FF:10179-103C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005293 | ||
|accession_numbers=CAGE;DRX008706;DRR009578;DRZ001003;DRZ002388;DRZ012353;DRZ013738 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001905,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0002757,UBERON:0010134,UBERON:0002530,UBERON:0010317,UBERON:0005408,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949,UBERON:0001899 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010160 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.24!1733.00!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.08!1188.72!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.83!671.77!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.58!381.42!OTX2;;chr9:77112244..77112262,+!p1@RORB!2.38!263.57!RORB;;chr11:122852529..122852549,-!p1@BSX!2.36!226.07!BSX;;chr2:182545234..182545252,-!p1@NEUROD1!2.25!176.78!NEUROD1;;chr13:72441315..72441454,-!p1@DACH1!2.21!309.64!DACH1;;chr10:35484053..35484076,+!p1@CREM!2.20!379.81!CREM;;chr5:134871645..134871660,-!p1@NEUROG1!2.16!144.64!NEUROG1;;chr12:55413721..55413728,+!p3@NEUROD4!2.14!138.21!NEUROD4;;chr12:55413694..55413703,+!p2@NEUROD4!2.12!130.71!NEUROD4;;chr12:54779511..54779577,-!p5@ZNF385A!2.11!128.57!ZNF385A;;chr3:52002194..52002250,-!p5@PCBP4!2.08!118.93!PCBP4;;chr19:3772220..3772236,-!p1@RAX2!1.94!85.18!RAX2;;chr1:40105299..40105326,-!p1@HEYL!1.92!83.03!HEYL;;chr14:57277098..57277116,-!p3@OTX2!1.91!80.89!OTX2;;chr1:157069495..157069541,-!p2@ETV3L!1.87!73.93!ETV3L;;chr1:157069619..157069633,-!p3@ETV3L!1.85!69.64!ETV3L;;chr8:53166899..53166914,-!p3@ST18!1.80!62.14!ST18;;chr1:216896752..216896778,-!p1@ESRRG!1.79!60.00!ESRRG;;chr11:122852557..122852570,-!p2@BSX!1.77!57.32!BSX;;chr12:26277817..26277863,-!p2@BHLHE41!1.76!75.00!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.72!176.25!BHLHE41;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.43!ZNF483;;chr1:165414325..165414369,-!p1@RXRG!1.69!48.21!RXRG;;chr5:124084493..124084524,-!p2@ZNF608!1.66!98.03!ZNF608;;chr2:166326200..166326216,+!p1@CSRNP3!1.66!64.82!CSRNP3;;chr1:10754477..10754517,-!p1@CASZ1!1.64!69.11!CASZ1;;chr11:31832658..31832681,-!p1@PAX6!1.63!41.25!PAX6;;chr15:57511609..57511651,+!p2@TCF12!1.62!67.50!TCF12;;chr2:223163706..223163730,-!p1@PAX3!1.60!39.11!PAX3;;chr9:77112225..77112238,+!p2@RORB!1.59!37.50!RORB;;chr8:53162037..53162058,-!p5@ST18!1.54!33.75!ST18;;chr10:35484090..35484104,+!p6@CREM!1.53!33.21!CREM;;chr9:139094988..139095012,-!p1@LHX3!1.52!32.14!LHX3;;chr21:47063625..47063658,+!p1@PCBP3!1.51!130.71!PCBP3;;chr3:114173720..114173794,-!p6@ZBTB20!1.51!31.61!ZBTB20;;chr14:57277163..57277168,-!p4@OTX2!1.51!31.61!OTX2;;chr14:57272369..57272391,-!p2@OTX2!1.51!31.07!OTX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.07!ZNF385A;;chr13:72441074..72441172,-!p2@DACH1!1.48!29.46!DACH1;;chr7:63505799..63505904,+!p1@ZNF727!1.48!28.93!ZNF727;;chr1:180199393..180199426,+!p1@LHX4!1.47!28.39!LHX4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.39!ZBED1;;chr15:76629123..76629151,+!p1@ISL2!1.45!30.00!ISL2;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.64!SOX15;;chr15:61521417..61521460,-!p2@RORA!1.43!56.78!RORA;;chr17:37764128..37764258,-!p1@NEUROD2!1.41!24.64!NEUROD2;;chr1:244219775..244219893,+!p2@ZNF238!1.39!32.14!ZNF238;;chr1:8877692..8877732,-!p1@RERE!1.38!180.00!RERE;;chr8:135522475..135522486,-!p16@ZFAT!1.37!22.50!ZFAT;;chr7:100065686..100065701,-!p2@TSC22D4!1.34!20.89!TSC22D4;;chr11:31832610..31832639,-!p5@PAX6!1.34!20.89!PAX6;;chr10:64133910..64133925,+!p5@ZNF365!1.32!19.82!ZNF365;;chr1:157069555..157069569,-!p4@ETV3L!1.32!19.82!ETV3L;;chr19:54041669..54041697,+!p2@ZNF331!1.31!19.29!ZNF331;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.31!19.29!ZNF676;;chr17:53342311..53342400,+!p1@HLF!1.30!21.43!HLF;;chr21:34442439..34442455,+!p1@OLIG1!1.30!18.75!OLIG1;;chr2:157198916..157198978,-!p2@NR4A2!1.28!62.14!NR4A2;;chr12:26277929..26277955,-!p3@BHLHE41!1.27!25.18!BHLHE41;;chr19:38183208..38183225,-!p1@ZNF781!1.27!22.50!ZNF781;;chr19:38183228..38183242,-!p4@ZNF781!1.27!17.68!ZNF781;;chr20:62796052..62796067,+!p5@MYT1!1.27!17.68!MYT1;;chr8:22550982..22550999,-!p1@EGR3!1.25!47.14!EGR3;;chr9:109625401..109625458,+!p1@ZNF462!1.25!43.93!ZNF462;;chr13:72441506..72441562,-!p3@DACH1!1.25!16.61!DACH1;;chr16:67198633..67198671,+!p1@HSF4!1.25!16.61!HSF4;;chr19:38085768..38085821,+!p1@ZNF540!1.24!24.64!ZNF540;;chr7:74072135..74072171,+!p2@GTF2I!1.23!49.28!GTF2I;;chr3:128212033..128212051,-!p1@GATA2!1.23!16.07!GATA2;;chr3:128206762..128206781,-!p2@GATA2!1.22!94.82!GATA2;;chr7:149470641..149470694,-!p1@ZNF467!1.22!70.18!ZNF467;;chr17:38465441..38465481,+!p6@RARA!1.22!19.29!RARA;;chr22:38380543..38380569,-!p1@SOX10!1.22!15.54!