FF:10452-106G2: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	cord blood derived cell line:COBL-a 24h infection(-C)
Species:	Human (Homo sapiens)
Library ID:	CNhs11049
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	COBL-a
company	NA
collaboration	Chieko Kai (University of Tokyo)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005051

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11049		CAGE		DRX007864		DRR008736

Accession ID Hg19

Library id		BAM		CTSS
CNhs11049		DRZ000161		DRZ001546

Accession ID Hg38

Library id		BAM		CTSS
CNhs11049		DRZ011511		DRZ012896

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.162
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.541
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0394
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.109
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.113
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.202
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.113
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.286
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.251
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.113
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.113
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0.113
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0.925
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.113
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.092
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.202
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.82
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0367
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.113
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.202
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.113
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.358
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.264
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.113
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0234
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11049

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0343
MA0003.1	MA0003.1	0.24
MA0004.1	MA0004.1	0.688
MA0006.1	MA0006.1	0.197
MA0007.1	MA0007.1	0.253
MA0009.1	MA0009.1	0.973
MA0014.1	MA0014.1	0.574
MA0017.1	MA0017.1	0.258
MA0018.2	MA0018.2	2.25756e-11
MA0019.1	MA0019.1	0.799
MA0024.1	MA0024.1	7.78444e-4
MA0025.1	MA0025.1	0.396
MA0027.1	MA0027.1	0.484
MA0028.1	MA0028.1	3.73469e-5
MA0029.1	MA0029.1	0.0555
MA0030.1	MA0030.1	0.269
MA0031.1	MA0031.1	0.441
MA0035.2	MA0035.2	0.00627
MA0038.1	MA0038.1	0.00236
MA0039.2	MA0039.2	0.444
MA0040.1	MA0040.1	0.0429
MA0041.1	MA0041.1	0.267
MA0042.1	MA0042.1	0.243
MA0043.1	MA0043.1	2.04815e-5
MA0046.1	MA0046.1	0.087
MA0047.2	MA0047.2	0.533
MA0048.1	MA0048.1	0.125
MA0050.1	MA0050.1	0.00928
MA0051.1	MA0051.1	0.0115
MA0052.1	MA0052.1	0.534
MA0055.1	MA0055.1	0.0393
MA0057.1	MA0057.1	0.185
MA0058.1	MA0058.1	0.569
MA0059.1	MA0059.1	0.638
MA0060.1	MA0060.1	6.58777e-19
MA0061.1	MA0061.1	3.57085e-12
MA0062.2	MA0062.2	3.98272e-7
MA0065.2	MA0065.2	0.471
