FF:10453-106G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005000 | |||
|accession_numbers=CAGE;DRX007865;DRR008737;DRZ000162;DRZ001547;DRZ011512;DRZ012897 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000255,CL:0000080 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000255,CL:0000080 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.70!500.93!IRF4;;chr11:129245736..129245758,+!p2@BARX2!2.17!146.79!BARX2;;chr12:48276548..48276564,-!p3@VDR!2.12!132.09!VDR;;chr3:189349162..189349207,+!p2@TP63!2.11!129.12!TP63;;chr13:28494130..28494168,+!p1@PDX1!2.07!115.53!PDX1;;chr3:111314186..111314204,-!p1@ZBED2!2.00!99.84!ZBED2;;chr1:212873084..212873137,-!p2@BATF3!1.98!93.54!BATF3;;chr17:38020392..38020477,-!p1@IKZF3!1.97!93.29!IKZF3;;chr14:75988831..75988847,+!p2@BATF!1.96!91.19!BATF;;chr12:103351444..103351461,+!p1@ASCL1!1.93!84.89!ASCL1;;chr17:46703687..46703740,-!p1@HOXB9!1.92!82.17!HOXB9;;chr8:11561684..11561751,+!p1@GATA4!1.91!80.44!GATA4;;chr17:45810594..45810608,+!p1@TBX21!1.90!77.85!TBX21;;chr2:231090471..231090504,+!p2@SP140!1.88!75.13!SP140;;chr14:75988771..75988826,+!p1@BATF!1.86!93.29!BATF;;chr10:64576105..64576133,-!p1@EGR2!1.79!120.97!EGR2;;chr18:55102598..55102623,+!p1@ONECUT2!1.79!60.92!ONECUT2;;chr4:57522513..57522548,-!p4@HOPX!1.76!56.35!HOPX;;chr4:57522476..57522500,-!p7@HOPX!1.74!53.87!HOPX;;chr6:135502501..135502546,+!p1@MYB!1.72!62.03!MYB;;chr6:137815524..137815537,-!p1@OLIG3!1.69!48.07!OLIG3;;chr1:212873162..212873188,-!p3@BATF3!1.69!47.70!BATF3;;chr11:129245526..129245553,+!p1@BARX2!1.66!44.48!BARX2;;chr6:135502408..135502459,+!p2@MYB!1.61!45.47!MYB;;chr9:77112244..77112262,+!p1@RORB!1.59!42.01!RORB;;chr17:40441354..40441410,+!p2@STAT5A!1.58!37.19!STAT5A;;chr15:60884706..60884743,-!p1@RORA!1.52!159.27!RORA;;chr11:31832658..31832681,-!p1@PAX6!1.52!32.00!PAX6;;chr7:50344289..50344323,+!p1@IKZF1!1.52!31.88!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.51!31.51!SP140;;chr2:176969228..176969260,+!p1@HOXD11!1.50!30.27!HOXD11;;chr1:3569072..3569093,+!p1@TP73!1.49!29.78!TP73;;chr20:50159198..50159299,-!p1@NFATC2!1.48!42.51!NFATC2;;chr1:212873061..212873080,-!p4@BATF3!1.47!28.42!BATF3;;chr2:45168875..45168916,+!p1@SIX3!1.46!27.55!SIX3;;chr19:36204309..36204335,+!p1@ZBTB32!1.45!27.06!ZBTB32;;chr17:8027418..8027432,-!p1@HES7!1.44!26.44!HES7;;chr1:212873267..212873332,-!p1@BATF3!1.43!34.60!BATF3;;chr10:104155659..104155676,+!p4@NFKB2!1.42!31.76!NFKB2;;chr17:40440359..40440386,+!p4@STAT5A!1.42!25.58!STAT5A;;chr18:55102628..55102646,+!p2@ONECUT2!1.42!25.45!ONECUT2;;chr3:141087393..141087426,+!p3@ZBTB38!1.39!90.33!ZBTB38;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.48!ELF3;;chr13:28494109..28494122,+!p2@PDX1!1.38!23.23!PDX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.35!37.44!ZNF804A;;chr3:141087339..141087387,+!p2@ZBTB38!1.34!205.86!ZBTB38;;chr3:181429741..181429767,+!p2@SOX2!1.34!20.88!SOX2;;chr6:91006518..91006570,-!p1@BACH2!1.33!46.71!BACH2;;chr1:212873200..212873230,-!p5@BATF3!1.33!20.51!BATF3;;chr8:128747846..128747860,+!p15@MYC!1.33!20.39!MYC;;chr10:64576035..64576046,-!p2@EGR2!1.33!20.39!EGR2;;chr1:25291475..25291511,-!p2@RUNX3!1.30!18.78!RUNX3;;chr20:6748325..6748352,+!p1@BMP2!1.28!26.07!BMP2;;chr3:181429704..181429722,+!p1@SOX2!1.28!18.16!SOX2;;chr17:46703436..46703460,-!p7@HOXB9!1.27!17.67!HOXB9;;chr6:36355360..36355392,-!p4@ETV7!1.27!17.55!ETV7;;chr4:144435112..144435176,+!p3@SMARCA5!1.26!34.97!SMARCA5;;chr3:111314230..111314241,-!p2@ZBED2!1.26!17.18!ZBED2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.25!23.72!NFKBIZ;;chr6:106546808..106546833,+!p3@PRDM1!1.25!21.13!PRDM1;;chr19:45252008..45252024,+!p2@BCL3!1.24!54.00!