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{{f5samples
{{f5samples
|id=FF:10418-106C4
|DRA_sample_Accession=CAGE@SAMD00005781
|name=transitional-cell carcinoma cell line:5637, biol_rep1
|accession_numbers=CAGE;DRX008028;DRR008900;DRZ000325;DRZ001710;DRZ011675;DRZ013060
|sample_id=10418
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001255,UBERON:0002100,UBERON:0000483,UBERON:0004645,UBERON:0005910,UBERON:0000479,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0004923,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0002323,UBERON:0000489,UBERON:0003350,UBERON:0005177,UBERON:0000486,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0000365,UBERON:0001556,UBERON:0001008,UBERON:0001256,UBERON:0001259
|rna_tube_id=106C4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:1001319,CL:1000600
|rna_box=106
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
|rna_position=C4
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0102868,FF:0100792,FF:0102869,FF:0103137
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1191
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.47!296.47!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.09!193.50!FOXQ1;;chr1:201979743..201979762,+!p1@ELF3!1.93!83.19!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.86!79.29!IRF6;;chr6:20402102..20402152,+!p1@E2F3!1.67!179.09!E2F3;;chr2:176969228..176969260,+!p1@HOXD11!1.63!41.84!HOXD11;;chr8:10588010..10588030,-!p1@SOX7!1.63!41.76!SOX7;;chr3:12330560..12330579,+!p1@PPARG!1.62!46.81!PPARG;;chr11:34642656..34642667,+!p2@EHF!1.62!40.38!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.56!359.48!KLF5;;chr3:189507432..189507459,+!p1@TP63!1.55!34.68!TP63;;chr1:201979703..201979721,+!p2@ELF3!1.55!34.68!ELF3;;chr1:209979411..209979433,-!p2@IRF6!1.54!33.62!IRF6;;chr6:126240380..126240430,+!p2@NCOA7!1.51!78.72!NCOA7;;chr2:172967621..172967637,-!p1@DLX2!1.48!76.60!DLX2;;chr7:96654133..96654150,-!p1@DLX5!1.46!28.00!DLX5;;chr8:102504651..102504683,+!p1@GRHL2!1.45!27.35!GRHL2;;chr2:176969179..176969226,+!p2@HOXD11!1.45!27.03!HOXD11;;chr6:126240442..126240459,+!p4@NCOA7!1.39!29.87!NCOA7;;chr21:36421535..36421610,-!p2@RUNX1!1.37!78.96!RUNX1;;chr17:46703687..46703740,-!p1@HOXB9!1.37!22.22!HOXB9;;chr17:46682321..46682362,-!p1@HOXB6!1.35!21.49!HOXB6;;chr5:134369905..134369972,-!p1@PITX1!1.33!31.34!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!1.33!20.19!HOXA9;;chr3:111314186..111314204,-!p1@ZBED2!1.32!19.94!ZBED2;;chr6:126240356..126240379,+!p7@NCOA7!1.31!23.69!NCOA7;;chr3:181429704..181429722,+!p1@SOX2!1.31!19.62!SOX2;;chr6:20403916..20403965,+!p3@E2F3!1.30!82.87!E2F3;;chr7:27192185..27192209,-!p1@HOXA3!1.29!18.32!HOXA3;;chr6:21597765..21597779,+!p2@SOX4!1.27!138.96!SOX4;;chr3:169381420..169381535,-!p1@MECOM!1.26!20.27!MECOM;;chr7:27205106..27205134,-!p2@HOXA9!1.25!16.61!HOXA9;;chr6:126240463..126240489,+!p6@NCOA7!1.23!17.83!NCOA7;;chr11:129245526..129245553,+!p1@BARX2!1.23!15.96!BARX2;;chr5:134369879..134369898,-!p2@PITX1!1.22!15.63!PITX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.22!15.47!ONECUT2;;chr1:3569072..3569093,+!p1@TP73!1.20!14.90!TP73;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!14.25!ONECUT2;;chr7:27196267..27196311,-!p1@HOXA7!1.17!13.84!HOXA7;;chr14:38064429..38064486,-!p1@FOXA1!1.17!13.68!FOXA1;;chr6:21593973..21593988,+!p1@SOX4!1.16!472.06!SOX4;;chr12:66218255..66218304,+!p3@HMGA2!1.16!35.82!HMGA2;;chr7:27153454..27153469,-!p2@HOXA3!1.16!13.35!HOXA3;;chr17:46687959..46688007,-!p2@HOXB7!1.14!17.66!HOXB7;;chr2:176969097..176969109,+!p3@HOXD11!1.14!12.78!HOXD11;;chr7:64838786..64838809,+!p2@ZNF92!1.13!71.07!ZNF92;;chr20:55204351..55204377,+!p1@TFAP2C!1.12!15.63!TFAP2C;;chr17:80797886..80797906,-!p1@ZNF750!1.09!11.23!ZNF750;;chr11:31832658..31832681,-!p1@PAX6!1.07!10.66!PAX6;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.29!GATA3;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.42!KDM5D;;chr7:17338266..17338282,+!p1@AHR!1.03!105.91!AHR;;chr6:20403826..20403886,+!p2@E2F3!1.03!48.92!E2F3;;chr7:17338324..17338341,+!p3@AHR!1.02!32.07!AHR;;chr1:151032922..151032951,+!p2@MLLT11!1.01!15.63!MLLT11;;chr7:27224842..27224872,-!p1@HOXA11!1.00!9.04!HOXA11;;chr6:21597600..21597664,+!p3@SOX4!0.98!14.49!SOX4;;chr11:120107344..120107351,+!p1@POU2F3!0.98!10.34!POU2F3;;chr11:65667884..65667895,-!p2@FOSL1!0.97!33.46!FOSL1;;chr6:10412392..10412409,-!p4@TFAP2A!0.97!9.69!TFAP2A;;chr6:135502408..135502459,+!p2@MYB!0.97!9.69!MYB;;chr17:70117153..70117174,+!p1@SOX9!0.96!87.02!SOX9;;chr21:38071430..38071456,+!p1@SIM2!0.96!8.22!SIM2;;chr3:181429741..181429767,+!p2@SOX2!0.95!7.81!SOX2;;chr20:42295745..42295765,+!p1@MYBL2!0.94!131.55!MYBL2;;chr12:66218212..66218244,+!p5@HMGA2!0.94!11.48!HMGA2;;chr3:170076314..170076334,+!p2@SKIL!0.94!10.26!SKIL;;chr8:102504690..102504704,+!p3@GRHL2!0.94!7.73!GRHL2;;chr7:27196217..27196246,-!p2@HOXA7!0.94!7.65!HOXA7;;chr12:66218183..66218209,+!p4@HMGA2!0.93!14.82!HMGA2;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.88!ZNF385A;;chr19:12163769..12163798,-!p1@ZNF878!0.93!9.77!ZNF878;;chr1:37940170..37940190,+!p1@ZC3H12A!0.92!94.67!ZC3H12A;;chr17:46703212..46703238,-!p2@HOXB9!0.92!7.41!HOXB9;;chr17:7493405..7493419,-!p1@SOX15!0.92!7.24!SOX15;;chr2:176969124..176969155,+!p5@HOXD11!0.92!7.24!HOXD11;;chr5:174151553..174151610,+!p1@MSX2!0.91!12.05!MSX2;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.71!GATA3;;chr20:55205825..55205847,+!p2@TFAP2C!0.91!7.16!TFAP2C;;chr22:24093154..24093183,-!p2@ZNF70!0.91!7.08!ZNF70;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.54!HMGA2;;chr17:41277372..41277418,-!p1@BRCA1!0.90!26.46!BRCA1;;chr6:10412600..10412637,-!p1@TFAP2A!0.90!11.88!TFAP2A;;chr1:247171316..247171336,-!p3@ZNF695!0.90!10.58!ZNF695;;chr6:106546808..106546833,+!p3@PRDM1!0.89!8.63!PRDM1;;chr11:129245736..129245758,+!p2@BARX2!0.89!6.84!BARX2;;chr8:102504979..102505010,+!p2@GRHL2!0.89!6.76!GRHL2;;chr19:49864746..49864780,-!p2@TEAD2!0.88!9.28!TEAD2;;chr7:148581360..148581425,-!p1@EZH2!0.87!33.62!EZH2;;chr11:34645791..34645836,+!p3@EHF!0.87!6.35!EHF;;chr17:7492684..7492778,-!p2@SOX15!0.86!13.68!SOX15;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.19!IKZF3;;chr2:46524897..46524911,+!p2@EPAS1!0.85!17.8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|sample_dev_stage=68 year old adult
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
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Line 67: Line 40:
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|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.35582852865444e-263!GO:0043226;organelle;8.92558131803834e-217!GO:0043229;intracellular organelle;4.35576667702031e-216!GO:0043231;intracellular membrane-bound organelle;1.43468769403217e-205!GO:0043227;membrane-bound organelle;1.99202003296431e-205!GO:0005737;cytoplasm;3.02861885462594e-170!GO:0044422;organelle part;2.18685086546354e-154!GO:0044446;intracellular organelle part;8.52785513444136e-153!GO:0005634;nucleus;2.72312530024434e-107!GO:0044444;cytoplasmic part;1.10295365073624e-102!GO:0032991;macromolecular complex;6.75775330690799e-102!GO:0044237;cellular metabolic process;1.5506543421437e-99!GO:0044238;primary metabolic process;3.47231426053957e-98!GO:0043170;macromolecule metabolic process;4.46204656592404e-95!GO:0044428;nuclear part;5.95216992114643e-90!GO:0005515;protein binding;4.95481793400338e-86!GO:0030529;ribonucleoprotein complex;3.79779225784755e-82!GO:0003723;RNA binding;3.18784950349028e-76!GO:0043233;organelle lumen;7.78128807646657e-76!GO:0031974;membrane-enclosed lumen;7.78128807646657e-76!GO:0043283;biopolymer metabolic process;3.41236049272087e-64!GO:0016043;cellular component organization and biogenesis;1.86535548745221e-58!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.13194126712435e-57!GO:0010467;gene expression;4.86171432979975e-55!GO:0006396;RNA processing;1.97011558719746e-54!GO:0031981;nuclear lumen;2.25902006202014e-53!GO:0043234;protein complex;9.32680248710766e-53!GO:0005739;mitochondrion;1.15659428017296e-50!GO:0019538;protein metabolic process;1.47892914594005e-49!GO:0006412;translation;3.35870918895798e-48!GO:0043228;non-membrane-bound organelle;9.46761903171805e-47!GO:0043232;intracellular non-membrane-bound organelle;9.46761903171805e-47!GO:0005840;ribosome;2.34573818911266e-45!GO:0031090;organelle membrane;1.13552426624356e-44!GO:0033036;macromolecule localization;1.63107744671144e-44!GO:0044267;cellular protein metabolic process;1.76161481673988e-44!GO:0016071;mRNA metabolic process;2.33954501901316e-44!GO:0044260;cellular macromolecule metabolic process;9.90571077755793e-44!GO:0015031;protein transport;2.01767701286133e-43!GO:0006996;organelle organization and biogenesis;2.03863112526773e-42!GO:0006259;DNA metabolic process;1.92278448773704e-41!GO:0008380;RNA splicing;3.82569715221467e-40!GO:0008104;protein localization;1.04804528665887e-39!GO:0045184;establishment of protein localization;3.25668460695092e-39!GO:0046907;intracellular transport;3.31647908129989e-39!GO:0003735;structural constituent of ribosome;9.84853060409925e-39!GO:0006397;mRNA processing;2.39844730929846e-38!GO:0007049;cell cycle;7.13765638051762e-38!GO:0031967;organelle envelope;2.43756994548724e-37!GO:0031975;envelope;6.20926891360483e-37!GO:0065003;macromolecular complex assembly;1.37777178660564e-36!GO:0044249;cellular biosynthetic process;8.21018888848173e-36!GO:0003676;nucleic acid binding;1.14481233680925e-35!GO:0009058;biosynthetic process;7.32329488816532e-35!GO:0005654;nucleoplasm;1.70421593271562e-34!GO:0044429;mitochondrial part;6.61625069775017e-34!GO:0005829;cytosol;1.07786666503639e-33!GO:0009059;macromolecule biosynthetic process;3.4707397648221e-33!GO:0033279;ribosomal subunit;5.92864689313464e-33!GO:0022607;cellular component assembly;2.59541433922363e-32!GO:0006886;intracellular protein transport;5.5240642113134e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11365423880577e-31!GO:0000166;nucleotide binding;1.46741298790454e-30!GO:0016070;RNA metabolic process;9.34232286044134e-30!GO:0005681;spliceosome;2.00602347954495e-28!GO:0044451;nucleoplasm part;7.91758496575902e-28!GO:0022402;cell cycle process;7.23780007834373e-27!GO:0051649;establishment of cellular localization;2.02396298380961e-26!GO:0000278;mitotic cell cycle;2.29760828866927e-26!GO:0051641;cellular localization;4.53904936035742e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.29843966814688e-24!GO:0006974;response to DNA damage stimulus;5.6477975582124e-24!GO:0016462;pyrophosphatase activity;1.15621991476619e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.96231087332721e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.44281895450705e-22!GO:0017111;nucleoside-triphosphatase activity;2.54154077964327e-22!GO:0005740;mitochondrial envelope;3.76938139275115e-22!GO:0005694;chromosome;4.30752307515126e-22!GO:0019866;organelle inner membrane;1.16954548632634e-21!GO:0032553;ribonucleotide binding;2.16858143775669e-21!GO:0032555;purine ribonucleotide binding;2.16858143775669e-21!GO:0006281;DNA repair;2.43491778688861e-21!GO:0012505;endomembrane system;3.69266581172541e-21!GO:0017076;purine nucleotide binding;1.11780042808323e-20!GO:0031966;mitochondrial membrane;1.30697297315036e-20!GO:0022403;cell cycle phase;1.38736089132736e-20!GO:0000087;M phase of mitotic cell cycle;3.48001505934768e-20!GO:0044445;cytosolic part;8.70375913823338e-20!GO:0007067;mitosis;9.22228534595563e-20!GO:0051301;cell division;1.40321411565783e-19!GO:0005743;mitochondrial inner membrane;1.41185064241264e-19!GO:0016874;ligase activity;2.27755346651237e-19!GO:0022618;protein-RNA complex assembly;2.44913244691434e-19!GO:0051276;chromosome organization and biogenesis;3.73505223248961e-19!GO:0005730;nucleolus;4.05296345235068e-19!GO:0006119;oxidative phosphorylation;4.31669839675889e-19!GO:0006260;DNA replication;4.32698558354257e-19!GO:0044427;chromosomal part;1.21925752593645e-18!GO:0015935;small ribosomal subunit;2.8047341861882e-18!GO:0008134;transcription factor binding;1.25269704471164e-17!GO:0006605;protein targeting;1.52542217338848e-17!GO:0006457;protein folding;2.30587164590601e-17!GO:0005524;ATP binding;2.47416744084552e-17!GO:0006366;transcription from RNA polymerase II promoter;3.3696692029892e-17!GO:0043285;biopolymer catabolic process;4.02148347049645e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.96599335615734e-17!GO:0009719;response to endogenous stimulus;6.52833252984075e-17!GO:0019941;modification-dependent protein catabolic process;7.03147368508168e-17!GO:0043632;modification-dependent macromolecule catabolic process;7.03147368508168e-17!GO:0032559;adenyl ribonucleotide binding;7.39436509122053e-17!GO:0006512;ubiquitin cycle;1.02699881991556e-16!GO:0000279;M phase;1.02990913374034e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.31715413596801e-16!GO:0044257;cellular protein catabolic process;1.93431974829998e-16!GO:0044265;cellular macromolecule catabolic process;2.87741517423761e-16!GO:0005783;endoplasmic reticulum;2.97912486686939e-16!GO:0005635;nuclear envelope;4.18616038850605e-16!GO:0030554;adenyl nucleotide binding;4.31390452422173e-16!GO:0044455;mitochondrial membrane part;4.92753065602191e-16!GO:0030163;protein catabolic process;7.13326187155014e-16!GO:0015934;large ribosomal subunit;7.30371958565484e-16!GO:0048770;pigment granule;9.00834564413232e-16!GO:0042470;melanosome;9.00834564413232e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.24422814047012e-15!GO:0050794;regulation of cellular process;1.28090431074865e-15!GO:0008135;translation factor activity, nucleic acid binding;1.40101307392955e-15!GO:0031965;nuclear membrane;1.60153071229707e-15!GO:0043412;biopolymer modification;1.9473818404019e-15!GO:0044453;nuclear membrane part;3.08777814191635e-15!GO:0031980;mitochondrial lumen;7.85740407969661e-15!GO:0005759;mitochondrial matrix;7.85740407969661e-15!GO:0009057;macromolecule catabolic process;8.15662650958637e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;8.16849385463998e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;8.89704095410128e-15!GO:0000375;RNA splicing, via transesterification reactions;8.89704095410128e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.89704095410128e-15!GO:0044432;endoplasmic reticulum