MA0066.1	MA0066.1	0.0221
MA0067.1	MA0067.1	0.0395
MA0068.1	MA0068.1	0.0164
MA0069.1	MA0069.1	0.96
MA0070.1	MA0070.1	0.568
MA0071.1	MA0071.1	0.711
MA0072.1	MA0072.1	0.016
MA0073.1	MA0073.1	0.682
MA0074.1	MA0074.1	0.514
MA0076.1	MA0076.1	7.44874e-6
MA0077.1	MA0077.1	0.735
MA0078.1	MA0078.1	0.269
MA0079.2	MA0079.2	0.369
MA0080.2	MA0080.2	0.324
MA0081.1	MA0081.1	0.934
MA0083.1	MA0083.1	0.0281
MA0084.1	MA0084.1	0.936
MA0087.1	MA0087.1	0.278
MA0088.1	MA0088.1	0.418
MA0090.1	MA0090.1	9.96853e-4
MA0091.1	MA0091.1	0.0403
MA0092.1	MA0092.1	0.0971
MA0093.1	MA0093.1	0.584
MA0099.2	MA0099.2	0.462
MA0100.1	MA0100.1	0.269
MA0101.1	MA0101.1	1.97125e-14
MA0102.2	MA0102.2	0.364
MA0103.1	MA0103.1	0.0422
MA0104.2	MA0104.2	0.0559
MA0105.1	MA0105.1	1.11777e-4
MA0106.1	MA0106.1	0.0746
MA0107.1	MA0107.1	8.53403e-18
MA0108.2	MA0108.2	0.787
MA0111.1	MA0111.1	0.814
MA0112.2	MA0112.2	0.00506
MA0113.1	MA0113.1	0.0502
MA0114.1	MA0114.1	0.824
MA0115.1	MA0115.1	0.856
MA0116.1	MA0116.1	0.607
MA0117.1	MA0117.1	0.009
MA0119.1	MA0119.1	0.193
MA0122.1	MA0122.1	0.413
MA0124.1	MA0124.1	0.537
MA0125.1	MA0125.1	0.464
MA0131.1	MA0131.1	0.042
MA0135.1	MA0135.1	0.00373
MA0136.1	MA0136.1	0.552
MA0137.2	MA0137.2	0.0208
MA0138.2	MA0138.2	0.0199
MA0139.1	MA0139.1	0.752
MA0140.1	MA0140.1	4.6195e-4
MA0141.1	MA0141.1	0.423
MA0142.1	MA0142.1	0.337
MA0143.1	MA0143.1	0.0123
MA0144.1	MA0144.1	0.905
MA0145.1	MA0145.1	0.054
MA0146.1	MA0146.1	0.206
MA0147.1	MA0147.1	0.0648
MA0148.1	MA0148.1	0.427
MA0149.1	MA0149.1	0.617
MA0150.1	MA0150.1	0.795
MA0152.1	MA0152.1	0.309
MA0153.1	MA0153.1	0.00214
MA0154.1	MA0154.1	0.354
MA0155.1	MA0155.1	0.0842
MA0156.1	MA0156.1	0.0799
MA0157.1	MA0157.1	0.159
MA0159.1	MA0159.1	0.846
MA0160.1	MA0160.1	0.227
MA0162.1	MA0162.1	0.0378
MA0163.1	MA0163.1	0.762
MA0164.1	MA0164.1	0.43
MA0258.1	MA0258.1	0.0538
MA0259.1	MA0259.1	0.2

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11049

Novel motif	Logo	P-value
1	1	0.805
10	10	0.135
100	100	0.249
101	101	0.252
102	102	0.965
103	103	0.381
104	104	0.822
105	105	0.919
106	106	0.0533
107	107	0.027
108	108	0.54
109	109	0.363
11	11	0.315
110	110	0.281
111	111	0.968
112	112	0.096
113	113	0.95
114	114	0.179
115	115	0.156
116	116	0.705
117	117	0.443
118	118	0.778
119	119	0.451
12	12	0.579
120	120	0.431
121	121	0.733
122	122	0.502
123	123	0.239
124	124	0.704
125	125	0.995
126	126	0.649
127	127	0.215
128	128	0.0161
129	129	0.377
13	13	0.147
130	130	0.216
131	131	0.593
132	132	0.199
133	133	0.917
134	134	0.555
135	135	0.377
136	136	0.587
137	137	0.82
138	138	0.0845
139	139	0.453
14	14	0.726
140	140	0.503
141	141	0.529
142	142	0.932
143	143	0.438
144	144	0.984
145	145	0.404
146	146	0.291
147	147	0.204
148	148	0.436
149	149	0.00548
15	15	0.673
150	150	0.49
151	151	0.17
152	152	0.0584
153	153	0.586
154	154	0.979
155	155	0.631
156	156	0.808
157	157	0.767
158	158	0.548
159	159	0.703
16	16	0.173
160	160	0.0715
161	161	0.998
162	162	0.22
163	163	0.749
164	164	0.173
165	165	0.855
166	166	0.658
167	167	0.209
168	168	0.411
169	169	0.0197
17	17	0.254
18	18	0.605
19	19	0.0406
2	2	0.0244
20	20	0.0561
21	21	0.624
22	22	0.0851
23	23	0.109