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.24!16.31!IKZF1;;chr19:47523058..47523114,+!p1@NPAS1!1.22!15.57!NPAS1;;chr2:45168834..45168847,+!p2@SIX3!1.22!15.45!SIX3;;chr13:28494375..28494416,+!p4@PDX1!1.21!15.20!PDX1;;chr4:26322267..26322334,+!p3@RBPJ!1.20!35.83!RBPJ;;chr1:158978768..158978800,+!p8@IFI16!1.19!14.46!IFI16;;chr1:25256756..25256774,-!p1@RUNX3!1.16!25.08!RUNX3;;chr9:2015335..2015370,+!p1@SMARCA2!1.15!158.66!SMARCA2;;chr12:103352277..103352324,+!p2@ASCL1!1.15!13.10!ASCL1;;chr12:52445218..52445237,+!p1@NR4A1!1.14!161.25!NR4A1;;chr21:47063625..47063658,+!p1@PCBP3!1.14!55.36!PCBP3;;chr2:176969179..176969226,+!p2@HOXD11!1.14!12.85!HOXD11;;chr3:141747950..141748004,-!p7@TFDP2!1.14!12.85!TFDP2;;chr6:135502472..135502489,+!p3@MYB!1.14!12.85!MYB;;chr3:189348969..189349018,+!p4@TP63!1.14!12.73!TP63;;chr3:141747459..141747475,-!p1@TFDP2!1.13!103.18!TFDP2;;chr19:12203100..12203132,+!p1@ZNF788!1.12!24.47!ZNF788;;chr2:231090344..231090361,-!p3@SP110!1.12!12.11!SP110;;chr13:28494180..28494196,+!p3@PDX1!1.11!11.99!PDX1;;chr17:40440446..40440464,+!p5@STAT5A!1.11!11.86!STAT5A;;chr6:144385698..144385742,-!p2@PLAGL1!1.10!13.96!PLAGL1;;chr5:1882184..1882203,-!p4@IRX4!1.10!11.62!IRX4;;chr2:61108878..61108891,+!p5@REL!1.10!11.62!REL;;chr18:77155922..77155939,+!p1@NFATC1!1.09!31.14!NFATC1;;chr12:54393880..54393962,+!p1@HOXC9!1.08!11.00!HOXC9;;chr19:19976683..19976709,+!p1@ZNF253!1.07!48.19!ZNF253;;chr2:45168997..45169020,+!p4@SIX3!1.06!10.50!SIX3;;chr1:27023752..27023799,+!p4@ARID1A!1.05!13.47!ARID1A;;chr1:201979743..201979762,+!p1@ELF3!1.05!10.26!ELF3;;chr6:137815425..137815444,-!p2@OLIG3!1.05!10.26!OLIG3;;chr7:50348268..50348366,+!p4@IKZF1!1.05!10.26!IKZF1;;chr11:61520075..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EST;;chr9:3525867..3525902,-!p3@RFX3!0.25!4.82!RFX3;;chr5:92918894..92918912,+!p2@NR2F1!0.25!4.57!NR2F1;;chr8:123793860..123793921,+!p2@ZHX2!0.25!3.71!ZHX2;;chr19:40502938..40502987,+!p1@ZNF546!0.25!3.34!ZNF546;;chrX:47341928..47342010,-!p2@ZNF41!0.25!2.47!ZNF41;;chr3:5021268..5021282,+!p4@BHLHE40!0.25!2.47!BHLHE40;;chr5:142783792..142783842,-!p5@NR3C1!0.25!2.10!NR3C1;;chr16:30621615..30621660,-!p2@ZNF689!0.25!2.10!ZNF689;;chr6:10412600..10412637,-!p1@TFAP2A!0.25!1.85!TFAP2A;;chr7:100076723..100076737,-!p3@TSC22D4!0.25!1.73!TSC22D4;;chr19:58987711..58987729,+!p2@ZNF446!0.25!1.73!ZNF446;;chr1:43148855..43148908,+!p4@YBX1!0.25!1.73!YBX1;;chr9:86593238..86593252,-!p3@HNRNPK!0.25!1.61!HNRPK;;chr14:24020938..24020988,-!p1@ZFHX2!0.25!1.48!ZFHX2;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.25!1.36!ZNF700;;chr13:114238987..114238994,+!p2@TFDP1!0.25!1.11!TFDP1;;chr19:20748603..20748606,-!p4@ZNF737!0.25!0.99!ZNF737;;chr17:30677160..30677200,+!p1@ZNF207!0.24!228.10!ZNF207;;chr9:33290491..33290564,+!p1@NFX1!0.24!57.21!NFX1;;chr18:53255415..53255491,-!p1@TCF4!0.24!12.85!TCF4;;chr1:249132512..249132547,+!p2@ZNF672!0.24!8.77!ZNF672;;chr19:35225121..35225175,+!p1@ZNF181!0.24!8.28!ZNF181;;chr16:29818160..29818188,+!p6@MAZ!0.24!6.67!MAZ;;chr17:47492252..47492265,-!p2@PHB!0.24!5.81!PHB;;chr19:23869970..23869991,-!p1@ZNF675!0.24!5.31!ZNF675;;chr4:47916543..47916580,-!p2@NFXL1!0.24!4.45!NFXL1;;chr8:146228226..146228264,-!p2@ZNF252!0.24!2.97!ZNF252P;;chr15:90544532..90544563,+!p1@ZNF710!0.24!2.35!ZNF710;;chr3:71114115..71114126,-!p14@FOXP1!0.24!1.85!FOXP1;;chr1:91487629..91487640,-!p7@ZNF644!0.24!1.85!ZNF644;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.24!1.61!ZNF816;;chr6:43140095..43140145,+!p5@SRF!0.24!1.11!SRF;;chr11:19262486..19262512,-!p4@E2F8!0.24!1.11!E2F8;;chr17:46675420..46675465,-!p3@HOXB6!0.24!0.99!HOXB6;;chr7:100076