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.21!117.85!NR1D1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.21!32.68!ZNF395;;chr1:151032142..151032195,+!p5@MLLT11!1.21!28.93!MLLT11;;chr10:64134120..64134183,+!p1@ZNF365!1.20!17.68!ZNF365;;chr12:54778471..54778528,-!p1@ZNF385A!1.20!15.00!ZNF385A;;chr20:20348740..20348757,+!p1@INSM1!1.20!15.00!INSM1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.19!14.46!PEG3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.19!14.46!SMARCE1;;chr19:22193731..22193751,-!p1@ZNF208!1.19!14.46!ZNF208;;chr10:64133934..64133954,+!p6@ZNF365!1.19!14.46!ZNF365;;chr7:73038839..73038862,-!p1@MLXIPL!1.19!14.46!MLXIPL;;chr8:40755333..40755352,-!p1@ZMAT4!1.19!14.46!ZMAT4;;chr20:62680984..62680999,-!p1@SOX18!1.18!18.75!SOX18;;chr21:34143999..34144016,-!p4@GCFC1!1.17!24.11!GCFC1;;ch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| |expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.24!1733.00!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.08!1188.72!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.83!671.77!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.58!381.42!OTX2;;chr9:77112244..77112262,+!p1@RORB!2.38!263.57!RORB;;chr11:122852529..122852549,-!p1@BSX!2.36!226.07!BSX;;chr2:182545234..182545252,-!p1@NEUROD1!2.25!176.78!NEUROD1;;chr13:72441315..72441454,-!p1@DACH1!2.21!309.64!DACH1;;chr10:35484053..35484076,+!p1@CREM!2.20!379.81!CREM;;chr5:134871645..134871660,-!p1@NEUROG1!2.16!144.64!NEUROG1;;chr12:55413721..55413728,+!p3@NEUROD4!2.14!138.21!NEUROD4;;chr12:55413694..55413703,+!p2@NEUROD4!2.12!130.71!NEUROD4;;chr12:54779511..54779577,-!p5@ZNF385A!2.11!128.57!ZNF385A;;chr3:52002194..52002250,-!p5@PCBP4!2.08!118.93!PCBP4;;chr19:3772220..3772236,-!p1@RAX2!1.94!85.18!RAX2;;chr1:40105299..40105326,-!p1@HEYL!1.92!83.03!HEYL;;chr14:57277098..57277116,-!p3@OTX2!1.91!80.89!OTX2;;chr1:157069495..157069541,-!p2@ETV3L!1.87!73.93!ETV3L;;chr1:157069619..157069633,-!p3@ETV3L!1.85!69.64!ETV3L;;chr8:53166899..53166914,-!p3@ST18!1.80!62.14!ST18;;chr1:216896752..216896778,-!p1@ESRRG!1.79!60.00!ESRRG;;chr11:122852557..122852570,-!p2@BSX!1.77!57.32!BSX;;chr12:26277817..26277863,-!p2@BHLHE41!1.76!75.00!BHLHE41;;chr12:26277956..26277980,-!p1@BHLHE41!1.72!176.25!BHLHE41;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.43!ZNF483;;chr1:165414325..165414369,-!p1@RXRG!1.69!48.21!RXRG;;chr5:124084493..124084524,-!p2@ZNF608!1.66!98.03!ZNF608;;chr2:166326200..166326216,+!p1@CSRNP3!1.66!64.82!CSRNP3;;chr1:10754477..10754517,-!p1@CASZ1!1.64!69.11!CASZ1;;chr11:31832658..31832681,-!p1@PAX6!1.63!41.25!PAX6;;chr15:57511609..57511651,+!p2@TCF12!1.62!67.50!TCF12;;chr2:223163706..223163730,-!p1@PAX3!1.60!39.11!PAX3;;chr9:77112225..77112238,+!p2@RORB!1.59!37.50!RORB;;chr8:53162037..53162058,-!p5@ST18!1.54!33.75!ST18;;chr10:35484090..35484104,+!p6@CREM!1.53!33.21!CREM;;chr9:139094988..139095012,-!p1@LHX3!1.52!32.14!LHX3;;chr21:47063625..47063658,+!p1@PCBP3!1.51!130.71!PCBP3;;chr3:114173720..114173794,-!p6@ZBTB20!1.51!31.61!ZBTB20;;chr14:57277163..57277168,-!p4@OTX2!1.51!31.61!OTX2;;chr14:57272369..57272391,-!p2@OTX2!1.51!31.07!OTX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.07!ZNF385A;;chr13:72441074..72441172,-!p2@DACH1!1.48!29.46!DACH1;;chr7:63505799..63505904,+!p1@ZNF727!1.48!28.93!ZNF727;;chr1:180199393..180199426,+!p1@LHX4!1.47!28.39!LHX4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.47!28.39!ZBED1;;chr15:76629123..76629151,+!p1@ISL2!1.45!30.00!ISL2;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.64!SOX15;;chr15:61521417..61521460,-!p2@RORA!1.43!56.78!RORA;;chr17:37764128..37764258,-!p1@NEUROD2!1.41!24.64!NEUROD2;;chr1:244219775..244219893,+!p2@ZNF238!1.39!32.14!ZNF238;;chr1:8877692..8877732,-!p1@RERE!1.38!180.00!RERE;;chr8:135522475..135522486,-!p16@ZFAT!1.37!22.50!ZFAT;;chr7:100065686..100065701,-!p2@TSC22D4!1.34!20.89!TSC22D4;;chr11:31832610..31832639,-!p5@PAX6!1.34!20.89!PAX6;;chr10:64133910..64133925,+!p5@ZNF365!1