24	24	0.742
25	25	0.725
26	26	0.814
27	27	0.0545
28	28	0.455
29	29	0.689
3	3	0.431
30	30	0.0531
31	31	0.343
32	32	0.01
33	33	0.8
34	34	0.146
35	35	0.844
36	36	0.0849
37	37	0.768
38	38	0.506
39	39	0.431
4	4	0.0115
40	40	0.761
41	41	0.447
42	42	0.749
43	43	0.78
44	44	0.143
45	45	0.235
46	46	0.385
47	47	0.592
48	48	0.447
49	49	0.683
5	5	0.479
50	50	0.715
51	51	0.403
52	52	0.256
53	53	0.925
54	54	0.281
55	55	0.0265
56	56	0.531
57	57	0.674
58	58	0.933
59	59	0.0721
6	6	0.972
60	60	0.373
61	61	0.955
62	62	0.734
63	63	0.282
64	64	0.743
65	65	0.213
66	66	8.05369e-7
67	67	0.416
68	68	0.342
69	69	0.168
7	7	0.81
70	70	0.267
71	71	0.923
72	72	0.381
73	73	0.124
74	74	0.464
75	75	0.888
76	76	0.343
77	77	0.00207
78	78	0.578
79	79	0.0471
8	8	0.169
80	80	0.318
81	81	0.442
82	82	0.13
83	83	0.771
84	84	0.42
85	85	0.0423
86	86	0.57
87	87	0.804
88	88	0.795
89	89	0.00312
9	9	0.228
90	90	0.771
91	91	0.125
92	92	0.217
93	93	0.842
94	94	0.345
95	95	0.84
96	96	0.905
97	97	0.453
98	98	0.108
99	99	0.00918

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11049

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000081 blood cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000625 experimental infection sample
FF:0104053 umbilical cord blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000081 (blood cell)
0000255 (eukaryotic cell)
0000080 (circulating cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000178 (blood)
0002331 (umbilical cord)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0101035 (hematopoietic cell line sample)
0104053 (umbilical cord blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0000926,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000478,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0000358,UBERON:0002390,UBERON:0004535,UBERON:0000307,UBERON:0002193,UBERON:0003081,UBERON:0001009,UBERON:0000091,UBERON:0000087,UBERON:0006603,UBERON:0007806,UBERON:0003061,UBERON:0008780,UBERON:0005728
+|DRA_sample_Accession=CAGE@SAMD00005051
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000988,CL:0000548,CL:0000012,CL:0002371,CL:0000081,CL:0000004,CL:0000255,CL:0000080
+|accession_numbers=CAGE;DRX007864;DRR008736;DRZ000161;DRZ001546;DRZ011511;DRZ012896
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000081,CL:0000255,CL:0000080
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0101035,FF:0104053
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.69!485.11!IRF4;;chr3:189349162..189349207,+!p2@TP63!2.43!268.35!TP63;;chr10:64576105..64576133,-!p1@EGR2!2.20!312.53!EGR2;;chr8:11561684..11561751,+!p1@GATA4!2.15!140.25!GATA4;;chr11:129245736..129245758,+!p2@BARX2!2.13!135.21!BARX2;;chr2:231090471..231090504,+!p2@SP140!2.10!126.32!SP140;;chr13:28494130..28494168,+!p1@PDX1!2.09!122.17!PDX1;;chr14:75988831..75988847,+!p2@BATF!2.09!120.68!BATF;;chr12:103351444..103351461,+!p1@ASCL1!2.07!117.42!ASCL1;;chr17:38020392..38020477,-!p1@IKZF3!2.05!112.08!IKZF3;;chr3:101546827..101546847,+!p2@NFKBIZ!2.04!151.52!NFKBIZ;;chr19:36204309..36204335,+!p1@ZBTB32!1.96!89.25!ZBTB32;;chr9:77112244..77112262,+!p1@RORB!1.95!98.15!RORB;