744..100076749,-!p8@TSC22D4!0.24!0.86!TSC22D4;;chr6:106546871..106546878,+!p17@PRDM1!0.24!0.74!PRDM1;;chr6:1389824..1389840,+!p3@FOXF2!0.24!0.74!FOXF2;;chr6:170871224..170871263,+!p4@TBP!0.24!0.74!TBP;;chr6:32158046..32158055,-!p4@PBX2!0.24!0.74!PBX2;;chr7:35293665..35293680,-!p2@TBX20!0.24!0.74!TBX20;;chr8:81787006..81787031,-!p2@ZNF704!0.24!0.74!ZNF704;;chr9:115819058..115819082,-!p2@ZFP37!0.24!0.74!ZFP37;;chr10:35484090..35484104,+!p6@CREM!0.24!0.74!CREM;;chr10:8097321..8097348,+!p4@GATA3!0.24!0.74!GATA3;;chr11:16629261..16629284,-!p1@SOX6!0.24!0.74!SOX6;;chr14:35872542..35872553,-!p10@NFKBIA!0.24!0.74!NFKBIA;;chr19:47523040..47523049,+!p3@NPAS1!0.24!0.74!NPAS1;;chr1:161736032..161736035,+!p6@ATF6!0.24!0.74!ATF6;;chr15:76629064..76629073,+!p3@ISL2!0.24!0.74!ISL2;;chr15:80696666..80696700,+!p4@ARNT2!0.24!0.74!ARNT2;;chr16:54319010..54319041,-!p8@IRX3!0.24!0.74!IRX3;;chr16:67881534..67881549,-!p4@CENPT!0.24!0.74!CENPT;;chr17:38020607..38020621,-!p9@IKZF3!0.24!0.74!IKZF3;;chr18:19749504..19749515,+!p5@GATA6!0.24!0.74!GATA6;;chr19:12405588..12405595,-!p4@ZNF44!0.24!0.74!ZNF44;;chr2:175199697..175199706,+!p2@SP9!0.24!0.74!SP9;;chr2:200322229..200322251,-!p3@SATB2!0.24!0.74!SATB2;;chr2:45169024..45169033,+!p12@SIX3!0.24!0.74!SIX3;;chr2:45169172..45169177,+!p11@SIX3!0.24!0.74!SIX3;;chr2:96012277..96012290,+!p5@KCNIP3!0.24!0.74!KCNIP3;; | |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.70!500.93!IRF4;;chr11:129245736..129245758,+!p2@BARX2!2.17!146.79!BARX2;;chr12:48276548..48276564,-!p3@VDR!2.12!132.09!VDR;;chr3:189349162..189349207,+!p2@TP63!2.11!129.12!TP63;;chr13:28494130..28494168,+!p1@PDX1!2.07!115.53!PDX1;;chr3:111314186..111314204,-!p1@ZBED2!2.00!99.84!ZBED2;;chr1:212873084..212873137,-!p2@BATF3!1.98!93.54!BATF3;;chr17:38020392..38020477,-!p1@IKZF3!1.97!93.29!IKZF3;;chr14:75988831..75988847,+!p2@BATF!1.96!91.19!BATF;;chr12:103351444..103351461,+!p1@ASCL1!1.93!84.89!ASCL1;;chr17:46703687..46703740,-!p1@HOXB9!1.92!82.17!HOXB9;;chr8:11561684..11561751,+!p1@GATA4!1.91!80.44!GATA4;;chr17:45810594..45810608,+!p1@TBX21!1.90!77.85!TBX21;;chr2:231090471..231090504,+!p2@SP140!1.88!75.13!SP140;;chr14:75988771..75988826,+!p1@BATF!1.86!93.29!BATF;;chr10:64576105..64576133,-!p1@EGR2!1.79!120.97!EGR2;;chr18:55102598..55102623,+!p1@ONECUT2!1.79!60.92!ONECUT2;;chr4:57522513..57522548,-!p4@HOPX!1.76!56.35!HOPX;;chr4:57522476..57522500,-!p7@HOPX!1.74!53.87!HOPX;;chr6:135502501..135502546,+!p1@MYB!1.72!62.03!MYB;;chr6:137815524..137815537,-!p1@OLIG3!1.69!48.07!OLIG3;;chr1:212873162..212873188,-!p3@BATF3!1.69!47.70!BATF3;;chr11:129245526..129245553,+!p1@BARX2!1.66!44.48!BARX2;;chr6:135502408..135502459,+!p2@MYB!1.61!45.47!MYB;;chr9:77112244..77112262,+!p1@RORB!1.59!42.01!RORB;;chr17:40441354..40441410,+!p2@STAT5A!1.58!37.19!STAT5A;;chr15:60884706..60884743,-!p1@RORA!1.52!159.27!RORA;;chr11:31832658..31832681,-!p1@PAX6!1.52!32.00!PAX6;;chr7:50344289..50344323,+!p1@IKZF1!1.52!31.88!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.51!31.51!SP140;;chr2:176969228..176969260,+!p1@HOXD11!1.50!30.27!HOXD11;;chr1:3569072..3569093,+!p1@TP73!1.49!29.78!TP73;;chr20:50159198..50159299,-!p1@NFATC2!1.48!42.51!NFATC2;;chr1:212873061..212873080,-!p4@BATF3!1.47!28.42!BATF3;;chr2:45168875..45168916,+!p1@SIX3!1.46!27.55!SIX3;;chr19:36204309..36204335,+!p1@ZBTB32!1.45!27.06!ZBTB32;;chr17:8027418..8027432,-!p1@HES7!1.44!26.44!HES7;;chr1:212873267..212873332,-!p1@BATF3!1.43!34.60!BATF3;;chr10:104155659..104155676,+!p4@NFKB2!1.42!31.76!NFKB2;;chr17:40440359..40440386,+!p4@STAT5A!1.42!25.58!STAT5A;;chr18:55102628..55102646,+!p2@ONECUT2!1.42!25.45!ONECUT2;;chr3:141087393..141087426,+!p3@ZBTB38