part;2.01842454283374e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.86167826500394e-14!GO:0006913;nucleocytoplasmic transport;3.43192527273445e-14!GO:0048193;Golgi vesicle transport;3.45902359632154e-14!GO:0006323;DNA packaging;3.64538228174248e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.0251562181276e-13!GO:0005746;mitochondrial respiratory chain;1.34235144384691e-13!GO:0051169;nuclear transport;1.40512810597963e-13!GO:0051726;regulation of cell cycle;1.4683216618399e-13!GO:0006464;protein modification process;1.54900515137072e-13!GO:0042254;ribosome biogenesis and assembly;2.01159526597589e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.77977850338238e-13!GO:0003954;NADH dehydrogenase activity;2.77977850338238e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.77977850338238e-13!GO:0005643;nuclear pore;2.84374405326736e-13!GO:0004386;helicase activity;2.93804259978924e-13!GO:0000074;regulation of progression through cell cycle;3.00997695671391e-13!GO:0050657;nucleic acid transport;4.30691109410912e-13!GO:0051236;establishment of RNA localization;4.30691109410912e-13!GO:0050658;RNA transport;4.30691109410912e-13!GO:0005761;mitochondrial ribosome;4.50882054424832e-13!GO:0000313;organellar ribosome;4.50882054424832e-13!GO:0043687;post-translational protein modification;4.89315462810224e-13!GO:0006403;RNA localization;5.48140527761384e-13!GO:0016604;nuclear body;8.16575859363771e-13!GO:0051082;unfolded protein binding;8.21243771810695e-13!GO:0012501;programmed cell death;8.75670495667716e-13!GO:0006915;apoptosis;1.80084637488466e-12!GO:0005794;Golgi apparatus;1.92070374228172e-12!GO:0003743;translation initiation factor activity;2.37764519166158e-12!GO:0016887;ATPase activity;2.42050076820731e-12!GO:0016192;vesicle-mediated transport;2.491857085805e-12!GO:0044248;cellular catabolic process;5.85383918899816e-12!GO:0006413;translational initiation;7.90534871476629e-12!GO:0006461;protein complex assembly;1.00908127014278e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.53331154597213e-11!GO:0042623;ATPase activity, coupled;1.85429177824699e-11!GO:0042775;organelle ATP synthesis coupled electron transport;2.61571213475839e-11!GO:0042773;ATP synthesis coupled electron transport;2.61571213475839e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.33947777362444e-11!GO:0045271;respiratory chain complex I;3.33947777362444e-11!GO:0005747;mitochondrial respiratory chain complex I;3.33947777362444e-11!GO:0005789;endoplasmic reticulum membrane;3.94823014952586e-11!GO:0048523;negative regulation of cellular process;4.86019222401285e-11!GO:0051186;cofactor metabolic process;4.89574657303495e-11!GO:0015630;microtubule cytoskeleton;5.37624923631111e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.48260168827522e-11!GO:0008219;cell death;5.77524560984395e-11!GO:0016265;death;5.77524560984395e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.49799827852567e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.96757081955557e-11!GO:0050789;regulation of biological process;6.99841599574467e-11!GO:0051028;mRNA transport;7.71932287574418e-11!GO:0006446;regulation of translational initiation;1.25381514804715e-10!GO:0003712;transcription cofactor activity;1.33293174571279e-10!GO:0008026;ATP-dependent helicase activity;1.38743220479309e-10!GO:0019222;regulation of metabolic process;1.6908514879689e-10!GO:0016607;nuclear speck;1.79872243911553e-10!GO:0008565;protein transporter activity;2.20218040733415e-10!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.41896478825112e-10!GO:0046930;pore complex;3.03478916613347e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.12433026512845e-10!GO:0000785;chromatin;3.60129834670145e-10!GO:0065002;intracellular protein transport across a membrane;4.45620958035211e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.15615857392116e-10!GO:0017038;protein import;6.57125102401972e-10!GO:0006399;tRNA metabolic process;8.03850104075864e-10!GO:0016568;chromatin modification;8.26628653136567e-10!GO:0009055;electron carrier activity;9.86131286277603e-10!GO:0008639;small protein conjugating enzyme activity;1.03727271163645e-09!GO:0065004;protein-DNA complex assembly;1.34722716506553e-09!GO:0006732;coenzyme metabolic process;1.42978497213039e-09!GO:0031324;negative regulation of cellular metabolic process;1.81054476712618e-09!GO:0004842;ubiquitin-protein ligase activity;2.42695794031259e-09!GO:0051246;regulation of protein metabolic process;2.48971366228942e-09!GO:0006261;DNA-dependent DNA replication;3.50181939658795e-09!GO:0006333;chromatin assembly or disassembly;3.67195866750003e-09!GO:0005819;spindle;3.68391266127366e-09!GO:0019787;small conjugating protein ligase activity;5.18888054772342e-09!GO:0048519;negative regulation of biological process;5.3298839026925e-09!GO:0006364;rRNA processing;6.72687500508976e-09!GO:0005667;transcription factor complex;7.42410148549843e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.65830263440786e-09!GO:0016072;rRNA metabolic process;1.0289114281094e-08!GO:0009892;negative regulation of metabolic process;1.0386196121074e-08!GO:0043067;regulation of programmed cell death;1.32120443509486e-08!GO:0042981;regulation of apoptosis;1.467529649822e-08!GO:0009259;ribonucleotide metabolic process;1.467529649822e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.66891374208028e-08!GO:0043623;cellular protein complex assembly;2.14347123870763e-08!GO:0005793;ER-Golgi intermediate compartment;2.49381505342298e-08!GO:0006163;purine nucleotide metabolic process;3.21351649400619e-08!GO:0000775;chromosome, pericentric region;3.56999039514356e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.15405596679261e-08!GO:0016881;acid-amino acid ligase activity;4.25417011032339e-08!GO:0009060;aerobic respiration;4.373642598196e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.84976692614156e-08!GO:0003924;GTPase activity;5.08925582227151e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.40500603734969e-08!GO:0043566;structure-specific DNA binding;7.76319701464911e-08!GO:0006793;phosphorus metabolic process;1.1097155904899e-07!GO:0006796;phosphate metabolic process;1.1097155904899e-07!GO:0051170;nuclear import;1.38997638509684e-07!GO:0045333;cellular respiration;1.401245245607e-07!GO:0009150;purine ribonucleotide metabolic process;1.40934917737268e-07!GO:0031323;regulation of cellular metabolic process;1.42265379889864e-07!GO:0005813;centrosome;1.42438707376042e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.42438707376042e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.77285798456878e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.77285798456878e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.77285798456878e-07!GO:0032446;protein modification by small protein conjugation;1.79807709142995e-07!GO:0051329;interphase of mitotic cell cycle;1.9338808686226e-07!GO:0016564;transcription repressor activity;2.02174780184645e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.24394829093627e-07!GO:0009056;catabolic process;2.24709409332528e-07!GO:0048475;coated