.32!19.82!ZNF365;;chr1:157069555..157069569,-!p4@ETV3L!1.32!19.82!ETV3L;;chr19:54041669..54041697,+!p2@ZNF331!1.31!19.29!ZNF331;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.31!19.29!ZNF676;;chr17:53342311..53342400,+!p1@HLF!1.30!21.43!HLF;;chr21:34442439..34442455,+!p1@OLIG1!1.30!18.75!OLIG1;;chr2:157198916..157198978,-!p2@NR4A2!1.28!62.14!NR4A2;;chr12:26277929..26277955,-!p3@BHLHE41!1.27!25.18!BHLHE41;;chr19:38183208..38183225,-!p1@ZNF781!1.27!22.50!ZNF781;;chr19:38183228..38183242,-!p4@ZNF781!1.27!17.68!ZNF781;;chr20:62796052..62796067,+!p5@MYT1!1.27!17.68!MYT1;;chr8:22550982..22550999,-!p1@EGR3!1.25!47.14!EGR3;;chr9:109625401..109625458,+!p1@ZNF462!1.25!43.93!ZNF462;;chr13:72441506..72441562,-!p3@DACH1!1.25!16.61!DACH1;;chr16:67198633..67198671,+!p1@HSF4!1.25!16.61!HSF4;;chr19:38085768..38085821,+!p1@ZNF540!1.24!24.64!ZNF540;;chr7:74072135..74072171,+!p2@GTF2I!1.23!49.28!GTF2I;;chr3:128212033..128212051,-!p1@GATA2!1.23!16.07!GATA2;;chr3:128206762..128206781,-!p2@GATA2!1.22!94.82!GATA2;;chr7:149470641..149470694,-!p1@ZNF467!1.22!70.18!ZNF467;;chr17:38465441..38465481,+!p6@RARA!1.22!19.29!RARA;;chr22:38380543..38380569,-!p1@SOX10!1.22!15.54!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.21!117.85!NR1D1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.21!32.68!ZNF395;;chr1:151032142..151032195,+!p5@MLLT11!1.21!28.93!MLLT11;;chr10:64134120..64134183,+!p1@ZNF365!1.20!17.68!ZNF365;;chr12:54778471..54778528,-!p1@ZNF385A!1.20!15.00!ZNF385A;;chr20:20348740..20348757,+!p1@INSM1!1.20!15.00!INSM1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.19!14.46!PEG3;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.19!14.46!SMARCE1;;chr19:22193731..22193751,-!p1@ZNF208!1.19!14.46!ZNF208;;chr10:64133934..64133954,+!p6@ZNF365!1.19!14.46!ZNF365;;chr7:73038839..73038862,-!p1@MLXIPL!1.19!14.46!MLXIPL;;chr8:40755333..40755352,-!p1@ZMAT4!1.19!14.46!ZMAT4;;chr20:62680984..62680999,-!p1@SOX18!1.18!18.75!SOX18;;chr21:34143999..34144016,-!p4@GCFC1!1.17!24.11!GCFC1;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.82!ZBTB16;;chr15:61521462..61521482,-!p4@RORA!1.17!13.93!RORA;;chr3:114819124..114819200,-!p3@ZBTB20!1.16!31.61!ZBTB20;;chr11:8102846..8102892,+!p1@TUB!1.16!18.75!TUB;;chr12:24715376..24715432,-!p1@SOX5!1.16!17.14!SOX5;;chr1:10856639..10856662,-!p2@CASZ1!1.16!13.39!CASZ1;;chr14:73360799..73360817,-!p1@DPF3!1.15!45.53!DPF3;;chr17:36861675..36861697,+!p3@MLLT6!1.14!30.00!MLLT6;;chr12:54785054..54785072,-!p4@ZNF385A!1.14!14.46!ZNF385A;;chr19:46801639..46801699,+!p1@HIF3A!1.14!12.86!HIF3A;;chr2:95963052..95963106,+!p1@KCNIP3!1.14!12.86!KCNIP3;;chr3:114173654..114173696,-!p12@ZBTB20!1.14!12.86!ZBTB20;;chr3:147127142..147127168,+!p1@ZIC1!1.14!12.86!ZIC1;;chr3:181429704..181429722,+!p1@SOX2!1.14!12.86!SOX2;;chr1:61548225..61548299,+!p1@NFIA!1.13!162.32!NFIA;;chrX:118739835..118739862,-!p1@NKRF!1.13!13.93!NKRF;;chr17:53344945..53344977,+!p2@HLF!1.12!12.32!HLF;;chr10:64134045..64134083,+!p3@ZNF365!1.12!12.32!ZNF365;;chr11:8040739..8040815,+!p4@TUB!1.12!12.32!TUB;;chr11:31832862..31832884,-!p2@PAX6!1.11!11.79!PAX6;;chr15:61521495..61521506,-!p5@RORA!1.11!11.79!RORA;;chr19:13135582..13135600,+!p3@NFIX!1.11!11.79!NFIX;;chr17:36861496..36861586,+!p1@MLLT6!1.09!108.75!MLLT6;;chr1:61548069..61548102,+!p3@NFIA!1.09!27.32!NFIA;;chr9:102584128..102584144,+!p3@NR4A3!1.09!21.43!NR4A3;;chr14:33408072..33408114,+!p2@NPAS3!1.09!13.39!NPAS3;;chr12:106976774..106976788,+!p1@RFX4!1.09!11.25!RFX4;;chr16:67197654..67197716,+!p3@HSF4!1.09!11.25!HSF4;;chr5:124084466..124084484,-!p6@ZNF608!1.09!11.25!ZNF608;;chr1:14075903..14075940,+!p1@PRDM2!1.08!237.32!PRDM2;;chr1:61547894..61547968,+!p2@NFIA!1.08!32.68!NFIA;;chr1:151032782..151032801,+!p4@MLLT11!1.08!21.96!MLLT11;;chr14:21994337..21994442,-!p1@SALL2!1.07!30.00!SALL2;;chr1:40105347..40105358,-!p2@HEYL!1.07!10.71!HEYL;;chr16:51185318..51185348,-!p2@SALL1!1.07!10.71!SALL1;;chr22:21771656..21771662,+!p1@HIC2!1.07!10.71!HIC2;;chr3:52001448..52001478,-!p2@PCBP4!1.06!145.71!PCBP4;;chr5:88178983..88179012,-!p1@MEF2C!1.06!80.89!MEF2C;;chr4:87928413..87928433,+!p3@AFF1!1.06!65.36!AFF1;;chr3:18466787..18466839,-!p1@SATB1!1.06!47.14!SATB1;;chrX:84498989..84499003,+!p1@ZNF711!1.06!14.46!ZNF711;;chr5:124081008..124081016,-!p28@ZNF608!1.05!10.18!ZNF608;;chr1:8877735..8877760,-!p8@RERE!1.04!27.32!RERE;;chr10:111987079..111987115