!1.39!90.33!ZBTB38;;chr1:201979703..201979721,+!p2@ELF3!1.39!23.48!ELF3;;chr13:28494109..28494122,+!p2@PDX1!1.38!23.23!PDX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.35!37.44!ZNF804A;;chr3:141087339..141087387,+!p2@ZBTB38!1.34!205.86!ZBTB38;;chr3:181429741..181429767,+!p2@SOX2!1.34!20.88!SOX2;;chr6:91006518..91006570,-!p1@BACH2!1.33!46.71!BACH2;;chr1:212873200..212873230,-!p5@BATF3!1.33!20.51!BATF3;;chr8:128747846..128747860,+!p15@MYC!1.33!20.39!MYC;;chr10:64576035..64576046,-!p2@EGR2!1.33!20.39!EGR2;;chr1:25291475..25291511,-!p2@RUNX3!1.30!18.78!RUNX3;;chr20:6748325..6748352,+!p1@BMP2!1.28!26.07!BMP2;;chr3:181429704..181429722,+!p1@SOX2!1.28!18.16!SOX2;;chr17:46703436..46703460,-!p7@HOXB9!1.27!17.67!HOXB9;;chr6:36355360..36355392,-!p4@ETV7!1.27!17.55!ETV7;;chr4:144435112..144435176,+!p3@SMARCA5!1.26!34.97!SMARCA5;;chr3:111314230..111314241,-!p2@ZBED2!1.26!17.18!ZBED2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.25!23.72!NFKBIZ;;chr6:106546808..106546833,+!p3@PRDM1!1.25!21.13!PRDM1;;chr19:45252008..45252024,+!p2@BCL3!1.24!54.00!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.24!16.31!IKZF1;;chr19:47523058..47523114,+!p1@NPAS1!1.22!15.57!NPAS1;;chr2:45168834..45168847,+!p2@SIX3!1.22!15.45!SIX3;;chr13:28494375..28494416,+!p4@PDX1!1.21!15.20!PDX1;;chr4:26322267..26322334,+!p3@RBPJ!1.20!35.83!RBPJ;;chr1:158978768..158978800,+!p8@IFI16!1.19!14.46!IFI16;;chr1:25256756..25256774,-!p1@RUNX3!1.16!25.08!RUNX3;;chr9:2015335..2015370,+!p1@SMARCA2!1.15!158.66!SMARCA2;;chr12:103352277..103352324,+!p2@ASCL1!1.15!13.10!ASCL1;;chr12:52445218..52445237,+!p1@NR4A1!1.14!161.25!NR4A1;;chr21:47063625..47063658,+!p1@PCBP3!1.14!55.36!PCBP3;;chr2:176969179..176969226,+!p2@HOXD11!1.14!12.85!HOXD11;;chr3:141747950..141748004,-!p7@TFDP2!1.14!12.85!TFDP2;;chr6:135502472..135502489,+!p3@MYB!1.14!12.85!MYB;;chr3:189348969..189349018,+!p4@TP63!1.14!12.73!TP63;;chr3:141747459..141747475,-!p1@TFDP2!1.13!103.18!TFDP2;;chr19:12203100..12203132,+!p1@ZNF788!1.12!24.47!ZNF788;;chr2:231090344..231090361,-!p3@SP110!1.12!12.11!SP110;;chr13:28494180..28494196,+!p3@PDX1!1.11!11.99!PDX1;;chr17:40440446..40440464,+!p5@STAT5A!1.11!11.86!STAT5A;;chr6:144385698..144385742,-!p2@PLAGL1!1.10!13.96!PLAGL1;;chr5:1882184..1882203,-!p4@IRX4!1.10!11.62!IRX4;;chr2:61108878..61108891,+!p5@REL!1.10!11.62!REL;;chr18:77155922..77155939,+!p1@NFATC1!1.09!31.14!NFATC1;;chr12:54393880..54393962,+!p1@HOXC9!1.08!11.00!HOXC9;;chr19:19976683..19976709,+!p1@ZNF253!1.07!48.19!ZNF253;;chr2:45168997..45169020,+!p4@SIX3!1.06!10.50!SIX3;;chr1:27023752..27023799,+!p4@ARID1A!1.05!13.47!ARID1A;;chr1:201979743..201979762,+!p1@ELF3!1.05!10.26!ELF3;;chr6:137815425..137815444,-!p2@OLIG3!1.05!10.26!OLIG3;;chr7:50348268..50348366,+!p4@IKZF1!1.05!10.26!IKZF1;;chr11:61520075..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EST;;chr9:3525867..3525902,-!p3@RFX3!0.25!4.82!RFX3;;chr5:92918894..92918912,+!p2@NR2F1!0.25!4.57!NR2F1;;chr8:123793860..123793921,+!p2@ZHX2!0.25!3.71!ZHX2;;chr19:40502938..40502987,+!p1@ZNF546!0.25!3.34!ZNF546;;chrX:47341928..47342010,-!p2@ZNF41!0.25!2.47!ZNF41;;chr3:5021268..5021282,+!p4@BHLHE40!0.25!2.47!BHLHE40;;chr5:142783792..142783842,-!p5@NR3C1!0.25!2.10!NR3C1;;chr16:30621615..30621660,-!p2@ZNF689!0.25!2.10!ZNF689;;chr6:10412600..10412637,-!p1@TFAP2A!0.25!1.85!TFAP2A;;chr7:100076723..100076737,-!p3@TSC22D4!0.25!1.73!TSC22D4;;chr19:58987711..58987729,+!p2@ZNF446!0.25!1.73!ZNF446;;chr1:43148855..43148908,+!p4@YBX1!0.25!1.73!YBX1;;chr9:86593238..86593252,-!p3@HNRNPK!0.25!1.61!HNRPK;;chr14:24020938..24020988,-!p1@ZFHX2!0.25!1.48!ZFHX2;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.25!1.36!