;chr14:75988771..75988826,+!p1@BATF!1.93!110.60!BATF;;chr18:55102598..55102623,+!p1@ONECUT2!1.93!83.92!ONECUT2;;chr17:46703687..46703740,-!p1@HOXB9!1.91!80.95!HOXB9;;chr17:45810594..45810608,+!p1@TBX21!1.90!77.69!TBX21;;chr1:212873084..212873137,-!p2@BATF3!1.85!69.68!BATF3;;chr6:135502408..135502459,+!p2@MYB!1.84!78.28!MYB;;chr12:48276548..48276564,-!p3@VDR!1.84!67.90!VDR;;chr6:91006518..91006570,-!p1@BACH2!1.80!137.59!BACH2;;chr6:135502501..135502546,+!p1@MYB!1.77!68.79!MYB;;chr6:137815524..137815537,-!p1@OLIG3!1.77!57.82!OLIG3;;chr2:61108878..61108891,+!p5@REL!1.77!57.53!REL;;chr10:64576035..64576046,-!p2@EGR2!1.76!56.64!EGR2;;chr15:60884706..60884743,-!p1@RORA!1.75!274.28!RORA;;chr11:31832658..31832681,-!p1@PAX6!1.74!53.37!PAX6;;chr2:157189180..157189290,-!p1@NR4A2!1.73!259.16!NR4A2;;chr12:52445218..52445237,+!p1@NR4A1!1.72!617.06!NR4A1;;chr2:61108808..61108821,+!p3@REL!1.68!59.01!REL;;chr11:129245526..129245553,+!p1@BARX2!1.68!46.85!BARX2;;chr1:212873162..212873188,-!p3@BATF3!1.68!46.85!BATF3;;chr3:111314186..111314204,-!p1@ZBED2!1.67!46.26!ZBED2;;chr2:231090433..231090469,+!p1@SP140!1.64!42.70!SP140;;chr3:141087339..141087387,+!p2@ZBTB38!1.60!382.22!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!1.58!141.14!ZBTB38;;chr2:73520667..73520683,-!p1@EGR4!1.56!34.99!EGR4;;chr2:176969228..176969260,+!p1@HOXD11!1.54!33.80!HOXD11;;chr19:19976683..19976709,+!p1@ZNF253!1.53!139.07!ZNF253;;chr10:104155659..104155676,+!p4@NFKB2!1.53!40.92!NFKB2;;chr1:212782094..212782109,+!p1@ATF3!1.51!805.94!ATF3;;chr2:185463247..185463263,+!p1@ZNF804A!1.51!54.86!ZNF804A;;chr12:103352277..103352324,+!p2@ASCL1!1.51!31.13!ASCL1;;chr20:50159198..50159299,-!p1@NFATC2!1.50!44.48!NFATC2;;chr19:12203100..12203132,+!p1@ZNF788!1.49!59.90!ZNF788;;chr8:22550982..22550999,-!p1@EGR3!1.48!80.36!EGR3;;chr18:55102628..55102646,+!p2@ONECUT2!1.48!29.36!ONECUT2;;chr17:46703436..46703460,-!p7@HOXB9!1.46!28.17!HOXB9;;chr1:212873061..212873080,-!p4@BATF3!1.46!27.87!BATF3;;chr2:61108695..61108753,+!p1@REL!1.45!181.47!REL;;chr6:106546808..106546833,+!p3@PRDM1!1.45!34.40!PRDM1;;chr17:40440359..40440386,+!p4@STAT5A!1.43!26.09!STAT5A;;chr1:25291475..25291511,-!p2@RUNX3!1.43!25.80!RUNX3;;chr4:26322267..26322334,+!p3@RBPJ!1.41!59.01!RBPJ;;chr17:40441354..40441410,+!p2@STAT5A!1.40!24.31!STAT5A;;chr4:144435112..144435176,+!p3@SMARCA5!1.39!47.44!SMARCA5;;chr2:61108771..61108789,+!p4@REL!1.39!35.29!REL;;chr4:57522513..57522548,-!p4@HOPX!1.39!23.43!HOPX;;chr1:3569072..3569093,+!p1@TP73!1.39!23.43!TP73;;chr20:51588873..51588953,+!p1@TSHZ2!1.37!29.36!TSHZ2;;chr13:28494109..28494122,+!p2@PDX1!1.37!22.54!PDX1;;chr3:181429704..181429722,+!p1@SOX2!1.37!22.24!SOX2;;chr12:19593515..19593573,+!p9@AEBP2!1.36!29.65!AEBP2;;chr1:27023752..27023799,+!p4@ARID1A!1.35!27.87!ARID1A;;chr19:19976714..19976729,+!p3@ZNF253!1.34!38.84!ZNF253;;chr1:212873267..212873332,-!p1@BATF3!1.34!28.17!BATF3;;chr3:181429741..181429767,+!p2@SOX2!1.34!20.76!SOX2;;chr6:126102292..126102329,+!p3@NCOA7!1.33!65.83!NCOA7;;chr19:12444440..12444455,-!p1@ZNF563!1.33!35.29!ZNF563;;chr17:8027418..8027432,-!p1@HES7!1.33!20.46!HES7;;chr16:31885093..31885165,+!p1@ZNF267!1.31!290.29!ZNF267;;chr19:45252008..45252024,+!p2@BCL3!1.31!63.46!BCL3;;chr1:6684918..6684936,+!p2@THAP3!1.31!23.43!THAP3;;chr17:40440446..40440464,+!p5@STAT5A!1.31!19.57!STAT5A;;chr2:45168875..45168916,+!p1@SIX3!1.31!19.57!SIX3;;chr3:141087562..141087594,+!p12@ZBTB38!1.31!19.57!ZBTB38;;chrY:2803415..2803468,+!p1@ZFY!1.31!19.57!ZFY;;chr4:57522476..57522500,-!p7@HOPX!1.29!18.38!HOPX;;chr2:145274981..145274994,-!p9@ZEB2!1.28!26.39!ZEB2;;chr2:192015701..192015743,-!p1@STAT4!1.28!24.91!STAT4;;chr10:8096772..8096787,+!p2@GATA3!1.28!21.05!GATA3;;chr20:6748325..6748352,+!p1@BMP2!1.27!25.50!BMP2;;chr7:50344289..50344323,+!p1@IKZF1!1.27!17.79!IKZF1;;chr6:135502472..135502489,+!p3@MYB!1.27!17.49!MYB;;chr13:28494180..28494196,+!p3@PDX1!1.27!17.49!PDX1;;chr6:144385698..144385742,-!p2@PLAGL1!1.25!20.16!PLAGL1;;chr1:212873200..212873230,-!p5@BATF3!1.25!16.90!BATF3;;chr14:35873947..35873965,-!p1@NFKBIA!1.24!999.87!NFKBIA;;chr10:104155480..104155534,+!p2@NFKB2!1.23!101.41!NFKB2;;chr1:214161272..214161322,+!p1@PROX1!1.23!22.54!PROX1;;chr4:26324474..26324501,+!p16@RBPJ!1.23!16.01!RBPJ;;chr6:36355360..36355392,-!p4@ETV7!1.22!15.72!ETV7;;chr2:145274900..145274934,-!p4@ZEB2!1.21!91.03!ZEB2;;chr6:126240442..126240459,+!p4@NCOA7!1.21!19.57!NCOA7;;chr21:47063625..47063658,+!p1@PCBP3!1.20!63.75!PCBP3;;chr10:8096631..8096660,+!p1@GATA3!1.20!17.79!GATA3;;chr17:46703528..46703549,-!p5@HOXB9!1.20!14.83!HOXB9;;chr2:145274998..145275012,-!p13@ZEB2!1.19!16.31!ZEB2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.18!728.26!NFKBIZ;;chr10:104154246..104154347,+!p3@NFKB2!1.18!85.40!NFKB2;;chr19:21203481..21203504,+!p2@ZNF430!1.18!32.91!ZNF430;;chr3:189348969..189349018,+!p4@TP63!1.18!14.23!TP63;;chr18:77155922..77155939,+!p1@NFATC1!1.17!37.95!NFATC1;;chr2:176969179..176969226,+!p2@HOXD11!1.17!13.94!HOXD11;;chr11:31832610..31832639,-!p5@PAX6!1.17!13.94!PAX6;;chr12:54393880..54393962,+!p1@HOXC9!1.16!13.34!HOXC9;;chr3:141747950..141748004,-!p7@TFDP2!1.16!13.34!TFDP2;;chr1:158978768..158978800,+!p8@IFI16!1.16!13.34!IFI16;;chr19:57791876..57791892,+!p5@ZNF460!1.15!20.76!ZNF460;;chr11:34645791..34645836,+!p3@EHF!1.15!13.05!EHF;;chr4:26323870..26323885,+!p13@RBPJ!1.15!13.05!RBPJ;;chr3:141747459..141747475,-!p1@TFDP2!1.14!106.15!TFDP2;;chr6:91006296..91006308,-!p7@BACH2!1.14!12.75!BACH2;;chr11:31832581..31832601,-!p7@PAX6!1.14!12.75!PAX6;;chr6:126240380..126240430,+!p2@NCOA7!1.13!32.62!NCOA7;;chr6:50786591..50786614,+!p1@TFAP2B!1.13!12.45!TFAP2B;;chr3:157824202..157824211,-!p3@SHOX2!1.13!12.45!SHOX2;;chr3:189349132..189349142,+!p7@TP63!1.13!12.45!TP63;;chr10:104155680..104155687,+!p6@NFKB2!1.13!12.45!NFKB2;;chr1:25256756..25256774,-!p1@RUNX3!1.12!23.13!RUNX3;;chr1:92949331..92949377,-!p2@GFI1!1.12!12.16!GFI1;;chr19:57791328..57791377,+!p2@ZNF460!1.11!142.92!ZNF460;;chr10:8095593..8095625,+!p3@GATA3!1.11!13.94!GATA3;;chr14:75988851..75988862,+!p3@BATF!1.11!11.86!BATF;;chr6:106546834..106546850,+!p4@PRDM1!1.11!11.86!PRDM1;;chr14:75745523..75745537,+!p1@FOS!1.10!1380.01!FOS;;chr12:56415246..56415286,+!p2@IKZF4!1.10!11.56!IKZF4;;chr2:231090344..