:0.0337341105176;IKZF1:0.0310698133129;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0229225658633;ATF5_CREB3:-0.0700498726834;LHX3,4:-0.0885970791624;ZNF238:-0.130710912295;ATF6:-0.138780268954;ALX1:-0.204358590275;ATF4:-0.231768436559;TFAP4:-0.245346455289;UFEwm:-0.287947911677;NR5A1,2:-0.292356858384;NFE2L2:-0.297280351723;PBX1:-0.302644486708;AIRE:-0.315336814483;SPI1:-0.320643664473;EVI1:-0.32706315803;SNAI1..3:-0.342636632586;TBP:-0.362198605016;NR6A1:-0.365946567502;ETS1,2:-0.37297203246;TEAD1:-0.404710787137;SPIB:-0.405401938354;HNF4A_NR2F1,2:-0.433012113464;NKX3-1:-0.435160446902;POU1F1:-0.444004854696;NR1H4:-0.459066647859;YY1:-0.467168369891;TP53:-0.48649427147;DMAP1_NCOR{1,2}_SMARC:-0.487969878719;ALX4:-0.541194848749;bHLH_family:-0.549179700996;TEF:-0.554068179455;CEBPA,B_DDIT3:-0.578238077955;NANOG{mouse}:-0.594666481535;GATA6:-0.618631607086;CDX1,2,4:-0.622680661561;NFE2:-0.627526839546;HNF1A:-0.691438309509;PAX8:-0.732883014008;RXR{A,B,G}:-0.842163261764;NFE2L1:-0.863446249334;FOXL1:-0.867813192388;NKX2-1,4:-0.893436374764;ELF1,2,4:-0.900293114999;PAX3,7:-0.921335681641;TBX4,5:-0.929472827882;TAL1_TCF{3,4,12}:-0.935527316007;HLF:-0.940424173307;SRF:-0.995372261166;NKX2-2,8:-1.00973512154;HIF1A:-1.01589202832;NFKB1_REL_RELA:-1.04993058292;E2F1..5:-1.07147417239;FOSL2:-1.09201967005;ELK1,4_GABP{A,B1}:-1.125987631;BACH2:-1.13460835531;ZNF148:-1.14237610639;RUNX1..3:-1.21527623942;FOS_FOS{B,L1}_JUN{B,D}:-1.23758033697;ESR1:-1.28709816006;GLI1..3:-1.35137271911;MYB:-1.37962858146;PAX1,9:-1.40533423911;POU2F1..3:-1.42244338203;RXRA_VDR{dimer}:-1.57482349057;HES1:-1.89183663049;PPARG:-2.0034618884;EN1,2:-2.08093201318;STAT5{A,B}:-2.13163487397;HOX{A5,B5}:-2.62189017899 | |top_motifs=RFX2..5_RFXANK_RFXAP:3.35402022597;SOX5:3.13888673658;SOX2:3.13212463086;RFX1:2.98752516276;NKX3-2:2.93277337547;NFIX:2.88309955897;GATA4:2.81923920462;SOX{8,9,10}:2.64591443658;MYFfamily:2.58886456632;REST:2.54068302456;ZFP161:2.4547490586;PRDM1:2.41299572181;MTF1:2.38653085873;GTF2I:2.27765027001;PATZ1:2.24345534541;RREB1:2.21233386405;NHLH1,2:2.19530005357;EP300:2.19186639516;MED-1{core}:2.17221346442;BPTF:2.11263123415;CUX2:2.11119136634;NR3C1:2.08952561401;FOXO1,3,4:2.04821422956;DBP:1.98520810236;OCT4_SOX2{dimer}:1.95525512771;ATF2:1.92453186429;MTE{core}:1.91220363692;HIC1:1.8786165105;MZF1:1.85678521983;TFAP2B:1.85380102087;PRRX1,2:1.84943131323;MYBL2:1.83280861871;PAX6:1.81830336384;TGIF1:1.79842304767;KLF4:1.79021096483;SP1:1.78133810983;LMO2:1.78104235995;FOXD3:1.76609399269;POU6F1:1.74822726227;MAZ:1.73993039868;EBF1:1.73