ZNF700;;chr13:114238987..114238994,+!p2@TFDP1!0.25!1.11!TFDP1;;chr19:20748603..20748606,-!p4@ZNF737!0.25!0.99!ZNF737;;chr17:30677160..30677200,+!p1@ZNF207!0.24!228.10!ZNF207;;chr9:33290491..33290564,+!p1@NFX1!0.24!57.21!NFX1;;chr18:53255415..53255491,-!p1@TCF4!0.24!12.85!TCF4;;chr1:249132512..249132547,+!p2@ZNF672!0.24!8.77!ZNF672;;chr19:35225121..35225175,+!p1@ZNF181!0.24!8.28!ZNF181;;chr16:29818160..29818188,+!p6@MAZ!0.24!6.67!MAZ;;chr17:47492252..47492265,-!p2@PHB!0.24!5.81!PHB;;chr19:23869970..23869991,-!p1@ZNF675!0.24!5.31!ZNF675;;chr4:47916543..47916580,-!p2@NFXL1!0.24!4.45!NFXL1;;chr8:146228226..146228264,-!p2@ZNF252!0.24!2.97!ZNF252P;;chr15:90544532..90544563,+!p1@ZNF710!0.24!2.35!ZNF710;;chr3:71114115..71114126,-!p14@FOXP1!0.24!1.85!FOXP1;;chr1:91487629..91487640,-!p7@ZNF644!0.24!1.85!ZNF644;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.24!1.61!ZNF816;;chr6:43140095..43140145,+!p5@SRF!0.24!1.11!SRF;;chr11:19262486..19262512,-!p4@E2F8!0.24!1.11!E2F8;;chr17:46675420..46675465,-!p3@HOXB6!0.24!0.99!HOXB6;;chr7:100076744..100076749,-!p8@TSC22D4!0.24!0.86!TSC22D4;;chr6:106546871..106546878,+!p17@PRDM1!0.24!0.74!PRDM1;;chr6:1389824..1389840,+!p3@FOXF2!0.24!0.74!FOXF2;;chr6:170871224..170871263,+!p4@TBP!0.24!0.74!TBP;;chr6:32158046..32158055,-!p4@PBX2!0.24!0.74!PBX2;;chr7:35293665..35293680,-!p2@TBX20!0.24!0.74!TBX20;;chr8:81787006..81787031,-!p2@ZNF704!0.24!0.74!ZNF704;;chr9:115819058..115819082,-!p2@ZFP37!0.24!0.74!ZFP37;;chr10:35484090..35484104,+!p6@CREM!0.24!0.74!CREM;;chr10:8097321..8097348,+!p4@GATA3!0.24!0.74!GATA3;;chr11:16629261..16629284,-!p1@SOX6!0.24!0.74!SOX6;;chr14:35872542..35872553,-!p10@NFKBIA!0.24!0.74!NFKBIA;;chr19:47523040..47523049,+!p3@NPAS1!0.24!0.74!NPAS1;;chr1:161736032..161736035,+!p6@ATF6!0.24!0.74!ATF6;;chr15:76629064..76629073,+!p3@ISL2!0.24!0.74!ISL2;;chr15:80696666..80696700,+!p4@ARNT2!0.24!0.74!ARNT2;;chr16:54319010..54319041,-!p8@IRX3!0.24!0.74!IRX3;;chr16:67881534..67881549,-!p4@CENPT!0.24!0.74!CENPT;;chr17:38020607..38020621,-!p9@IKZF3!0.24!0.74!IKZF3;;chr18:19749504..19749515,+!p5@GATA6!0.24!0.74!GATA6;;chr19:12405588..12405595,-!p4@ZNF44!0.24!0.74!ZNF44;;chr2:175199697..175199706,+!p2@SP9!0.24!0.74!SP9;;chr2:200322229..200322251,-!p3@SATB2!0.24!0.74!SATB2;;chr2:45169024..45169033,+!p12@SIX3!0.24!0.74!SIX3;;chr2:45169172..45169177,+!p11@SIX3!0.24!0.74!SIX3;;chr2:96012277..96012290,+!p5@KCNIP3!0.24!0.74!KCNIP3;; | ||
Line 37: | Line 40: | ||
|fonse_treatment_closure=FF:0000625,FF:10453-106G3 | |fonse_treatment_closure=FF:0000625,FF:10453-106G3 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10453-106G3 | |id=FF:10453-106G3 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0000625;;FF:0104053 | |is_a=EFO:0002091;;FF:0000210;;FF:0000625;;FF:0104053 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11050 | |||
|library_id_phase_based=2:CNhs11050 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10453 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10453 | |||
|name=cord blood derived cell line:COBL-a 24h infection | |name=cord blood derived cell line:COBL-a 24h infection | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11050,LSID722,release008,COMPLETED | |profile_hcage=CNhs11050,LSID722,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 84: | Line 99: | ||