231090361,-!p3@SP110!1.10!11.56!SP110;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.17!EBF1;;chr11:61520075..61520136,+!p1@C11orf9!1.09!24.31!C11orf9;;chr8:116681123..116681143,-!p4@TRPS1!1.09!22.24!TRPS1;;chr6:1610293..1610310,+!p1@FOXC1!1.09!18.98!FOXC1;;chr12:24715376..24715432,-!p1@SOX5!1.09!14.53!SOX5;;chr20:20348740..20348757,+!p1@INSM1!1.09!11.27!INSM1;;chr1:92951607..92951661,-!p1@GFI1!1.08!10.97!GFI1;;chr5:137801160..137801176,+!p1@EGR1!1.07!1080.23!EGR1;;chr9:2015335..2015370,+!p1@SMARCA2!1.07!132.84!SMARCA2;;chr12:27485762..27485776,+!p3@ARNTL2!1.07!29.06!ARNTL2;;chr12:27485889..27485900,+!p4@ARNTL2!1.07!13.05!ARNTL2;;chr4:4861385..4861398,+!p1@MSX1!1.06!31.73!MSX1;;chr8:60031619..60031676,-!p1@TOX!1.06!23.13!TOX;;chr1:247171316..247171336,-!p3@ZNF695!1.06!15.72!ZNF695;;chr5:1883024..1883046,-!p5@IRX4!1.06!10.38!IRX4;;chr7:106810484..106810494,+!p4@HBP1!1.06!10.38!HBP1;;chr2:97202480..97202499,+!p1@ARID5A!1.05!104.67!ARID5A;;chr3:128206762..128206781,-!p2@GATA2!1.05!64.64!GATA2;;chr10:35484053..35484076,+!p1@CREM!1.05!25.50!CREM;;chr14:103059006..103059017,+!p2@RCOR1!1.05!16.01!RCOR1;;chr17:70117153..70117174,+!p1@SOX9!1.04!104.97!SOX9;;chr19:19729477..19729542,-!p1@PBX4!1.04!21.35!PBX4;;chr19:21950332..21950356,-!p2@ZNF100!1.04!21.35!ZNF100;;chr19:57791917..57791937,+!p4@ZNF460!1.04!17.49!ZNF460;;chr8:60031682..60031710,-!p2@TOX!1.04!16.31!TOX;;chr1:42801540..42801562,-!p4@FOXJ3!1.04!10.08!FOXJ3;;chr17:38020557..38020572,-!p4@IKZF3!1.04!10.08!IKZF3;;chr19:12902289..12902307,+!p1@JUNB!1.03!2243.18!JUNB;;chr12:48298765..48298783,-!p2@VDR!1.03!20.76!VDR;;chr6:137815425..137815444,-!p2@OLIG3!1.03!9.79!OLIG3;;chr8:11561453..11561466,+!p2@GATA4!1.03!9.79!GATA4;;chr9:1050331..1050363,+!p1@DMRT2!1.03!9.79!DMRT2;;chr16:69599899..69599919,+!p2@NFAT5!1.02!110.31!NFAT5;;chr7:50344251..50344288,+!p3@IKZF1!1.02!9.49!IKZF1;;chr19:19932513..19932569,-!p1@ZNF506!1.01!175.84!ZNF506;;chr5:137804484..137804498,+!p2@EGR1!1.01!37.66!EGR1;;chr7:35293685..35293718,-!p1@TBX20!1.01!9.19!TBX20;;chr11:31832549..31832562,-!p10@PAX6!1.01!9.19!PAX6;;chr19:47523058..47523114,+!p1@NPAS1!1.01!9.19!NPAS1;;chr19:45971246..45971265,+!p1@FOSB!1.00!172.28!FOSB;;chr7:148581360..148581425,-!p1@EZH2!1.00!45.07!EZH2;;chr6:126102254..126102289,+!p5@NCOA7!1.00!25.20!NCOA7;;chr1:161736038..161736056,+!p4@ATF6!1.00!21.65!ATF6;;chr19:21265028..21265052,+!p2@ZNF714!1.00!16.31!ZNF714;;chr2:45168959..45168990,+!p6@SIX3!1.00!8.90!SIX3;;chr1:203764633..203764674,+!p2@ZC3H11A!0.99!14.23!ZC3H11A;;chr8:81397876..81397898,+!p5@ZBTB10!0.99!10.38!ZBTB10;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.79!NCOA7;;chr6:106534192..106534224,+!p1@PRDM1!0.97!24.02!PRDM1;;chr2:172967621..172967637,-!p1@DLX2!0.97!23.13!DLX2;;chr16:31724618..31724630,+!p2@ZNF720!0.97!16.01!ZNF720;;chr5:1882170..1882182,-!p3@IRX4!0.97!8.30!IRX4;;chr12:57914286..57914304,-!p1@DDIT3!0.96!300.38!DDIT3;;chr19:18392236..18392248,-!p2@JUND!0.96!55.15!JUND;;chr12:27485823..27485868,+!p2@ARNTL2!0.96!34.10!ARNTL2;;chr7:19157248..19157268,-!p1@TWIST1!0.96!22.83!TWIST1;;chr14:35872453..35872485,-!p2@NFKBIA!0.96!20.46!NFKBIA;;chr4:26322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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=FF:0000625,FF:10452-106G2