membrane;2.49123306972217e-07!GO:0030117;membrane coat;2.49123306972217e-07!GO:0007010;cytoskeleton organization and biogenesis;2.91923112280942e-07!GO:0007051;spindle organization and biogenesis;2.91923112280942e-07!GO:0006606;protein import into nucleus;3.01182212366172e-07!GO:0051325;interphase;3.07332787711222e-07!GO:0015986;ATP synthesis coupled proton transport;3.1852420178543e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.1852420178543e-07!GO:0007005;mitochondrion organization and biogenesis;3.27820880455342e-07!GO:0006164;purine nucleotide biosynthetic process;3.28032276645878e-07!GO:0043038;amino acid activation;3.35506595989117e-07!GO:0006418;tRNA aminoacylation for protein translation;3.35506595989117e-07!GO:0043039;tRNA aminoacylation;3.35506595989117e-07!GO:0009260;ribonucleotide biosynthetic process;3.49809528934382e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.53642968932473e-07!GO:0016567;protein ubiquitination;3.63527117822684e-07!GO:0000245;spliceosome assembly;3.65484018768947e-07!GO:0009141;nucleoside triphosphate metabolic process;3.81638332926084e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.82431339813263e-07!GO:0005815;microtubule organizing center;4.25934986322968e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.98177261100766e-07!GO:0030120;vesicle coat;5.18830231341065e-07!GO:0030662;coated vesicle membrane;5.18830231341065e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.22012683353116e-07!GO:0005525;GTP binding;5.67581602055587e-07!GO:0003682;chromatin binding;6.21665233395418e-07!GO:0016563;transcription activator activity;6.36682530369949e-07!GO:0016481;negative regulation of transcription;6.37099851121169e-07!GO:0045893;positive regulation of transcription, DNA-dependent;7.37403676761069e-07!GO:0048522;positive regulation of cellular process;7.49708905861572e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.76746436563068e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.76746436563068e-07!GO:0016779;nucleotidyltransferase activity;7.7754447232169e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.8843996854493e-07!GO:0016740;transferase activity;9.26219429105614e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.26219429105614e-07!GO:0003697;single-stranded DNA binding;9.28119500069359e-07!GO:0005657;replication fork;1.01398918667524e-06!GO:0046034;ATP metabolic process;1.09343093053423e-06!GO:0006099;tricarboxylic acid cycle;1.24181932719562e-06!GO:0046356;acetyl-CoA catabolic process;1.24181932719562e-06!GO:0043069;negative regulation of programmed cell death;1.31019869634768e-06!GO:0051188;cofactor biosynthetic process;1.32597859129174e-06!GO:0016310;phosphorylation;1.36226508423481e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.41215865172422e-06!GO:0006350;transcription;1.42170371116436e-06!GO:0016787;hydrolase activity;1.45339168193328e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.77202695633701e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.77202695633701e-06!GO:0000075;cell cycle checkpoint;1.89965365431029e-06!GO:0019829;cation-transporting ATPase activity;1.90056425017213e-06!GO:0005768;endosome;2.06614041650528e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.36741275129361e-06!GO:0009117;nucleotide metabolic process;2.9081641766608e-06!GO:0004298;threonine endopeptidase activity;3.14927717043114e-06!GO:0006916;anti-apoptosis;3.50163511827206e-06!GO:0043066;negative regulation of apoptosis;3.54369936601541e-06!GO:0016363;nuclear matrix;3.63187142214872e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.68024446506013e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.68024446506013e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.70505060314742e-06!GO:0019899;enzyme binding;4.3161165743193e-06!GO:0006754;ATP biosynthetic process;4.35683204633544e-06!GO:0006753;nucleoside phosphate metabolic process;4.35683204633544e-06!GO:0051052;regulation of DNA metabolic process;4.61665780432945e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.87296725243652e-06!GO:0044431;Golgi apparatus part;5.07816285883959e-06!GO:0010468;regulation of gene expression;5.30764951401294e-06!GO:0009108;coenzyme biosynthetic process;5.54543465486141e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.09216775926698e-06!GO:0065007;biological regulation;6.38440576007854e-06!GO:0006084;acetyl-CoA metabolic process;6.49040866060974e-06!GO:0006613;cotranslational protein targeting to membrane;7.45381792307887e-06!GO:0006302;double-strand break repair;7.75881838505688e-06!GO:0045941;positive regulation of transcription;7.80101643854738e-06!GO:0005798;Golgi-associated vesicle;8.30966588610958e-06!GO:0032561;guanyl ribonucleotide binding;8.4930866090533e-06!GO:0019001;guanyl nucleotide binding;8.4930866090533e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.67221502998267e-06!GO:0051168;nuclear export;1.05944927482332e-05!GO:0045259;proton-transporting ATP synthase complex;1.13276050964156e-05!GO:0051427;hormone receptor binding;1.39372158548259e-05!GO:0009109;coenzyme catabolic process;1.66376554901576e-05!GO:0008094;DNA-dependent ATPase activity;1.71328373444793e-05!GO:0006334;nucleosome assembly;1.7234251149938e-05!GO:0003724;RNA helicase activity;2.02686240410815e-05!GO:0045786;negative regulation of progression through cell cycle;2.15800035576853e-05!GO:0006950;response to stress;2.35754558651258e-05!GO:0031497;chromatin assembly;2.46227602242602e-05!GO:0003713;transcription coactivator activity;2.76961568587985e-05!GO:0003690;double-stranded DNA binding;2.86270272259759e-05!GO:0007243;protein kinase cascade;2.97271204456787e-05!GO:0035257;nuclear hormone receptor binding;3.08374981047729e-05!GO:0007088;regulation of mitosis;3.31248963219849e-05!GO:0006752;group transfer coenzyme metabolic process;3.54333554742881e-05!GO:0032774;RNA biosynthetic process;3.60949222892587e-05!GO:0006351;transcription, DNA-dependent;4.53666561178636e-05!GO:0051187;cofactor catabolic process;4.64337716829218e-05!GO:0003714;transcription corepressor activity;4.76971407337189e-05!GO:0031988;membrane-bound vesicle;5.06474664167993e-05!GO:0000776;kinetochore;5.34682393547492e-05!GO:0030036;actin cytoskeleton organization and biogenesis;5.79523245764486e-05!GO:0044440;endosomal part;5.9985547386328e-05!GO:0010008;endosome membrane;5.9985547386328e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.41312968920818e-05!GO:0007017;microtubule-based process;6.90583830919739e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.93215167201153e-05!GO:0031252;leading edge;7.00779812121143e-05!GO:0007059;chromosome segregation;7.08067366715612e-05!GO:0005762;mitochondrial large ribosomal subunit;7.28576747695948e-05!GO:0000315;organellar large ribosomal subunit;7.28576747695948e-05!GO:0003729;mRNA binding;7.91937757329475e-05!GO:0043021;ribonucleoprotein binding;7.92441537458113e-05!GO:0016859;cis-trans isomerase activity;7.9260800646748e-05!GO:0003899;DNA-directed RNA polymerase activity;9.9646958407016e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000105356782953623!GO:0005874;microtubule;0.000111921496436139!GO:0006612;protein targeting to membrane;0.000120203345174149!