|top_motifs=HOX{A6,A7,B6,B7}:1.95160735081;NFKB1_REL_RELA:1.78976138304;NFY{A,B,C}:1.71043348545;TLX2:1.65231652568;YY1:1.63149742272;E2F1..5:1.60626598453;HOXA9_MEIS1:1.5225882162;FOXP3:1.43849035879;NKX2-1,4:1.42110496741;CREB1:1.30885092753;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.30586523448;FOXP1:1.27253427556;GFI1:1.18934222907;BREu{core}:1.17356155303;RBPJ:1.15181441435;CRX:1.14869180682;MYB:1.12883380461;ATF4:1.12346171495;PAX4:1.08893212578;STAT5{A,B}:1.04825517698;ELF1,2,4:0.996359661605;POU3F1..4:0.996165482484;TEF:0.980781046476;AIRE:0.942184882829;RORA:0.939487306097;NRF1:0.933716835112;HES1:0.933237454587;STAT2,4,6:0.921455064601;ELK1,4_GABP{A,B1}:0.915065192711;TFDP1:0.793759290751;PAX8:0.764058722328;DBP:0.694176608949;ZFP161:0.689376972435;NANOG:0.681313237726;ONECUT1,2:0.650359518032;MYOD1:0.645227405265;PBX1:0.635680749845;POU2F1..3:0.627701872836;POU1F1:0.606321865991;AHR_ARNT_ARNT2:0.605097649567;PITX1..3:0.600606830952;RFX2..5_RFXANK_RFXAP:0.581272505699;ZNF143:0.553697017101;CDX1,2,4:0.545774486069;ATF5_CREB3:0.54560254748;LEF1_TCF7_TCF7L1,2:0.53104050542;HSF1,2:0.512742791167;RUNX1..3:0.504789572634;ESRRA:0.492094150523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.464347335362;ADNP_IRX_SIX_ZHX:0.423093072083;TGIF1:0.422201021249;ATF6:0.393994788216;FOXQ1:0.373637151902;FOXM1:0.366424921167;GCM1,2:0.353738670475;SOX{8,9,10}:0.335910325236;EVI1:0.331501602093;CUX2:0.327639596065;NFE2L1:0.313051418375;PDX1:0.288499894493;SOX17:0.282794525138;SPI1:0.254334760139;PAX1,9:0.254176442402;ESR1:0.244820536112;IRF1,2:0.236500226605;STAT1,3:0.221567248993;bHLH_family:0.22066913116;ZBTB16:0.219378197312;NKX6-1,2:0.171108377697;BPTF:0.154737534057;JUN:0.147592276583;POU5F1:0.139304923288;HIF1A:0.120147284089;FOXN1:0.113416278014;EGR1..3:0.0934498360426;PAX3,7:0.0803791686062;RXR{A,B,G}:0.0619151277101;TP53:0.0603944898272;GATA6:0.0533511472148;ZNF148:-0.00119186812144;TOPORS:-0.00861797408232;MTE{core}:-0.0165116524992;MYFfamily:-0.0587416013998;CEBPA,B_DDIT3:-0.0861517789988;MAFB:-0.11127764544;RREB1:-0.113205178379;ATF2:-0.121917275593;SOX5:-0.131789283767;HIC1:-0.139446999195;SPIB:-0.160119500433;PAX6:-0.161246618701;HNF4A_NR2F1,2:-0.170653642306;ETS1,2:-0.171102838219;RFX1:-0.186285629046;REST:-0.189350704385;NR5A1,2:-0.190458401226;TFAP2{A,C}:-0.194917014746;HOX{A4,D4}:-0.21856932423;POU6F1:-0.23054458493;HNF1A:-0.250523290823;XBP1:-0.258844627954;FOS_FOS{B,L1}_JUN{B,D}:-0.261017220053;FOSL2:-0.266379364557;NKX3-1:-0.268381768329;LHX3,4:-0.27443704991;PRRX1,2:-0.275006346035;PAX5:-0.27789311466;SOX2:-0.282662961783;NFE2:-0.286926307153;SNAI1..3:-0.300398288897;FOX{I1,J2}:-0.301527640498;MED-1{core}:-0.320283842826;FOXA2:-0.328168956076;ZIC1..3:-0.340397855632;TFAP2B:-0.349534372816;NFATC1..3:-0.35174797446;GFI1B:-0.359998713402;IKZF2:-0.360324983581;FOX{F1,F2,J1}:-0.362422461529;VSX1,2:-0.370178807798;SRF:-0.373584053649;NR1H4:-0.396720474359;PATZ1:-0.399287598425;BACH2:-0.447026733451;MYBL2:-0.452595482521;MEF2{A,B,C,D}:-0.46240830851;ZEB1:-0.468430835653;NKX3-2:-0.490001562896;IRF7:-0.495457324786;OCT4_SOX2{dimer}:-0.505924121605;FOXD3:-0.507735205098;PAX2:-0.511317986351;DMAP1_NCOR{1,2}_SMARC:-0.515878293646;LMO2:-0.517888252514;SREBF1,2:-0.522503276316;UFEwm:-0.52455188393;AR:-0.52685841904;HLF:-0.532085925305;ARID5B:-0.535389261397;EBF1:-0.55170421021;ZNF423:-0.573750895015;NFE2L2:-0.582655815868;ZNF384:-0.58546343138;IKZF1:-0.608207559892;NR6A1:-0.64491218166;NKX2-3_NKX2-5:-0.686130474285;HBP1_HMGB_SSRP1_UBTF:-0.702887065524;MZF1:-0.742705263981;NFIL3:-0.749730211375;PRDM1:-0.764577159959;RXRA_VDR{dimer}:-0.777949383642;XCPE1{core}:-0.806047915106;TBX4,5:-0.809737945842;TFAP4:-0.83551350686;KLF4:-0.851919621638;GZF1:-0.853114903157;TBP:-0.860124225925;GATA4:-0.875421960847;NHLH1,2:-0.887682677064;ALX1:-0.888956993879;HMX1:-0.890841501246;HOX{A5,B5}:-0.928255181644;MTF1:-0.947010554572;CDC5L:-0.955598640817;HAND1,2:-0.994508458566;NANOG{mouse}:-1.02900199565