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection%2528-C%2529.CNhs11049.10452-106G2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection%2528-C%2529.CNhs11049.10452-106G2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection%2528-C%2529.CNhs11049.10452-106G2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection%2528-C%2529.CNhs11049.10452-106G2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection%2528-C%2529.CNhs11049.10452-106G2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10452-106G2
-|is_a=CL:0000081;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0000625;;FF:0104053
+|is_a=CL:0000081;;EFO:0002091;;FF:0000210;;FF:0000625;;FF:0104053
+|is_obsolete=
+|library_id=CNhs11049
+|library_id_phase_based=2:CNhs11049
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10452
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10452
 |name=cord blood derived cell line:COBL-a 24h infection(-C)
 |namespace=FANTOM5
@@ Line 42: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11049,LSID722,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=106
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_weight_ug=11.14075
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=COBL-a
@@ Line 77: / Line 98: @@
 |sample_tissue=blood
 |top_motifs=CREB1:3.083618459;ATF4:2.74827858018;FOXP1:2.52944318776;NFKB1_REL_RELA:2.49962292384;HOX{A6,A7,B6,B7}:2.47356792018;NFY{A,B,C}:2.15569353908;HOXA9_MEIS1:2.0217751134;NKX2-1,4:1.89413929855;ZNF148:1.77991003939;ATF5_CREB3:1.69414855635;GFI1:1.61019488177;FOXP3:1.57375993062;MYB:1.54427038926;POU2F1..3:1.54287010992;TLX2:1.53985518037;STAT2,4,6:1.53971945646;ELK1,4_GABP{A,B1}:1.5328490176;HSF1,2:1.46960708415;AIRE:1.45805702013;RORA:1.41555459796;E2F1..5:1.37188586804;JUN:1.30894555988;ELF1,2,4:1.26601079275;YY1:1.25260428194;NRF1:1.22591197016;ATF6:1.2219961485;FOXN1:1.20439525652;NFIX:1.17923227322;RBPJ:1.14862063075;AHR_ARNT_ARNT2:1.10981262341;TEF:1.09070913281;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.08681608833;POU3F1..4:1.02978838599;STAT5{A,B}:0.950313335161;PAX4:0.90966873272;POU1F1:0.8930632576;CUX2:0.889852698608;TGIF1:0.848060912617;PBX1:0.840846436749;NANOG:0.815400870449;ZFP161:0.778763378635;TFDP1:0.764114515026;ZBTB16:0.753002508877;BPTF:0.734549434748;RFX2..5_RFXANK_RFXAP:0.727076616628;PAX3,7:0.698376614319;PAX8:0.695448083835;CRX:0.683470330585;SOX{8,9,10}:0.639787279965;HIF1A:0.638342764926;BREu{core}:0.628930509494;EVI1:0.606664483527;PITX1..3:0.572109793929;DBP:0.554298053581;CDX1,2,4:0.542947124243;TP53:0.514296460163;ADNP_IRX_SIX_ZHX:0.507558366428;MYOD1:0.48543945376;ZNF143:0.463123720391;STAT1,3:0.462535025547;RUNX1..3:0.450830047991;IRF1,2:0.426481589706;ONECUT1,2:0.415615178316;HES1:0.36126106967;ATF2:0.321850548723;RFX1:0.298037846426;SOX17:0.296965303624;ESRRA:0.248978261319;PDX1:0.232902116716;PAX2:0.222586071655;SRF:0.193639613573;FOXM1:0.190873193696;EGR1..3:0.190