478858309;AR:1.72227200893;FOX{D1,D2}:1.69409036707;ZBTB6:1.68417338001;POU5F1:1.57505967332;SOX17:1.55620496409;HOX{A6,A7,B6,B7}:1.51508661651;SMAD1..7,9:1.50248919595;GCM1,2:1.49887464484;HSF1,2:1.47614470466;HBP1_HMGB_SSRP1_UBTF:1.45197533471;GFI1B:1.44900170064;EGR1..3:1.44594571578;ZNF423:1.44160428153;FOXP1:1.44155082554;RBPJ:1.40435419287;NANOG:1.32404666189;SREBF1,2:1.31530909159;FOXP3:1.27975813052;ZIC1..3:1.25644638218;STAT1,3:1.25440474623;XBP1:1.24433593492;TLX1..3_NFIC{dimer}:1.23608905276;FOXQ1:1.23574965802;TFAP2{A,C}:1.21720241122;PAX5:1.21490299821;CRX:1.20722992434;NRF1:1.16007553188;FOXM1:1.13814773191;BREu{core}:1.06143692819;STAT2,4,6:1.05474969005;ZNF384:1.04482526065;JUN:1.04303446169;T:1.03991791917;POU3F1..4:1.02265161237;VSX1,2:0.99267068055;GTF2A1,2:0.940916588042;IKZF2:0.920605209467;TOPORS:0.915580670136;FOX{F1,F2,J1}:0.910669292939;PAX4:0.897849676367;TLX2:0.800649640514;LEF1_TCF7_TCF7L1,2:0.796302431587;HOX{A4,D4}:0.794503201979;CDC5L:0.767666044623;MYOD1:0.750176074616;AHR_ARNT_ARNT2:0.743132535908;ZNF143:0.72817083699;MAFB:0.697402963726;FOX{I1,J2}:0.693999243684;IRF7:0.68636474047;ONECUT1,2:0.676424231095;ARID5B:0.655485612511;PDX1:0.610865307001;FOXA2:0.59443088257;NFIL3:0.56414788795;SPZ1:0.563637831886;GFI1:0.548731336322;HMX1:0.537795345359;NFY{A,B,C}:0.530025732621;ZBTB16:0.522389845184;RORA:0.519631782416;HOXA9_MEIS1:0.503325904017;XCPE1{core}:0.478668041201;HMGA1,2:0.477442373387;NFATC1..3:0.466418078041;FOXN1:0.454909392718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.436702454999;HAND1,2:0.41800978792;TFCP2:0.407012120389;CREB1:0.401208649922;NKX2-3_NKX2-5:0.397940398845;TFDP1:0.384180146972;ADNP_IRX_SIX_ZHX:0.305666786568;NKX6-1,2:0.271491784627;IRF1,2:0.268385951912;PAX2:0.262413061103;ZEB1:0.230471617704;GZF1:0.166531722714;MEF2{A,B,C,D}:0.158493298725;PITX1..3:0.139719266783;ESRRA:0.0337341105176;IKZF1:0.0310698133129;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0229225658633;ATF5_CREB3:-0.0700498726834;LHX3,4:-0.0885970791624;ZNF238:-0.130710912295;ATF6:-0.138780268954;ALX1:-0.204358590275;ATF4:-0.231768436559;TFAP4:-0.245346455289;UFEwm:-0.287947911677;NR5A1,2:-0.292356858384;NFE2L2:-0.297280351723;PBX1:-0.302644486708;AIRE:-0.315336814483;SPI1:-0.320643664473;EVI1:-0.32706315803;SNAI1..3:-0.342636632586;TBP:-0.362198605016;NR6A1:-0.365946567502;ETS1,2:-0.37297203246;TEAD1:-0.404710787137;SPIB:-0.405401938354;HNF4A_NR2F1,2:-0.433012113464;NKX3-1:-0.435160446902;POU1F1:-0.444004854696;NR1H4:-0.459066647859;YY1:-0.467168369891;TP53:-0.48649427147;DMAP1_NCOR{1,2}_SMARC:-0.487969878719;ALX4:-0.541194848749;bHLH_family:-0.549179700996;TEF:-0.554068179455;CEBPA,B_DDIT3:-0.578238077955;NANOG{mouse}:-0.594666481535;GATA6:-0.618631607086;CDX1,2,4:-0.622680661561;NFE2:-0.627526839546;HNF1A:-0.691438309509;PAX8:-0.732883014008;RXR{A,B,G}:-0.842163261764;NFE2L1:-0.863446249334;FOXL1:-0.867813192388;NKX2-1,4:-0.893436374764;ELF1,2,4:-0.900293114999;PAX3,7:-0.921335681641;TBX4,5:-0.929472827882;TAL1_TCF{3,4,12}:-0.935527316007;HLF:-0.940424173307;SRF:-0.995372261166;NKX2-2,8:-1.00973512154;HIF1A:-1.01589202832;NFKB1_REL_RELA:-1.04993058292;E2F1..5:-1.07147417239;FOSL2:-1.09201967005;ELK1,4_GABP{A,B1}:-1.125987631;BACH2:-1.13460835531;ZNF148:-1.14237610639;RUNX1..3:-1.21527623942;FOS_FOS{B,L1}_JUN{B,D}:-1.23758033697;ESR1:-1.28709816006;GLI1..3:-1.35137271911;MYB:-1.37962858146;PAX1,9:-1.40533423911;POU2F1..3:-1.42244338203;RXRA_VDR{dimer}:-1.57482349057;HES1:-1.89183663049;PPARG:-2.0034618884;EN1,2:-2.08093201318;STAT5{A,B}:-2.13163487397;HOX{A5,B5}:-2.62189017899 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10155-103A2;search_select_hide=table117:FF:10155-103A2 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | medulla oblongata, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12315 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12315
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12315
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.038 |
| 10 | 10 | 0.0378 |
| 100 | 100 | 0.358 |
| 101 | 101 | 0.705 |
| 102 | 102 | 0.96 |
| 103 | 103 | 0.0502 |
| 104 | 104 | 0.0961 |
| 105 | 105 | 0.235 |
| 106 | 106 | 0.0299 |
| 107 | 107 | 0.153 |
| 108 | 108 | 0.789 |
| 109 | 109 | 0.00392 |
| 11 | 11 | 0.00798 |
| 110 | 110 | 0.0525 |
| 111 | 111 | 0.0547 |
| 112 | 112 | 0.391 |
| 113 | 113 | 0.31 |
| 114 | 114 | 0.0672 |
| 115 | 115 | 0.897 |
| 116 | 116 | 0.21 |
| 117 | 117 | 0.0108 |
| 118 | 118 | 0.152 |
| 119 | 119 | 0.23 |
| 12 | 12 | 0.621 |
| 120 | 120 | 0.132 |
| 121 | 121 | 0.718 |
| 122 | 122 | 0.989 |
| 123 | 123 | 0.834 |
| 124 | 124 | 0.283 |
| 125 | 125 | 0.361 |
| 126 | 126 | 0.0673 |
| 127 | 127 | 0.406 |
| 128 | 128 | 0.211 |
| 129 | 129 | 0.519 |
| 13 | 13 | 0.00584 |
| 130 | 130 | 0.417 |
| 131 | 131 | 0.0232 |
| 132 | 132 | 0.427 |
| 133 | 133 | 0.165 |
| 134 | 134 | 0.567 |
| 135 | 135 | 0.272 |
| 136 | 136 | 0.00496 |
| 137 | 137 | 0.829 |
| 138 | 138 | 0.729 |
| 139 | 139 | 0.0878 |
| 14 | 14 | 0.97 |
| 140 | 140 | 0.569 |
| 141 | 141 | 0.478 |
| 142 | 142 | 0.963 |
| 143 | 143 | 0.00847 |
| 144 | 144 | 0.954 |
| 145 | 145 | 0.212 |
| 146 | 146 | 0.694 |