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000121560839659733!GO:0007264;small GTPase mediated signal transduction;0.000130014151586673!GO:0000151;ubiquitin ligase complex;0.000130329192593551!GO:0048518;positive regulation of biological process;0.000145236350085408!GO:0005769;early endosome;0.000147136590618604!GO:0006352;transcription initiation;0.000147877607271151!GO:0042802;identical protein binding;0.000152965813528045!GO:0006402;mRNA catabolic process;0.00018602362265323!GO:0007093;mitotic cell cycle checkpoint;0.000206055355364499!GO:0008654;phospholipid biosynthetic process;0.000211585280215002!GO:0000059;protein import into nucleus, docking;0.000212987766321129!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000215994136224088!GO:0005788;endoplasmic reticulum lumen;0.000233488878286441!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000249683399999956!GO:0000139;Golgi membrane;0.000287515619119958!GO:0008186;RNA-dependent ATPase activity;0.000310479193862441!GO:0016853;isomerase activity;0.000334288477289021!GO:0006310;DNA recombination;0.000356637720217775!GO:0008250;oligosaccharyl transferase complex;0.000378156599303837!GO:0003678;DNA helicase activity;0.00039108107669822!GO:0031982;vesicle;0.000406294973313972!GO:0007052;mitotic spindle organization and biogenesis;0.000412269371467444!GO:0045449;regulation of transcription;0.00041479907207088!GO:0045892;negative regulation of transcription, DNA-dependent;0.000443579965015989!GO:0051789;response to protein stimulus;0.000450841729942953!GO:0006986;response to unfolded protein;0.000450841729942953!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000461850002552288!GO:0030867;rough endoplasmic reticulum membrane;0.000516286641911213!GO:0030029;actin filament-based process;0.0005240508889415!GO:0003702;RNA polymerase II transcription factor activity;0.000535573075286932!GO:0005770;late endosome;0.000548119475481845!GO:0006383;transcription from RNA polymerase III promoter;0.000550965267895807!GO:0065009;regulation of a molecular function;0.000558775059112961!GO:0005885;Arp2/3 protein complex;0.000585658170542667!GO:0005048;signal sequence binding;0.000612406112180494!GO:0031410;cytoplasmic vesicle;0.000637490400277534!GO:0004576;oligosaccharyl transferase activity;0.000679847989064136!GO:0000314;organellar small ribosomal subunit;0.000701667228359083!GO:0005763;mitochondrial small ribosomal subunit;0.000701667228359083!GO:0005876;spindle microtubule;0.000710798336579803!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000735863783210692!GO:0048471;perinuclear region of cytoplasm;0.000747163139655215!GO:0045454;cell redox homeostasis;0.000750146221876549!GO:0006401;RNA catabolic process;0.000768699955931196!GO:0003684;damaged DNA binding;0.000771024743690092!GO:0000082;G1/S transition of mitotic cell cycle;0.000802024993630898!GO:0009967;positive regulation of signal transduction;0.000828093216264804!GO:0006405;RNA export from nucleus;0.00083395536594518!GO:0004004;ATP-dependent RNA helicase activity;0.00087818690941058!GO:0008092;cytoskeletal protein binding;0.00087818690941058!GO:0004674;protein serine/threonine kinase activity;0.000878222712441353!GO:0008033;tRNA processing;0.000911582902065216!GO:0032508;DNA duplex unwinding;0.000918820755572745!GO:0032392;DNA geometric change;0.000918820755572745!GO:0033116;ER-Golgi intermediate compartment membrane;0.000918820755572745!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000948892480138273!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00096615912983605!GO:0006626;protein targeting to mitochondrion;0.000971653493999002!GO:0051252;regulation of RNA metabolic process;0.00100659740667872!GO:0030521;androgen receptor signaling pathway;0.00100663341529477!GO:0016251;general RNA polymerase II transcription factor activity;0.00104113596091704!GO:0019843;rRNA binding;0.00104113596091704!GO:0030118;clathrin coat;0.0010594118202164!GO:0006275;regulation of DNA replication;0.00111099577139104!GO:0009893;positive regulation of metabolic process;0.00129942476231556!GO:0030176;integral to endoplasmic reticulum membrane;0.00130322479027577!GO:0006417;regulation of translation;0.00131775134346983!GO:0006891;intra-Golgi vesicle-mediated transport;0.00137746292898867!GO:0048500;signal recognition particle;0.00140015017023985!GO:0051920;peroxiredoxin activity;0.00142591823779132!GO:0043681;protein import into mitochondrion;0.00144254784042873!GO:0016044;membrane organization and biogenesis;0.0014640808042862!GO:0006268;DNA unwinding during replication;0.00156879064623181!GO:0005856;cytoskeleton;0.00165086552836728!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00168599063689817!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00169553353554685!GO:0006839;mitochondrial transport;0.00175938825330531!GO:0044452;nucleolar part;0.001770923079109!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00177596390313926!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00177596390313926!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00177596390313926!GO:0015980;energy derivation by oxidation of organic compounds;0.00180648827736632!GO:0030133;transport vesicle;0.00184785042587835!GO:0005684;U2-dependent spliceosome;0.00185765604094041!GO:0005905;coated pit;0.00190576634092269!GO:0009116;nucleoside metabolic process;0.00200165451151658!GO:0006355;regulation of transcription, DNA-dependent;0.00206717466946566!GO:0006338;chromatin remodeling;0.00222215858043971!GO:0008139;nuclear localization sequence binding;0.00232105075141721!GO:0008312;7S RNA binding;0.00246404897991492!GO:0006984;ER-nuclear signaling pathway;0.00250729246713775!GO:0016197;endosome transport;0.00250729246713775!GO:0018196;peptidyl-asparagine modification;0.00258051427784079!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00258051427784079!GO:0009889;regulation of biosynthetic process;0.00268147884361529!GO:0030658;transport vesicle membrane;0.0027713711209111!GO:0031124;mRNA 3'-end processing;0.00278064992958852!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0029276354154035!GO:0030880;RNA polymerase complex;0.00308065833567241!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0030914677268672!GO:0009165;nucleotide biosynthetic process;0.00326870293811481!GO:0045045;secretory pathway;0.0033090451971372!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00338087902395581!GO:0000228;nuclear chromosome;0.00339176829079499!GO:0000792;heterochromatin;0.00341506627005172!GO:0005637;nuclear inner membrane;0.00344337494790506!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00363744055169214!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00370762135162986!GO:0045047;protein targeting to ER;0.00370762135162986!GO:0030119;AP-type membrane coat adaptor complex;0.00370762135162986!GO:0051338;regulation of transferase activity;0.00375364934394413!GO:0030132;clathrin coat of coated pit;0.00377251725696491!GO:0043596;nuclear replication fork;0.00382447467702274!GO:0006892;post-Golgi vesicle-mediated transport;0.00388796833004925!GO:0042393;histone binding;0.00398495743744791!GO:0051087;chaperone binding;0.00398495743744791!GO:0003677;DNA binding;0.00417269272346856!