;EP300:-1.04124636261;NFIX:-1.05782657468;HMGA1,2:-1.10262030991;GTF2A1,2:-1.16292621691;TEAD1:-1.1847690354;EN1,2:-1.1863017014;NKX2-2,8:-1.19775048455;ZBTB6:-1.19960778557;GTF2I:-1.20504929641;ZNF238:-1.26855668311;FOX{D1,D2}:-1.26963644608;FOXL1:-1.30252367256;MAZ:-1.30794685899;TAL1_TCF{3,4,12}:-1.43396630346;PPARG:-1.43792692053;TFCP2:-1.49013205553;FOXO1,3,4:-1.49612892049;NR3C1:-1.51308312489;SP1:-1.54181080401;TLX1..3_NFIC{dimer}:-1.55665692089;GLI1..3:-1.57277115956;SMAD1..7,9:-1.61905357837;ALX4:-1.69054832744;SPZ1:-2.24394521222;T:-2.62617095875 | |top_motifs=HOX{A6,A7,B6,B7}:1.95160735081;NFKB1_REL_RELA:1.78976138304;NFY{A,B,C}:1.71043348545;TLX2:1.65231652568;YY1:1.63149742272;E2F1..5:1.60626598453;HOXA9_MEIS1:1.5225882162;FOXP3:1.43849035879;NKX2-1,4:1.42110496741;CREB1:1.30885092753;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.30586523448;FOXP1:1.27253427556;GFI1:1.18934222907;BREu{core}:1.17356155303;RBPJ:1.15181441435;CRX:1.14869180682;MYB:1.12883380461;ATF4:1.12346171495;PAX4:1.08893212578;STAT5{A,B}:1.04825517698;ELF1,2,4:0.996359661605;POU3F1..4:0.996165482484;TEF:0.980781046476;AIRE:0.942184882829;RORA:0.939487306097;NRF1:0.933716835112;HES1:0.933237454587;STAT2,4,6:0.921455064601;ELK1,4_GABP{A,B1}:0.915065192711;TFDP1:0.793759290751;PAX8:0.764058722328;DBP:0.694176608949;ZFP161:0.689376972435;NANOG:0.681313237726;ONECUT1,2:0.650359518032;MYOD1:0.645227405265;PBX1:0.635680749845;POU2F1..3:0.627701872836;POU1F1:0.606321865991;AHR_ARNT_ARNT2:0.605097649567;PITX1..3:0.600606830952;RFX2..5_RFXANK_RFXAP:0.581272505699;ZNF143:0.553697017101;CDX1,2,4:0.545774486069;ATF5_CREB3:0.54560254748;LEF1_TCF7_TCF7L1,2:0.53104050542;HSF1,2:0.512742791167;RUNX1..3:0.504789572634;ESRRA:0.492094150523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.464347335362;ADNP_IRX_SIX_ZHX:0.423093072083;TGIF1:0.422201021249;ATF6:0.393994788216;FOXQ1:0.373637151902;FOXM1:0.366424921167;GCM1,2:0.353738670475;SOX{8,9,10}:0.335910325236;EVI1:0.331501602093;CUX2:0.327639596065;NFE2L1:0.313051418375;PDX1:0.288499894493;SOX17:0.282794525138;SPI1:0.254334760139;PAX1,9:0.254176442402;ESR1:0.244820536112;IRF1,2:0.236500226605;STAT1,3:0.221567248993;bHLH_family:0.22066913116;ZBTB16:0.219378197312;NKX6-1,2:0.171108377697;BPTF:0.154737534057;JUN:0.147592276583;POU5F1:0.139304923288;HIF1A:0.120147284089;FOXN1:0.113416278014;EGR1..3:0.0934498360426;PAX3,7:0.0803791686062;RXR{A,B,G}:0.0619151277101;TP53:0.0603944898272;GATA6:0.0533511472148;ZNF148:-0.00119186812144;TOPORS:-0.00861797408232;MTE{core}:-0.0165116524992;MYFfamily:-0.0587416013998;CEBPA,B_DDIT3:-0.0861517789988;MAFB:-0.11127764544;RREB1:-0.113205178379;ATF2:-0.121917275593;SOX5:-0.131789283767;HIC1:-0.139446999195;SPIB:-0.160119500433;PAX6:-0.161246618701;HNF4A_NR2F1,2:-0.170653642306;ETS1,2:-0.171102838219;RFX1:-0.186285629046;REST:-0.189350704385;NR5A1,2:-0.190458401226;TFAP2{A,C}:-0.194917014746;HOX{A4,D4}:-0.21856932423;POU6F1:-0.23054458493;HNF1A:-0.250523290823;XBP1:-0.258844627954;FOS_FOS{B,L1}_JUN{B,D}:-0.261017220053;FOSL2:-0.266379364557;NKX3-1:-0.268381768329;LHX3,4:-0.27443704991;PRRX1,2:-0.275006346035;PAX5:-0.27789311466;SOX2:-0.282662961783;NFE2:-0.286926307153;SNAI1..3:-0.300398288897;FOX{I1,J2}:-0.301527640498;MED-1{core}:-0.320283842826;FOXA2:-0.328168956076;ZIC1..3:-0.340397855632;TFAP2B:-0.349534372816;NFATC1..3:-0.35174797446;GFI1B:-0.359998713402;IKZF2:-0.360324983581;FOX{F1,F2,J1}:-0.362422461529;VSX1,2:-0.370178807798;SRF:-0.373584053649;NR1H4:-0.396720474359;PATZ1:-0.399287598425;BACH2:-0.447026733451;MYBL2:-0.452595482521;MEF2{A,B,C,D}:-0.46240830851;ZEB1:-0.468430835653;NKX3-2:-0.490001