| 147 | 147 | 0.788 |
| 148 | 148 | 0.188 |
| 149 | 149 | 0.107 |
| 15 | 15 | 0.0452 |
| 150 | 150 | 0.126 |
| 151 | 151 | 0.723 |
| 152 | 152 | 0.126 |
| 153 | 153 | 0.948 |
| 154 | 154 | 0.547 |
| 155 | 155 | 0.477 |
| 156 | 156 | 0.256 |
| 157 | 157 | 0.35 |
| 158 | 158 | 0.248 |
| 159 | 159 | 0.00729 |
| 16 | 16 | 0.0429 |
| 160 | 160 | 0.204 |
| 161 | 161 | 0.2 |
| 162 | 162 | 0.785 |
| 163 | 163 | 0.737 |
| 164 | 164 | 0.0132 |
| 165 | 165 | 0.215 |
| 166 | 166 | 0.722 |
| 167 | 167 | 0.632 |
| 168 | 168 | 0.72 |
| 169 | 169 | 0.0156 |
| 17 | 17 | 0.0825 |
| 18 | 18 | 0.0353 |
| 19 | 19 | 0.336 |
| 2 | 2 | 0.944 |
| 20 | 20 | 0.144 |
| 21 | 21 | 0.0304 |
| 22 | 22 | 0.311 |
| 23 | 23 | 0.563 |
| 24 | 24 | 0.117 |
| 25 | 25 | 0.565 |
| 26 | 26 | 7.91909e-4 |
| 27 | 27 | 0.637 |
| 28 | 28 | 0.822 |
| 29 | 29 | 0.00595 |
| 3 | 3 | 0.05 |
| 30 | 30 | 0.625 |
| 31 | 31 | 0.911 |
| 32 | 32 | 0.0104 |
| 33 | 33 | 0.084 |
| 34 | 34 | 0.785 |
| 35 | 35 | 0.442 |
| 36 | 36 | 0.169 |
| 37 | 37 | 0.0506 |
| 38 | 38 | 0.437 |
| 39 | 39 | 0.418 |
| 4 | 4 | 0.632 |
| 40 | 40 | 0.0783 |
| 41 | 41 | 0.178 |
| 42 | 42 | 0.227 |
| 43 | 43 | 0.124 |
| 44 | 44 | 0.112 |
| 45 | 45 | 0.821 |
| 46 | 46 | 0.0252 |
| 47 | 47 | 0.0389 |
| 48 | 48 | 0.0462 |
| 49 | 49 | 0.246 |
| 5 | 5 | 0.63 |
| 50 | 50 | 0.498 |
| 51 | 51 | 0.282 |
| 52 | 52 | 0.787 |
| 53 | 53 | 0.668 |
| 54 | 54 | 0.407 |
| 55 | 55 | 0.772 |
| 56 | 56 | 0.585 |
| 57 | 57 | 0.261 |
| 58 | 58 | 0.347 |
| 59 | 59 | 0.0922 |
| 6 | 6 | 0.937 |
| 60 | 60 | 0.117 |
| 61 | 61 | 0.136 |
| 62 | 62 | 0.166 |
| 63 | 63 | 0.24 |
| 64 | 64 | 0.143 |
| 65 | 65 | 0.287 |
| 66 | 66 | 0.0918 |
| 67 | 67 | 0.328 |
| 68 | 68 | 0.116 |
| 69 | 69 | 0.202 |
| 7 | 7 | 0.119 |
| 70 | 70 | 0.022 |
| 71 | 71 | 0.008 |
| 72 | 72 | 0.46 |
| 73 | 73 | 0.0472 |
| 74 | 74 | 0.94 |
| 75 | 75 | 0.0173 |
| 76 | 76 | 0.176 |
| 77 | 77 | 0.297 |
| 78 | 78 | 4.63738e-4 |
| 79 | 79 | 0.266 |
| 8 | 8 | 0.0514 |
| 80 | 80 | 0.827 |
| 81 | 81 | 0.499 |
| 82 | 82 | 0.637 |
| 83 | 83 | 0.0806 |
| 84 | 84 | 0.467 |
| 85 | 85 | 0.318 |
| 86 | 86 | 0.175 |
| 87 | 87 | 0.00105 |
| 88 | 88 | 0.74 |
| 89 | 89 | 0.158 |
| 9 | 9 | 0.58 |
| 90 | 90 | 0.057 |
| 91 | 91 | 0.552 |
| 92 | 92 | 0.514 |
| 93 | 93 | 0.756 |
| 94 | 94 | 0.101 |
| 95 | 95 | 0.0257 |
| 96 | 96 | 0.981 |
| 97 | 97 | 0.769 |
| 98 | 98 | 0.152 |
| 99 | 99 | 0.683 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12315
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010038 human medulla oblongata - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