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00429524566873343!GO:0006414;translational elongation;0.00434279330971654!GO:0015631;tubulin binding;0.0043901908843492!GO:0030131;clathrin adaptor complex;0.00445854439156237!GO:0046489;phosphoinositide biosynthetic process;0.00447444874482243!GO:0031326;regulation of cellular biosynthetic process;0.00451144345513484!GO:0043624;cellular protein complex disassembly;0.00451838733037711!GO:0009112;nucleobase metabolic process;0.00461130083564358!GO:0035258;steroid hormone receptor binding;0.00464587233516509!GO:0048468;cell development;0.00478191968439453!GO:0051101;regulation of DNA binding;0.00478191968439453!GO:0004527;exonuclease activity;0.00482136502204131!GO:0000922;spindle pole;0.0048956126581382!GO:0031968;organelle outer membrane;0.0049387559717007!GO:0006611;protein export from nucleus;0.00499147043967573!GO:0043488;regulation of mRNA stability;0.00514168618475325!GO:0043487;regulation of RNA stability;0.00514168618475325!GO:0046474;glycerophospholipid biosynthetic process;0.00548947706488634!GO:0006270;DNA replication initiation;0.00604759440706873!GO:0030134;ER to Golgi transport vesicle;0.00610615400892476!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00618337662032111!GO:0000428;DNA-directed RNA polymerase complex;0.00618337662032111!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00646536212400657!GO:0019867;outer membrane;0.0064781462474268!GO:0030663;COPI coated vesicle membrane;0.00652289789017703!GO:0030126;COPI vesicle coat;0.00652289789017703!GO:0042770;DNA damage response, signal transduction;0.00658206711747421!GO:0031072;heat shock protein binding;0.00667530752129625!GO:0030660;Golgi-associated vesicle membrane;0.00679724509771784!GO:0043549;regulation of kinase activity;0.00691450889489991!GO:0032984;macromolecular complex disassembly;0.00709151857743508!GO:0031325;positive regulation of cellular metabolic process;0.00716872103464345!GO:0005773;vacuole;0.0073184307590156!GO:0016584;nucleosome positioning;0.00734350756658771!GO:0008168;methyltransferase activity;0.00775103216658074!GO:0032200;telomere organization and biogenesis;0.00790078309098852!GO:0000723;telomere maintenance;0.00790078309098852!GO:0001558;regulation of cell growth;0.00791054801463761!GO:0043022;ribosome binding;0.00819052762161241!GO:0016741;transferase activity, transferring one-carbon groups;0.00824497035492362!GO:0006378;mRNA polyadenylation;0.00834903399014117!GO:0043241;protein complex disassembly;0.0083851979439458!GO:0030127;COPII vesicle coat;0.0083851979439458!GO:0012507;ER to Golgi transport vesicle membrane;0.0083851979439458!GO:0043065;positive regulation of apoptosis;0.00857036888629973!GO:0030137;COPI-coated vesicle;0.00857167377148331!GO:0008629;induction of apoptosis by intracellular signals;0.00857167377148331!GO:0040029;regulation of gene expression, epigenetic;0.00864339162570207!GO:0031123;RNA 3'-end processing;0.00873150906187418!GO:0051098;regulation of binding;0.00874489466402304!GO:0030433;ER-associated protein catabolic process;0.00893467162071526!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00893467162071526!GO:0003711;transcription elongation regulator activity;0.00893467162071526!GO:0000725;recombinational repair;0.00893467162071526!GO:0000724;double-strand break repair via homologous recombination;0.00893467162071526!GO:0046966;thyroid hormone receptor binding;0.00925900928990604!GO:0007265;Ras protein signal transduction;0.00929147013059139!GO:0006284;base-excision repair;0.00966105650419677!GO:0006818;hydrogen transport;0.00993148622684425!GO:0005791;rough endoplasmic reticulum;0.00993380212968844!GO:0006376;mRNA splice site selection;0.00993380212968844!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00993380212968844!GO:0000910;cytokinesis;0.0100780019847683!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0101230129602259!GO:0007006;mitochondrial membrane organization and biogenesis;0.0101385926533712!GO:0000323;lytic vacuole;0.0101653485977658!GO:0005764;lysosome;0.0101653485977658!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0102215517489951!GO:0015992;proton transport;0.0104166622290959!GO:0030518;steroid hormone receptor signaling pathway;0.0104205297937136!GO:0004518;nuclease activity;0.0104205297937136!GO:0008632;apoptotic program;0.0106290416992255!GO:0001726;ruffle;0.0106912871320382!GO:0005832;chaperonin-containing T-complex;0.0108595218624069!GO:0016272;prefoldin complex;0.011131578363314!GO:0043068;positive regulation of programmed cell death;0.0112050048283341!GO:0006091;generation of precursor metabolites and energy;0.0115651803217322!GO:0006607;NLS-bearing substrate import into nucleus;0.0116219799975336!GO:0033673;negative regulation of kinase activity;0.0116808286699242!GO:0006469;negative regulation of protein kinase activity;0.0116808286699242!GO:0046467;membrane lipid biosynthetic process;0.0117054665413757!GO:0016126;sterol biosynthetic process;0.0117923698203131!GO:0019887;protein kinase regulator activity;0.011799623005347!GO:0030031;cell projection biogenesis;0.0120132605982251!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0121686515398776!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0121686515398776!GO:0005741;mitochondrial outer membrane;0.0121686515398776!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0123423792251925!GO:0008180;signalosome;0.013051119720355!GO:0005938;cell cortex;0.013237282467483!GO:0006144;purine base metabolic process;0.013237282467483!GO:0008361;regulation of cell size;0.013237282467483!GO:0000049;tRNA binding;0.0135684632640335!GO:0051540;metal cluster binding;0.0137920816286986!GO:0051536;iron-sulfur cluster binding;0.0137920816286986!GO:0051656;establishment of organelle localization;0.0138285343348979!GO:0006595;polyamine metabolic process;0.0138285343348979!GO:0048146;positive regulation of fibroblast proliferation;0.0139650229054381!GO:0051053;negative regulation of DNA metabolic process;0.0139650229054381!GO:0051287;NAD binding;0.0139921807326332!