,+!p3@MXI1!1.04!13.93!MXI1;;chr17:38465413..38465438,+!p5@RARA!1.03!15.54!RARA;;chr22:41763452..41763466,+!p2@TEF!1.03!9.64!TEF;;chr3:114173964..114173975,-!p36@ZBTB20!1.03!9.64!ZBTB20;;chr15:60884706..60884743,-!p1@RORA!1.02!49.82!RORA;;chr14:21994449..21994524,-!p2@SALL2!1.02!28.93!SALL2;;chr1:226595648..226595659,-!p3@PARP1!1.01!15.54!PARP1;;chr2:74229812..74229867,+!p1@TET3!1.00!23.04!TET3;;chr1:61548118..61548129,+!p9@NFIA!1.00!10.18!NFIA;;chr19:58545369..58545404,+!p2@ZSCAN1!1.00!9.11!ZSCAN1;;chr12:24102576..24102623,-!p2@SOX5!1.00!9.11!SOX5;;chr19:13135386..13135435,+!p4@NFIX!1.00!9.11!NFIX;;chr8:53162019..53162028,-!p12@ST18!1.00!9.11!ST18;;chr1:90460661..90460745,+!p1@ZNF326!0.99!250.71!ZNF326;;chr17:38256877..38256900,-!p2@NR1D1!0.99!28.93!NR1D1;;chr6:91006518..91006570,-!p1@BACH2!0.99!20.36!BACH2;;chr9:115818951..115819011,-!p1@ZFP37!0.98!26.79!ZFP37;;chr12:12764947..12764986,+!p2@CREBL2!0.98!17.14!CREBL2;;chr2:145277882..145277967,-!p3@ZEB2!0.98!15.00!ZEB2;;chr19:37998036..37998098,+!p2@ZNF793!0.98!10.71!ZNF793;;chr16:30406101..30406114,+!p6@ZNF48!0.98!8.57!ZNF48;;chr2:182545296..182545307,-!p3@NEUROD1!0.98!8.57!NEUROD1;;chr1:10856665..10856683,-!p4@CASZ1!0.98!8.57!CASZ1;;chr1:10856694..10856715,-!p3@CASZ1!0.98!8.57!CASZ1;;chr19:20150029..20150078,-!p3@ZNF682!0.96!14.46!ZNF682;;chr17:7387459..7387470,-!p10@ZBTB4!0.96!8.04!ZBTB4;;chr19:3772263..3772274,-!p2@RAX2!0.96!8.04!RAX2;;chr1:216896780..216896800,-!p2@ESRRG!0.96!8.04!ESRRG;;chr11:31839488..31839515,-!p3@PAX6!0.96!8.04!PAX6;;chr12:106976678..106976708,+!p2@RFX4!0.96!8.04!RFX4;;chr14:21562671..21562702,-!p8@ZNF219!0.96!8.04!ZNF219;;chr9:139095030..139095040,-!p4@LHX3!0.96!8.04!LHX3;;chr2:182545282..182545294,-!p2@NEUROD1!0.96!8.04!NEUROD1;;chr6:157099036..157099067,+!p5@ARID1B!0.95!20.89!ARID1B;;chr12:52430894..52430952,+!p3@NR4A1!0.95!15.54!NR4A1;;chr17:38256799..38256815,-!p3@NR1D1!0.95!14.46!NR1D1;;chr7:74072175..74072188,+!p6@GTF2I!0.95!11.25!GTF2I;;chr12:52445218..52445237,+!p1@NR4A1!0.94!100.18!NR4A1;;chr17:40897043..40897087,-!p1@EZH1!0.94!70.71!EZH1;;chr10:35484804..35484902,+!p2@CREM!0.94!30.54!CREM;;chr5:139494712..139494759,+!p5@PURA!0.94!13.39!PURA;;chr7:86781858..86781879,+!p3@DMTF1!0.94!12.86!DMTF1;;chr5:178368186..178368238,+!p1@ZNF454!0.93!13.93!ZNF454;;chr2:214016314..214016343,-!p2@IKZF2!0.93!12.86!IKZF2;;chr14:75894391..75894435,+!p2@JDP2!0.93!8.57!JDP2;;chr19:57183114..57183145,-!p1@ZNF835!0.93!8.57!ZNF835;;chr1:209979467..209979494,-!p1@IRF6!0.93!8.57!IRF6;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.93!7.50!ZBTB8B;;chr21:34442540..34442560,+!p2@OLIG1!0.93!7.50!OLIG1;;chr13:72440901..72440968,-!p4@DACH1!0.93!7.50!DACH1;;chr14:58797974..587980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!RFX4;;chr12:111471962..111471975,+!p2@CUX2!0.42!1.61!CUX2;;chr12:26276197..26276214,-!p8@BHLHE41!0.42!1.61!BHLHE41;;chr12:57504069..57504090,-!p7@STAT6!0.42!1.61!STAT6;;chr13:72440880..72440895,-!p7@DACH1!0.42!1.61!DACH1;;chr13:72441259..72441268,-!p8@DACH1!0.42!1.61!DACH1;;chr13:72441289..72441300,-!p13@DACH1!0.42!1.61!DACH1;;chr14:23762777..23762821,-!p3@HOMEZ!0.42!1.61!HOMEZ;;chr14:24553835..24553850,-!p1@NRL!0.42!1.61!NRL;;chr19:38183138..38183157,-!p2@ZNF781!0.42!1.61!ZNF781;;chr19:48342870..48342880,+!p3@CRX!0.42!1.61!CRX;;chr19:49140645..49140654,-!p6@DBP!0.42!1.61!DBP;;chr19:54041467..54041479,+!p13@ZNF331!0.42!1.61!ZNF331;;chr1:164529004..164529015,+!p15@PBX1!0.42!1.61!PBX1;;chr1:170633100..170633112,+!p19@PRRX1!0.42!1.61!PRRX1;;chr1:61542891..61542920,+!p12@NFIA!0.42!1.61!NFIA;;chr1:61869797..61869816,+!p18@NFIA!0.42!1.61!NFIA;;chr21:34442584..34442587,+!p3@OLIG1!0.42!1.61!OLIG1;;chr6:134274354..134274371,+!p1@TBPL1!0.41!61.07!TBPL1;;chr3:107241792..107241845,+!p1@BBX!0.41!52.50!BBX;;chr10:63809106..63809127,+!p1@ARID5B!0.41!31.07!ARID5B;;chr6:126112074..126112144,+!p1@NCOA7!0.41!30.54!NCOA7;;chr10:38383255..38383324,+!p1@ZNF37A!0.41!21.43!ZNF37A;;chr19:12175535..12175554,+!p1@ZNF844!0.41!12.32!ZNF844;;chr10:31320777..31320834,-!p1@ZNF438!0.41!11.25!ZNF438;;chr10:35415978..35416050,+!p5@CREM!0.41!9.11!CREM;;chr19:37341752..37341816,+!p1@ZNF345!0.41!6.43!ZNF345;;chr4:1873155..1873185,+!p3@WHSC1!0.41!5.89!WHSC1;;chr2:148778973..148779035,+!p3@MBD5!0.41!5.36!MBD5;;chr10:35415761..35415800,+!p7@CREM!0.41!5.36!CREM;;chr5:124082322..124082364,-!p1@ZNF608!0.