594275719;FOXD3:0.128801553682;LEF1_TCF7_TCF7L1,2:0.114628522643;SPI1:0.111794433495;RXR{A,B,G}:0.110259695647;XBP1:0.0900973447806;CEBPA,B_DDIT3:0.0780040297958;MAFB:0.0746726029257;FOSL2:0.0641230398196;FOS_FOS{B,L1}_JUN{B,D}:0.0595516851167;POU5F1:0.0594573689485;bHLH_family:0.0437765900065;SOX5:0.0367692554351;NKX6-1,2:0.0247875472331;GFI1B:0.0136761939083;HOX{A4,D4}:0.0133805406788;NFE2L1:-0.0202030675472;NFATC1..3:-0.0426376953252;FOXQ1:-0.0830209723017;NFE2:-0.0856095647989;SOX2:-0.094855757441;MTE{core}:-0.105274112376;MED-1{core}:-0.10930106867;MYFfamily:-0.160352176636;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.165459539019;PAX1,9:-0.174665032837;GATA6:-0.180236920851;ZNF384:-0.196345816061;ETS1,2:-0.20849841787;NFIL3:-0.228272966259;BACH2:-0.228771488878;POU6F1:-0.236699350879;IRF7:-0.257587408019;SPIB:-0.283373595432;PRRX1,2:-0.284896638996;SREBF1,2:-0.308677337017;GCM1,2:-0.332921765594;NKX3-1:-0.335226908358;HNF1A:-0.337133185426;MEF2{A,B,C,D}:-0.366418620208;ZIC1..3:-0.388119385731;TBP:-0.389313722869;PATZ1:-0.39579698825;IKZF2:-0.409530819415;HBP1_HMGB_SSRP1_UBTF:-0.419174751442;FOXA2:-0.449342572831;HNF4A_NR2F1,2:-0.493659915435;HLF:-0.512106211156;GZF1:-0.512481813093;FOX{F1,F2,J1}:-0.536861571853;DMAP1_NCOR{1,2}_SMARC:-0.547911952082;TFAP2{A,C}:-0.558025697883;MZF1:-0.56025028689;RREB1:-0.563235415353;HIC1:-0.568066573632;ESR1:-0.572524531612;TFAP2B:-0.60762799094;LHX3,4:-0.615732019907;MYBL2:-0.680450159705;LMO2:-0.682066436375;SNAI1..3:-0.683802525766;NFE2L2:-0.687868271809;FOX{D1,D2}:-0.712248257406;OCT4_SOX2{dimer}:-0.715023618583;VSX1,2:-0.735166718505;REST:-0.739941410875;NR6A1:-0.740681925105;IKZF1:-0.779191321291;ZEB1:-0.785426520855;HMGA1,2:-0.785470765126;NKX3-2:-0.791799734429;TBX4,5:-0.800212419254;ALX1:-0.858908432416;FOXL1:-0.877591317738;ARID5B:-0.880106999294;AR:-0.898568361879;TOPORS:-0.914217577166;PAX5:-0.974846096541;NKX2-3_NKX2-5:-0.986880019163;GTF2A1,2:-0.994715210193;NR5A1,2:-1.00113103401;UFEwm:-1.00855718387;PAX6:-1.0214543671;HMX1:-1.02326608796;FOX{I1,J2}:-1.02641370303;EN1,2:-1.05161277706;GATA4:-1.06188031279;CDC5L:-1.12764306629;TEAD1:-1.17083898988;NANOG{mouse}:-1.17855054234;EBF1:-1.2007648217;EP300:-1.24202642857;XCPE1{core}:-1.24389301804;HOX{A5,B5}:-1.25671521743;MAZ:-1.26794815022;GTF2I:-1.27026106537;MTF1:-1.30610702832;NHLH1,2:-1.32464789871;ZNF423:-1.35007742421;PRDM1:-1.35789714258;RXRA_VDR{dimer}:-1.37491486716;NR1H4:-1.41143653311;FOXO1,3,4:-1.45525780006;SP1:-1.49846772334;ZBTB6:-1.54480421183;KLF4:-1.553822065;TAL1_TCF{3,4,12}:-1.55996363159;NKX2-2,8:-1.56723964952;TFAP4:-1.65301589783;SMAD1..7,9:-1.68340872866;HAND1,2:-1.77230158911;TFCP2:-1.80891679295;TLX1..3_NFIC{dimer}:-1.85283405681;GLI1..3:-1.94822016337;ZNF238:-1.99709642782;ALX4:-2.02559211869;NR3C1:-2.33359405877;PPARG:-2.35138288067;T:-2.43404020877;SPZ1:-3.10465301487
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10452-106G2;search_select_hide=table117:FF:10452-106G2
 }}

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FF:10452-106G2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0