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0141616907576168!GO:0050681;androgen receptor binding;0.0141616907576168!GO:0000339;RNA cap binding;0.0143926764390039!GO:0050790;regulation of catalytic activity;0.0144573949626305!GO:0000786;nucleosome;0.0144573949626305!GO:0016491;oxidoreductase activity;0.014620515834534!GO:0008283;cell proliferation;0.014695962831942!GO:0045859;regulation of protein kinase activity;0.0149599579094555!GO:0000118;histone deacetylase complex;0.015162062209128!GO:0005083;small GTPase regulator activity;0.015230272685192!GO:0008243;plasminogen activator activity;0.0155459945294756!GO:0006695;cholesterol biosynthetic process;0.0156189035235207!GO:0005669;transcription factor TFIID complex;0.0159091760651049!GO:0019207;kinase regulator activity;0.0160270700346561!GO:0008022;protein C-terminus binding;0.0164951601213951!GO:0031570;DNA integrity checkpoint;0.0164951601213951!GO:0048144;fibroblast proliferation;0.0164951601213951!GO:0048145;regulation of fibroblast proliferation;0.0164951601213951!GO:0003746;translation elongation factor activity;0.0166228862244748!GO:0043256;laminin complex;0.0167390524301948!GO:0030125;clathrin vesicle coat;0.0167897342225147!GO:0030665;clathrin coated vesicle membrane;0.0167897342225147!GO:0051348;negative regulation of transferase activity;0.0170187638981644!GO:0048487;beta-tubulin binding;0.0170219087943501!GO:0030027;lamellipodium;0.0172021310613325!GO:0008538;proteasome activator activity;0.0175814238308158!GO:0008637;apoptotic mitochondrial changes;0.0179461243710577!GO:0000819;sister chromatid segregation;0.0180999457863428!GO:0016049;cell growth;0.0185560379031454!GO:0006289;nucleotide-excision repair;0.0192009370562159!GO:0022415;viral reproductive process;0.0193801654960026!GO:0043433;negative regulation of transcription factor activity;0.0194787728502052!GO:0031901;early endosome membrane;0.019486267681923!GO:0006541;glutamine metabolic process;0.0196038469654965!GO:0050662;coenzyme binding;0.0196552408293319!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0205359607094932!GO:0016301;kinase activity;0.0211872677773582!GO:0043601;nuclear replisome;0.0213916399518213!GO:0030894;replisome;0.0213916399518213!GO:0007050;cell cycle arrest;0.0214366810961048!GO:0051128;regulation of cellular component organization and biogenesis;0.0214755950065915!GO:0046983;protein dimerization activity;0.0216872848194248!GO:0004003;ATP-dependent DNA helicase activity;0.0217863061534408!GO:0017166;vinculin binding;0.0219329707574274!GO:0044454;nuclear chromosome part;0.0220923750217044!GO:0007242;intracellular signaling cascade;0.0221837902135298!GO:0035267;NuA4 histone acetyltransferase complex;0.0221844031326082!GO:0043189;H4/H2A histone acetyltransferase complex;0.0224507431365234!GO:0000070;mitotic sister chromatid segregation;0.0224515522793341!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0227103496912009!GO:0015399;primary active transmembrane transporter activity;0.0227103496912009!GO:0030968;unfolded protein response;0.0227446389203974!GO:0000086;G2/M transition of mitotic cell cycle;0.0232140483234871!GO:0030032;lamellipodium biogenesis;0.0233507809262167!GO:0030659;cytoplasmic vesicle membrane;0.0233507809262167!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.024759290264085!GO:0045792;negative regulation of cell size;0.0249263472772905!GO:0051539;4 iron, 4 sulfur cluster binding;0.0251032352913738!GO:0016791;phosphoric monoester hydrolase activity;0.0251283067476268!GO:0030384;phosphoinositide metabolic process;0.0253340652402256!GO:0016569;covalent chromatin modification;0.0257563904167378!GO:0032259;methylation;0.0259968776706756!GO:0005869;dynactin complex;0.0261727053866295!GO:0000726;non-recombinational repair;0.0264018804016748!GO:0006650;glycerophospholipid metabolic process;0.0273864436259831!GO:0008097;5S rRNA binding;0.0277079363163097!GO:0008047;enzyme activator activity;0.0280701144235199!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0280966891990537!GO:0004860;protein kinase inhibitor activity;0.028292367604332!GO:0046822;regulation of nucleocytoplasmic transport;0.0287812596397826!GO:0031625;ubiquitin protein ligase binding;0.0297547208733363!GO:0007162;negative regulation of cell adhesion;0.0297547208733363!GO:0004448;isocitrate dehydrogenase activity;0.0302729259100703!GO:0043414;biopolymer methylation;0.0303791918105986!GO:0001701;in utero embryonic development;0.0303791918105986!GO:0031529;ruffle organization and biogenesis;0.0303872216181224!GO:0045936;negative regulation of phosphate metabolic process;0.0304257493684817!GO:0000209;protein polyubiquitination;0.0307369688818435!GO:0043631;RNA polyadenylation;0.0308462396520818!GO:0006497;protein amino acid lipidation;0.0309184709939977!GO:0044450;microtubule organizing center part;0.0314098035956683!GO:0030308;negative regulation of cell growth;0.0318152659348154!GO:0006406;mRNA export from nucleus;0.0318152659348154!GO:0008276;protein methyltransferase activity;0.0321360179039807!GO:0007034;vacuolar transport;0.0321360179039807!GO:0042026;protein refolding;0.0322640589054092!GO:0032906;transforming growth factor-beta2 production;0.0325723194097217!GO:0032909;regulation of transforming growth factor-beta2 production;0.0325723194097217!GO:0008652;amino acid biosynthetic process;0.0326012389693767!GO:0051059;NF-kappaB binding;0.0326012389693767!GO:0017056;structural constituent of nuclear pore;0.0326021762428307!GO:0016311;dephosphorylation;0.0326572521667266!GO:0006506;GPI anchor biosynthetic process;0.0329478997782201!GO:0005784;translocon complex;0.0329478997782201!GO:0030155;regulation of cell adhesion;0.0331286323782933!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0338297036075772!GO:0008408;3'-5' exonuclease activity;0.0339366004234182!GO:0000018;regulation of DNA recombination;0.0340217762425377!GO:0007346;regulation of progression through mitotic cell cycle;0.0340585853006901!GO:0007004;telomere maintenance via telomerase;0.0341416057849223!GO:0005652;nuclear lamina;0.0344670274415363!GO:0044433;cytoplasmic vesicle part;0.0347304827754183!GO:0008234;cysteine-type peptidase activity;0.0351838450617077!GO:0022890;inorganic cation transmembrane transporter activity;0.0351838450617077!GO:0012506;vesicle membrane;0.035633062609334!GO:0000178;exosome (RNase complex);0.0366076038732707!GO:0007021;tubulin folding;0.0370284314323378!GO:0009119;ribonucleoside metabolic process;0.0374020018336558!GO:0005092;GDP-dissociation inhibitor activity;0.0376185032214644!GO:0008426;protein kinase C inhibitor activity;0.0379349917362155!GO:0030100;regulation of endocytosis;0.0383024330709994!GO:0016408;C-acyltransferase activity;0.0391346980799142!GO:0006505;GPI anchor metabolic process;0.039326973628144!GO:0006672;ceramide metabolic process;0.0394557322203103!GO:0005875;microtubule associated complex;0.0395555175635499!GO:0030833;regulation of actin filament polymerization;0.0397509602285199!GO:0009966;regulation of signal transduction;0.0403611992911773!GO:0030522;intracellular receptor-mediated signaling pathway;0.0404811900401245!GO:0007266;Rho protein signal transduction;0.0409570134478923!GO:0008536;Ran GTPase binding;0.040986807241224!GO:0046426;negative regulation of JAK-STAT cascade;0.0411574926686307!GO:0030140;trans-Golgi network transport vesicle;0.0413982418746346!GO:0046483;heterocycle metabolic process;0.0415846835719084!GO:0000790;nuclear chromatin;0.0421019542415744!GO:0031577;spindle checkpoint;0.0425658326752358!GO:0035035;histone acetyltransferase binding;0.0431679027985594!GO:0003923;GPI-anchor transamidase activity;0.0431679027985594!GO:0016255;attachment of GPI anchor to protein;0.0431679027985594!GO:0042765;GPI-anchor transamidase complex;0.0431679027985594!GO:0000152;nuclear ubiquitin ligase complex;0.0436569981863603!GO:0000123;histone acetyltransferase complex;0.0437983241150775!GO:0005663;DNA replication factor C complex;0.0441222642375559!GO:0008017;microtubule binding;0.044140309409058!GO:0017134;fibroblast growth factor binding;0.0442174603030946!GO:0009303;rRNA transcription;0.0444195315196701!GO:0008610;lipid biosynthetic process;0.0444442020836226!GO:0006301;postreplication repair;0.0446974660979251!GO:0004721;phosphoprotein phosphatase activity;0.0447768309740799!GO:0047485;protein N-terminus binding;0.0448639580484022!GO:0008537;proteasome activator complex;0.0466215697949027!GO:0000781;chromosome, telomeric region;0.0466765570945923!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0466765570945923!GO:0031902;late endosome membrane;0.0469028948838188!GO:0030496;midbody;0.0469028948838188!GO:0001832;blastocyst growth;0.0470109811108023!GO:0008143;poly(A) binding;0.0480150651350421!GO:0042585;germinal vesicle;0.0484958116122808!GO:0022411;cellular component disassembly;0.0486091396403293!GO:0001824;blastocyst development;0.0492472519285969!GO:0007569;cell aging;0.0493024701649625