41!5.36!ZNF608;;chr7:137563945..137564001,-!p6@CREB3L2!0.41!4.82!CREB3L2;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.41!4.29!ZKSCAN1;;chr3:23986748..23986761,+!p3@NR1D2!0.41!4.29!NR1D2;;chr1:151043266..151043295,+!p2@GABPB2!0.41!4.29!GABPB2;;chr1:45805372..45805413,+!p4@TOE1!0.41!4.29!TOE1;;chr12:133707021..133707071,-!p2@ZNF891!0.41!3.21!ZNF891;;chr8:71316428..71316459,-!p2@NCOA2!0.41!3.21!NCOA2;;chr19:12476469..12476509,-!p2@ZNF442!0.41!3.21!ZNF442;;chr19:37960314..37960329,+!p3@ZNF570!0.41!2.14!ZNF570;;chr8:116681108..116681120,-!p9@TRPS1!0.41!2.14!TRPS1;;chr8:116681275..116681290,-!p11@TRPS1!0.41!2.14!TRPS1;;chr8:81397820..81397836,+!p2@ZBTB10!0.41!2.14!ZBTB10;;chr16:89939979..89940011,+!p2@TCF25!0.40!88.39!TCF25;;chr17:40428359..40428462,-!p1@STAT5B!0.40!28.93!STAT5B;;chr22:31742303..31742350,-!p1@PATZ1!0.40!24.64!PATZ1;;chr18:32820990..32821031,+!p1@ZNF397!0.40!22.50!ZNF397;;chr4:106068026..106068084,+!p1@TET2!0.40!19.82!TET2;;chr19:52408257..52408278,-!p1@ZNF649!0.40!14.46!ZNF649;;chr1:33005020..33005077,+!p1@ZBTB8A!0.40!11.79!ZBTB8A;;chr17:2304365..2304388,-!p2@MNT!0.40!10.18!MNT;;chr19:11998584..11998649,+!p1@ZNF69!0.40!9.64!ZNF69;;chr19:2819854..2819891,+!p1@ZNF554!0.40!7.50!ZNF554;;chr19:24097675..24097699,+!p1@ZNF726!0.40!6.96!ZNF726;;chr20:3388207..3388236,-!p4@C20orf194!0.40!4.82!C20orf194;;chr6:20403727..20403769,+!p4@E2F3!0.40!4.82!E2F3;;chr10:98592674..98592724,+!p2@LCOR!0.40!3.75!LCOR;;chr6:157099159..157099185,+!p6@ARID1B!0.40!3.21!ARID1B;;chr7:6655225..6655279,+!p1@ENST00000457543!0.40!2.68!ZNF853;;chr14:64970593..64970627,+!p5@ZBTB1!0.40!2.68!ZBTB1;;chr4:331619..331630,+!p2@ZNF141!0.40!2.68!ZNF141;;chr19:53496806..53496848,-!p2@ZNF702P!0.40!2.68!ZNF702P;;chr18:52989565..52989623,-!p9@TCF4!0.40!2.14!TCF4;;chr18:6414884..6414942,-!p1@L3MBTL4!0.40!2.14!L3MBTL4;;chrX:76938351..76938379,-!p7@ATRX!0.40!2.14!ATRX;;chr1:78444738..78444773,-!p1@FUBP1!0.39!240.53!FUBP1;;chr2:46524537..46524553,+!p1@EPAS1!0.39!218.57!EPAS1;;chr2:220094514..220094599,+!p1@ANKZF1!0.39!63.75!ANKZF1;;chr19:52873166..52873208,+!p1@ZNF880!0.39!30.54!ZNF880;;chr16:69599899..69599919,+!p2@NFAT5!0.39!25.18!NFAT5;;chr16:69419749..69419786,-!p2@TERF2!0.39!12.32!TERF2;;chr19:37701396..37701453,-!p1@ZNF585B!0.39!12.32!ZNF585B;;chr19:58694421..58694485,+!p1@ZNF274!0.39!11.25!ZNF274;;chr19:36909528..36909581,-!p1@ZFP82!0.39!9.64!ZFP82;;chr19:56915668..56915732,+!p1@ZNF583!0.39!7.50!ZNF583;;chr10:97890024..97890064,+!p2@ZNF518A!0.39!5.36!ZNF518A;;chr12:57919293..57919311,+!p3@MBD6!0.39!5.36!MBD6;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001905;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010133 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13804.10179-103C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10179-103C8 | |id=FF:10179-103C8 | ||
|is_a=EFO:0002091;;FF:0010160 | |is_a=EFO:0002091;;FF:0010160 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13804 | |||
|library_id_phase_based=2:CNhs13804 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10179 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10179 | |||
|name=pineal gland - adult, donor10196 | |name=pineal gland - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.025988873367824,0,0.43112295744546,0.561257909681162,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.158132370869462,0,0.318200710832925,0,0,0.6320646240763,0,0,0,0,0,0,0,0,0,0,0,0,0.17213706764853,0.18630690345421,0,0,0,0,0,0,0,0.0689384306142705,0,0,0,0,0,0.0765292791648726,0.18630690345421,0.219272380496318,0,0,0.0889632762411131,0,0,0,0,0,0,0,0,0.18630690345421,0,0,0,0,0.18630690345421,0,0,0,0.0724696003005759,0,0,0,0,0,0.0523466272913578,0.18630690345421,0.929410020148744,0,0.18630690345421,0.367606059449097,0.34981961590112,0.248658879625304,0,0,0,-0.0980353512377064,0.280718123678963,0,0,0,0,0,0,0.18630690345421,0,0,0,0,0,0,0,0,0,0,-0.00322014219535594,0.18630690345421,0,0,0.171138669898522,0.110980787156841,0,0,0.0024653880086182,0,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 58: | Line 79: | ||
|rna_weight_ug=78.32925 | |rna_weight_ug=78.32925 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 101: | ||