|sample_id=10418
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bladder
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10418-106C4;search_select_hide=table117:FF:10418-106C4
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:transitional-cell carcinoma cell line:5637
Species:Human (Homo sapiens)
Library ID:CNhs10735
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebladder
dev stage68 year old adult
sexmale
age68
cell typeunclassifiable
cell line5637
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005781
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10735 CAGE DRX008028 DRR008900
Accession ID Hg19

Library idBAMCTSS
CNhs10735 DRZ000325 DRZ001710
Accession ID Hg38

Library idBAMCTSS
CNhs10735 DRZ011675 DRZ013060
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0715
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.581
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0.034
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.034
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.173
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0673
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0577
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.14
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.034
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.253
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.594
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.034
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.361
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.034
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.034
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.00316
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.505
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.034
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.034
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10735

Jaspar motifP-value
MA0002.27.93003e-4
MA0003.10.134
MA0004.10.949
MA0006.10.902
MA0007.10.272
MA0009.10.503
MA0014.10.431
MA0017.10.136
MA0018.20.14
MA0019.10.904
MA0024.11.64207e-6
MA0025.10.262
MA0027.10.507
MA0028.10.0176
MA0029.10.839
MA0030.10.204
MA0031.10.939
MA0035.20.959
MA0038.15.2855e-4
MA0039.20.39
MA0040.10.74
MA0041.10.655
MA0042.10.307
MA0043.10.0186
MA0046.10.987
MA0047.20.469
MA0048.10.573
MA0050.10.792
MA0051.10.415
MA0052.10.605
MA0055.10.0257
MA0057.10.952
MA0058.10.912
MA0059.10.505
MA0060.11.92872e-10
MA0061.10.478
MA0062.20.0104
MA0065.20.0763
MA0066.10.0317
MA0067.10.461
MA0068.10.774
MA0069.10.563
MA0070.10.199
MA0071.10.196
MA0072.10.651
MA0073.10.918
MA0074.10.5
MA0076.10.0083
MA0077.10.0376
MA0078.10.86
MA0079.20.845
MA0080.20.0214
MA0081.10.195
MA0083.10.137
MA0084.10.351
MA0087.10.329
MA0088.10.299
MA0090.10.149
MA0091.10.00212
MA0092.10.276
MA0093.10.964
MA0099.20.106
MA0100.10.583
MA0101.10.27
MA0102.20.517
MA0103.10.0467
MA0104.20.924
MA0105.10.00146
MA0106.10.302
MA0107.10.324
MA0108.20.00165
MA0111.10.653
MA0112.21.66475e-4
MA0113.10.0338
MA0114.10.51
MA0115.10.854
MA0116.15.66215e-4
MA0117.10.437
MA0119.10.21
MA0122.10.693
MA0124.10.683
MA0125.10.00765
MA0131.10.306
MA0135.10.694
MA0136.10.812
MA0137.20.912
MA0138.20.0105
MA0139.10.345
MA0140.10.457
MA0141.10.0159
MA0142.10.362
MA0143.10.967
MA0144.10.468
MA0145.10.193
MA0146.10.0473
MA0147.10.901
MA0148.10.957
MA0149.10.94
MA0150.10.138
MA0152.10.525
MA0153.10.861
MA0154.10.0153
MA0155.10.0988
MA0156.10.307
MA0157.10.5
MA0159.10.304
MA0160.10.342
MA0162.10.472
MA0163.14.3509e-7
MA0164.10.655
MA0258.10.0012
MA0259.10.833



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10735

Novel motifP-value
10.0423
100.312
1000.801
1010.255
1020.969
1030.136
1040.895
1050.419
1060.0492
1070.363
1080.698
1090.3
110.0206
1100.407
1110.704
1120.0196
1130.699
1140.0197
1150.652
1160.225
1170.243
1180.216
1190.054
120.878
1200.59
1210.498
1220.819
1230.184
1240.0803
1250.824
1260.561
1270.449
1280.0107
1290.79
130.977
1300.445
1310.146
1320.922
1330.0168
1340.27
1350.0205
1360.279
1370.0719
1380.141
1390.0019
140.963
1400.659
1410.299
1420.486
1430.00634
1440.0341
1450.195
1460.747
1470.67
1480.216
1490.00546
150.165
1500.87
1510.452
1520.162
1530.576
1540.774
1550.651
1560.911
1570.769
1580.83
1590.332
160.271
1600.253
1610.755
1620.571
1630.568
1640.124
1650.961
1660.403
1670.644
1680.966
1690.0113
170.166
180.0687
190.0458
20.69
200.403
210.374
220.091
230.103
240.812
250.631
260.337
270.184
280.852
290.319
30.034
300.908
310.228
320.00121
330.752
340.418
350.0695
360.574
370.0609
380.417
390.848
40.576
400.845
410.201
420.252
430.0655
440.0472
450.82
460.0458
470.176
480.217
490.124
50.164
500.77
510.266
520.711
530.423
540.178
550.562
560.658
570.512
580.297
590.0235
60.508
600.211
610.602
620.048
630.427
640.258
650.103
660.272
670.375
680.0283
690.283
70.661
700.0146
710.172
720.191
730.0794
740.251
750.113
760.943
770.22
781
792.55589e-4
80.0344
800.29
810.0553
826.17331e-4
830.514
840.771
850.00139
860.167
870.915
880.614
890.0515
90.325
900.305
910.589
920.0621
930.874
940.00405
950.584
960.00717
970.535
980.0823
990.972



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10735


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
1001319 (bladder cell)
1000600 (lower urinary tract cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001255 (urinary bladder)
0002100 (trunk)
0000483 (epithelium)
0004645 (urinary bladder urothelium)
0005910 (transitional epithelium)
0000479 (tissue)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0002323 (body cavity)
0000489 (cavitated compound organ)
0003350 (epithelium of mucosa)
0005177 (trunk region element)
0000486 (multilaminar epithelium)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001556 (lower urinary tract)
0001008 (renal system)
0001256 (wall of urinary bladder)
0001259 (mucosa of urinary bladder)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102868 (bladder transitional cell carcinoma cell line sample)
0100792 (urinary bladder cancer cell line sample)
0102869 (transitional cell carcinoma cell line sample)
0103137 (5637 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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