|top_motifs=CRX:7.63400496955;VSX1,2:4.5074497961;RORA:4.21378026272;LHX3,4:3.49931685646;PRRX1,2:2.78010387019;POU6F1:2.70112901351;HOX{A6,A7,B6,B7}:2.68603105882;JUN:2.68047529232;GCM1,2:2.6241858744;ALX1:2.4523895107;AHR_ARNT_ARNT2:2.36636258528;ZFP161:2.34901007233;FOXP3:2.28273664396;DBP:2.25161595797;REST:2.19236301295;MED-1{core}:2.16741077361;GFI1B:1.96873519887;RREB1:1.96864005446;ATF2:1.95639450437;MYFfamily:1.93106506851;HOXA9_MEIS1:1.86318055969;CUX2:1.83532672423;NANOG:1.83151971163;ESRRA:1.82502395656;GFI1:1.82103256524;HBP1_HMGB_SSRP1_UBTF:1.79441511424;POU3F1..4:1.77151251612;HOX{A4,D4}:1.72359006749;EGR1..3:1.71955423768;TGIF1:1.71942379746;CREB1:1.67442629407;ZBTB6:1.65222032974;PATZ1:1.60520887218;ADNP_IRX_SIX_ZHX:1.52183906775;MTF1:1.50371166872;MYOD1:1.4998681021;ALX4:1.46964977428;ATF5_CREB3:1.4268562334;BREu{core}:1.4117366152;NRF1:1.30342089226;NKX3-2:1.30175910774;T:1.29480121273;TFAP2B:1.26275779709;HIC1:1.26257234352;MZF1:1.26249190931;PRDM1:1.19806619276;FOXN1:1.19606948389;FOXM1:1.19407846589;GTF2I:1.17440347934;ATF4:1.17142254756;MAZ:1.16113021308;SOX2:1.08102996248;SOX17:1.0634564858;FOX{D1,D2}:1.05161346931;RFX1:1.04981402523;ATF6:1.02114036697;LMO2:0.969437142584;GATA4:0.958301541425;PAX1,9:0.936036469618;IKZF2:0.934318263215;NHLH1,2:0.927593061642;AR:0.924652079477;GATA6:0.904027420859;SREBF1,2:0.867043701666;YY1:0.848897614683;PAX3,7:0.847959365042;BPTF:0.838476329328;RBPJ:0.8296535862;PITX1..3:0.81619098444;PAX6:0.805494303839;SMAD1..7,9:0.802362558396;GTF2A1,2:0.790107846432;CDC5L:0.778387980157;OCT4_SOX2{dimer}:0.776329628919;PPARG:0.755541062484;RFX2..5_RFXANK_RFXAP:0.732327880797;MEF2{A,B,C,D}:0.728830639763;NKX2-3_NKX2-5:0.634274731929;TLX1..3_NFIC{dimer}:0.624293410545;NR1H4:0.565380431827;ZBTB16:0.563192284092;MTE{core}:0.553251123967;PAX5:0.546490300398;SOX5:0.537520908559;TFAP2{A,C}:0.529188302648;SP1:0.520669964651;NFE2L1:0.506121105623;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.454729078553;NFIX:0.439419470527;XBP1:0.408198797648;FOXA2:0.394507519013;KLF4:0.386415557886;HIF1A:0.373601824071;TAL1_TCF{3,4,12}:0.365852659021;FOXL1:0.288915975396;ZNF143:0.251033603309;NKX2-1,4:0.244703991825;SPZ1:0.235702112469;EBF1:0.221619094865;ZIC1..3:0.219944715626;SOX{8,9,10}:0.194412230543;GZF1:0.186716398881;NKX6-1,2:0.148329418562;NFE2L2:0.141600937748;STAT1,3:0.140191180568;ONECUT1,2:0.138044465924;ARID5B:0.136307311195;ZEB1:0.126271146149;NFIL3:0.124416939545;NFY{A,B,C}:0.0992891735508;POU5F1:0.0979231896868;STAT5{A,B}:0.0865516378458;PAX8:0.0683854253228;PAX2:0.0651743669781;EVI1:0.0620436517341;NR5A1,2:0.0612494045076;FOX{I1,J2}:0.0463362983078;RXR{A,B,G}:-0.00235491334097;TFCP2:-0.00945384351973;FOXQ1:-0.0826027191667;ZNF423:-0.0931437851861;FOXP1:-0.104955282254;HMX1:-0.107251097169;NFE2:-0.108287510892;HAND1,2:-0.176579087719;HNF1A:-0.180756212415;LEF1_TCF7_TCF7L1,2:-0.185479420763;MYBL2:-0.193713145941;PAX4:-0.199912584392;EP300:-0.223363500727;PBX1:-0.256460748342;TFDP1:-0.261954567886;TLX2:-0.265389156694;PDX1:-0.270453566949;SNAI1..3:-0.271318820456;FOSL2:-0.303285571632;NKX3-1:-0.318372189974;ELK1,4_GABP{A,B1}:-0.369996404261;IRF1,2:-0.382763213312;NFATC1..3:-0.389659462649;CDX1,2,4:-0.412150148311;FOXO1,3,4:-0.428979513089;CEBPA,B_DDIT3:-0.436861163524;NANOG{mouse}:-0.446838720482;NKX2-2,8:-0.4629796575;MAFB:-0.464988189314;HSF1,2:-0.478665012232;FOX{F1,F2,J1}:-0.493987550917;IKZF1:-0.513430289971;GLI1..3:-0.529267658606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.529753625571;IRF7:-0.538072334972;NR3C1:-0.565317163823;AIRE:-0.598697799083;BACH2:-0.603338671177;XCPE1{core}:-0.605117074509;ZNF384:-0.613099650914;FOS_FOS{B,L1}_JUN{B,D}:-0.623228819024;SPI1:-0.641693685039;HMGA1,2:-0.656656483417;TEAD1:-0.65824162909;STAT2,4,6:-0.692984463097;bHLH_family:-0.696545115733;UFEwm:-0.700970263944;SPIB:-0.70436133097;TOPORS:-0.720955495925;HLF:-0.724588364253;HNF4A_NR2F1,2:-0.761673192304;NFKB1_REL_RELA:-0.778278198632;TBX4,5:-0.785811221686;SRF:-0.819039955329;DMAP1_NCOR{1,2}_SMARC:-0.846352875851;RXRA_VDR{dimer}:-0.8511316588;POU1F1:-0.861937836879;ETS1,2:-0.884281796178;TFAP4:-0.964106524377;TBP:-0.970841638744;TP53:-1.00695355772;ELF1,2,4:-1.2013294548;MYB:-1.23203987002;POU2F1..3:-1.23628898389;TEF:-1.24171973727;ESR1:-1.24211364206;RUNX1..3:-1.27075544692;E2F1..5:-1.31540358582;HOX{A5,B5}:-1.45774914231;NR6A1:-1.6051576633;ZNF238:-1.76140018488;ZNF148:-1.99002475277;FOXD3:-2.02200911887;EN1,2:-2.48078459305;HES1:-3.16738939215 | |top_motifs=CRX:7.63400496955;VSX1,2:4.5074497961;RORA:4.21378026272;LHX3,4:3.49931685646;PRRX1,2:2.78010387019;POU6F1:2.70112901351;HOX{A6,A7,B6,B7}:2.68603105882;JUN:2.68047529232;GCM1,2:2.6241858744;ALX1:2.4523895107;AHR_ARNT_ARNT2:2.36636258528;ZFP161:2.34901007233;FOXP3:2.28273664396;DBP:2.25161595797;REST:2.19236301295;MED-1{core}:2.16741077361;GFI1B:1.96873519887;RREB1:1.96864005446;ATF2:1.95639450437;MYFfamily:1.93106506851;HOXA9_MEIS1:1.86318055969;CUX2:1.83532672423;NANOG:1.83151971163;ESRRA:1.82502395656;GFI1:1.82103256524;HBP1_HMGB_SSRP1_UBTF:1.79441511424;POU3F1..4:1.77151251612;HOX{A4,D4}:1.72359006749;EGR1..3:1.71955423768;TGIF1:1.71942379746;CREB1:1.67442629407;ZBTB6:1.65222032974;PATZ1:1.60520887218;ADNP_IRX_SIX_ZHX:1.52183906775;MTF1:1.50371166872;MYOD1:1.4998681021;ALX4:1.46964977428;ATF5_CREB3:1.4268562334;BREu{core}:1.4117366152;NRF1:1.30342089226;NKX3-2:1.30175910774;T:1.29480121273;TFAP2B:1.26275779709;HIC1:1.26257234352;MZF1:1.26249190931;PRDM1:1.19806619276;FOXN1:1.19606948389;FOXM1:1.19407846589;GTF2I:1.17440347934;ATF4:1.17142254756;MAZ:1.16113021308;SOX2:1.08102996248;SOX17:1.0634564858;FOX{D1,D2}:1.05161346931;RFX1:1.04981402523;ATF6:1.02114036697;LMO2:0.969437142584;GATA4:0.958301541425;PAX1,9:0.936036469618;IKZF2:0.934318263215;NHLH1,2:0.927593061642;AR:0.924652079477;GATA6:0.904027420859;SREBF1,2:0.867043701666;YY1:0.848897614683;PAX3,7:0.847959365042;BPTF:0.838476329328;RBPJ:0.8296535862;PITX1..3:0.81619098444;PAX6:0.805494303839;SMAD1..7,9:0.802362558396;GTF2A1,2:0.790107846432;CDC5L:0.778387980157;OCT4_SOX2{dimer}:0.776329628919;PPARG:0.755541062484;RFX2..5_RFXANK_RFXAP:0.732327880797;MEF2{A,B,C,D}:0.728830639763;NKX2-3_NKX2-5:0.634274731929;TLX1..3_NFIC{dimer}:0.624293410545;NR1H4:0.565380431827;ZBTB16:0.563192284092;MTE{core}:0.553251123967;PAX5:0.546490300398;SOX5:0.537520908559;TFAP2{A,C}:0.529188302648;SP1:0.520669964651;NFE2L1:0.506121105623;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.454729078553;NFIX:0.439419470527;XBP1:0.408198797648;FOXA2:0.394507519013;KLF4:0.386415557886;HIF1A:0.373601824071;TAL1_TCF{3,4,12}:0.365852659021;FOXL1:0.288915975396;ZNF143:0.251033603309;NKX2-1,4:0.244703991825;SPZ1:0.235702112469;EBF1:0.221619094865;ZIC1..3:0.219944715626;SOX{8,9,10}:0.194412230543;GZF1:0.186716398881;NKX6-1,2:0.148329418562;NFE2L2:0.141600937748;STAT1,3:0.140191180568;ONECUT1,2:0.138044465924;ARID5B:0.136307311195;ZEB1:0.126271146149;NFIL3:0.124416939545;NFY{A,B,C}:0.0992891735508;POU5F1:0.0979231896868;STAT5{A,B}:0.0865516378458;PAX8:0.0683854253228;PAX2:0.0651743669781;EVI1:0.0620436517341;NR5A1,2:0.0612494045076;FOX{I1,J2}:0.0463362983078;RXR{A,B,G}:-0.00235491334097;TFCP2:-0.00945384351973;FOXQ1:-0.0826027191667;ZNF423:-0.0931437851861;FOXP1:-0.104955282254;HMX1:-0.107251097169;NFE2:-0.108287510892;HAND1,2:-0.176579087719;HNF1A:-0.180756212415;LEF1_TCF7_TCF7L1,2:-0.185479420763;MYBL2:-0.193713145941;PAX4:-0.199912584392;EP300:-0.223363500727;PBX1:-0.256460748342;TFDP1:-0.261954567886;TLX2:-0.265389156694;PDX1:-0.270453566949;SNAI1..3:-0.271318820456;FOSL2:-0.303285571632;NKX3-1:-0.318372189974;ELK1,4_GABP{A,B1}:-0.369996404261;IRF1,2:-0.382763213312;NFATC1..3:-0.389659462649;CDX1,2,4:-0.412150148311;FOXO1,3,4:-0.428979513089;CEBPA,B_DDIT3:-0.436861163524;NANOG{mouse}:-0.446838720482;NKX2-2,8:-0.4629796575;MAFB:-0.464988189314;HSF1,2:-0.478665012232;FOX{F1,F2,J1}:-0.493987550917;IKZF1:-0.513430289971;GLI1..3:-0.529267658606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.529753625571;IRF7:-0.538072334972;NR3C1:-0.565317163823;AIRE:-0.598697799083;BACH2:-0.603338671177;XCPE1{core}:-0.605117074509;ZNF384:-0.613099650914;FOS_FOS{B,L1}_JUN{B,D}:-0.623228819024;SPI1:-0.641693685039;HMGA1,2:-0.656656483417;TEAD1:-0.65824162909;STAT2,4,6:-0.692984463097;bHLH_family:-0.696545115733;UFEwm:-0.700970263944;SPIB:-0.70436133097;TOPORS:-0.720955495925;HLF:-0.724588364253;HNF4A_NR2F1,2:-0.761673192304;NFKB1_REL_RELA:-0.778278198632;TBX4,5:-0.785811221686;SRF:-0.819039955329;DMAP1_NCOR{1,2}_SMARC:-0.846352875851;RXRA_VDR{dimer}:-0.8511316588;POU1F1:-0.861937836879;ETS1,2:-0.884281796178;TFAP4:-0.964106524377;TBP:-0.970841638744;TP53:-1.00695355772;ELF1,2,4:-1.2013294548;MYB:-1.23203987002;POU2F1..3:-1.23628898389;TEF:-1.24171973727;ESR1:-1.24211364206;RUNX1..3:-1.27075544692;E2F1..5:-1.31540358582;HOX{A5,B5}:-1.45774914231;NR6A1:-1.6051576633;ZNF238:-1.76140018488;ZNF148:-1.99002475277;FOXD3:-2.02200911887;EN1,2:-2.48078459305;HES1:-3.16738939215 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10179-103C8;search_select_hide=table117:FF:10179-103C8 | |||
}} | }} |
Latest revision as of 12:25, 3 June 2020
Name: | pineal gland - adult, donor10196 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13804 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13804
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13804
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0775 |
10 | 10 | 0.0327 |
100 | 100 | 0.18 |
101 | 101 | 0.926 |
102 | 102 | 0.92 |
103 | 103 | 0.0847 |
104 | 104 | 0.213 |
105 | 105 | 0.786 |
106 | 106 | 0.0197 |
107 | 107 | 0.0371 |
108 | 108 | 0.924 |
109 | 109 | 0.00657 |
11 | 11 | 0.024 |
110 | 110 | 0.0426 |
111 | 111 | 0.0194 |
112 | 112 | 0.969 |
113 | 113 | 0.565 |
114 | 114 | 0.344 |
115 | 115 | 0.696 |
116 | 116 | 0.39 |
117 | 117 | 0.00925 |
118 | 118 | 0.0153 |
119 | 119 | 0.175 |
12 | 12 | 0.981 |
120 | 120 | 0.104 |
121 | 121 | 0.346 |
122 | 122 | 0.793 |
123 | 123 | 0.217 |
124 | 124 | 0.703 |
125 | 125 | 0.544 |
126 | 126 | 0.287 |
127 | 127 | 0.949 |
128 | 128 | 0.194 |
129 | 129 | 0.347 |
13 | 13 | 0.00639 |
130 | 130 | 0.266 |
131 | 131 | 0.0417 |
132 | 132 | 0.581 |
133 | 133 | 0.0173 |
134 | 134 | 0.794 |
135 | 135 | 0.507 |
136 | 136 | 0.0143 |
137 | 137 | 0.948 |
138 | 138 | 0.499 |
139 | 139 | 0.618 |
14 | 14 | 0.985 |
140 | 140 | 0.544 |
141 | 141 | 0.569 |
142 | 142 | 0.567 |
143 | 143 | 0.29 |
144 | 144 | 0.512 |
145 | 145 | 0.0582 |
146 | 146 | 0.154 |
147 | 147 | 0.153 |
148 | 148 | 0.0936 |
149 | 149 | 0.204 |
15 | 15 | 0.0482 |
150 | 150 | 0.18 |
151 | 151 | 0.457 |
152 | 152 | 0.0314 |
153 | 153 | 0.665 |
154 | 154 | 0.864 |
155 | 155 | 0.633 |
156 | 156 | 0.979 |
157 | 157 | 0.441 |
158 | 158 | 0.0269 |
159 | 159 | 0.029 |
16 | 16 | 0.0939 |
160 | 160 | 0.0303 |
161 | 161 | 0.0742 |
162 | 162 | 0.716 |
163 | 163 | 0.794 |
164 | 164 | 0.00648 |
165 | 165 | 0.0329 |
166 | 166 | 0.966 |
167 | 167 | 0.356 |
168 | 168 | 0.222 |
169 | 169 | 0.0135 |
17 | 17 | 0.071 |
18 | 18 | 0.184 |
19 | 19 | 0.264 |
2 | 2 | 0.681 |
20 | 20 | 0.184 |
21 | 21 | 0.109 |
22 | 22 | 0.271 |
23 | 23 | 0.236 |
24 | 24 | 0.0383 |
25 | 25 | 0.459 |
26 | 26 | 1.22735e-4 |
27 | 27 | 0.83 |
28 | 28 | 0.801 |
29 | 29 | 0.00817 |
3 | 3 | 0.0406 |
30 | 30 | 0.677 |
31 | 31 | 0.918 |
32 | 32 | 0.0363 |
33 | 33 | 0.0625 |
34 | 34 | 0.742 |
35 | 35 | 0.955 |
36 | 36 | 0.126 |
37 | 37 | 0.0601 |
38 | 38 | 0.319 |
39 | 39 | 0.235 |
4 | 4 | 0.836 |
40 | 40 | 0.0304 |
41 | 41 | 0.251 |
42 | 42 | 0.294 |
43 | 43 | 0.121 |
44 | 44 | 0.114 |
45 | 45 | 0.765 |
46 | 46 | 0.0465 |
47 | 47 | 0.0638 |
48 | 48 | 0.0456 |
49 | 49 | 0.17 |
5 | 5 | 0.358 |
50 | 50 | 0.25 |
51 | 51 | 0.34 |
52 | 52 | 0.545 |
53 | 53 | 0.668 |
54 | 54 | 0.385 |
55 | 55 | 0.512 |
56 | 56 | 0.448 |
57 | 57 | 0.143 |
58 | 58 | 0.335 |
59 | 59 | 0.0747 |
6 | 6 | 0.553 |
60 | 60 | 0.112 |
61 | 61 | 0.0451 |
62 | 62 | 0.303 |
63 | 63 | 0.0487 |
64 | 64 | 0.301 |
65 | 65 | 0.168 |
66 | 66 | 0.179 |
67 | 67 | 0.356 |
68 | 68 | 0.332 |
69 | 69 | 0.192 |
7 | 7 | 0.166 |
70 | 70 | 0.00577 |
71 | 71 | 0.00428 |
72 | 72 | 0.518 |
73 | 73 | 0.0364 |
74 | 74 | 0.846 |
75 | 75 | 0.0285 |
76 | 76 | 0.227 |
77 | 77 | 0.157 |
78 | 78 | 0.0589 |
79 | 79 | 0.26 |
8 | 8 | 0.0137 |
80 | 80 | 0.871 |
81 | 81 | 0.24 |
82 | 82 | 0.867 |
83 | 83 | 0.229 |
84 | 84 | 0.335 |
85 | 85 | 0.305 |
86 | 86 | 0.466 |
87 | 87 | 3.04717e-4 |
88 | 88 | 0.959 |
89 | 89 | 0.367 |
9 | 9 | 0.793 |
90 | 90 | 0.0905 |
91 | 91 | 0.775 |
92 | 92 | 0.584 |
93 | 93 | 0.833 |
94 | 94 | 0.0553 |
95 | 95 | 0.0336 |
96 | 96 | 0.639 |
97 | 97 | 0.774 |
98 | 98 | 0.326 |
99 | 99 | 0.197 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13804
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001905 (pineal body)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0002757 (regional part of epithalamus)
0010134 (secretory circumventricular organ)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005408 (circumventricular organ)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
0001899 (epithalamus)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010160 (human pineal gland - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)