562896;IRF7:-0.495457324786;OCT4_SOX2{dimer}:-0.505924121605;FOXD3:-0.507735205098;PAX2:-0.511317986351;DMAP1_NCOR{1,2}_SMARC:-0.515878293646;LMO2:-0.517888252514;SREBF1,2:-0.522503276316;UFEwm:-0.52455188393;AR:-0.52685841904;HLF:-0.532085925305;ARID5B:-0.535389261397;EBF1:-0.55170421021;ZNF423:-0.573750895015;NFE2L2:-0.582655815868;ZNF384:-0.58546343138;IKZF1:-0.608207559892;NR6A1:-0.64491218166;NKX2-3_NKX2-5:-0.686130474285;HBP1_HMGB_SSRP1_UBTF:-0.702887065524;MZF1:-0.742705263981;NFIL3:-0.749730211375;PRDM1:-0.764577159959;RXRA_VDR{dimer}:-0.777949383642;XCPE1{core}:-0.806047915106;TBX4,5:-0.809737945842;TFAP4:-0.83551350686;KLF4:-0.851919621638;GZF1:-0.853114903157;TBP:-0.860124225925;GATA4:-0.875421960847;NHLH1,2:-0.887682677064;ALX1:-0.888956993879;HMX1:-0.890841501246;HOX{A5,B5}:-0.928255181644;MTF1:-0.947010554572;CDC5L:-0.955598640817;HAND1,2:-0.994508458566;NANOG{mouse}:-1.02900199565;EP300:-1.04124636261;NFIX:-1.05782657468;HMGA1,2:-1.10262030991;GTF2A1,2:-1.16292621691;TEAD1:-1.1847690354;EN1,2:-1.1863017014;NKX2-2,8:-1.19775048455;ZBTB6:-1.19960778557;GTF2I:-1.20504929641;ZNF238:-1.26855668311;FOX{D1,D2}:-1.26963644608;FOXL1:-1.30252367256;MAZ:-1.30794685899;TAL1_TCF{3,4,12}:-1.43396630346;PPARG:-1.43792692053;TFCP2:-1.49013205553;FOXO1,3,4:-1.49612892049;NR3C1:-1.51308312489;SP1:-1.54181080401;TLX1..3_NFIC{dimer}:-1.55665692089;GLI1..3:-1.57277115956;SMAD1..7,9:-1.61905357837;ALX4:-1.69054832744;SPZ1:-2.24394521222;T:-2.62617095875 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10453-106G3;search_select_hide=table117:FF:10453-106G3 | |||
}} | }} |
Latest revision as of 14:03, 3 June 2020
Name: | cord blood derived cell line:COBL-a 24h infection |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11050 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11050
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11050
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.974 |
10 | 10 | 0.135 |
100 | 100 | 0.183 |
101 | 101 | 0.216 |
102 | 102 | 0.954 |
103 | 103 | 0.43 |
104 | 104 | 0.752 |
105 | 105 | 0.536 |
106 | 106 | 0.0409 |
107 | 107 | 0.0289 |
108 | 108 | 0.492 |
109 | 109 | 0.978 |
11 | 11 | 0.606 |
110 | 110 | 0.177 |
111 | 111 | 0.474 |
112 | 112 | 0.617 |
113 | 113 | 0.7 |
114 | 114 | 0.237 |
115 | 115 | 0.629 |
116 | 116 | 0.45 |
117 | 117 | 0.51 |
118 | 118 | 0.423 |
119 | 119 | 0.433 |
12 | 12 | 0.52 |
120 | 120 | 0.978 |
121 | 121 | 0.893 |
122 | 122 | 0.276 |
123 | 123 | 0.152 |
124 | 124 | 0.373 |
125 | 125 | 0.602 |
126 | 126 | 0.935 |
127 | 127 | 0.977 |
128 | 128 | 0.0258 |
129 | 129 | 0.393 |
13 | 13 | 0.215 |
130 | 130 | 0.791 |
131 | 131 | 0.489 |
132 | 132 | 0.396 |
133 | 133 | 0.975 |
134 | 134 | 0.301 |
135 | 135 | 0.812 |
136 | 136 | 0.465 |
137 | 137 | 0.503 |
138 | 138 | 0.153 |
139 | 139 | 0.555 |
14 | 14 | 0.792 |
140 | 140 | 0.324 |
141 | 141 | 0.245 |
142 | 142 | 0.991 |
143 | 143 | 0.99 |
144 | 144 | 0.494 |
145 | 145 | 0.434 |
146 | 146 | 0.291 |
147 | 147 | 0.131 |
148 | 148 | 0.222 |
149 | 149 | 0.00691 |
15 | 15 | 0.708 |
150 | 150 | 0.465 |
151 | 151 | 0.319 |
152 | 152 | 0.0794 |
153 | 153 | 0.209 |
154 | 154 | 0.788 |
155 | 155 | 0.403 |
156 | 156 | 0.681 |
157 | 157 | 0.938 |
158 | 158 | 0.998 |
159 | 159 | 0.485 |
16 | 16 | 0.281 |
160 | 160 | 0.35 |
161 | 161 | 0.54 |
162 | 162 | 0.153 |
163 | 163 | 0.56 |
164 | 164 | 0.711 |
165 | 165 | 0.84 |
166 | 166 | 0.81 |
167 | 167 | 0.142 |
168 | 168 | 0.549 |
169 | 169 | 0.0292 |
17 | 17 | 0.339 |
18 | 18 | 0.731 |
19 | 19 | 0.0241 |
2 | 2 | 0.119 |
20 | 20 | 0.146 |
21 | 21 | 0.0244 |
22 | 22 | 0.0687 |
23 | 23 | 0.0171 |
24 | 24 | 0.221 |
25 | 25 | 0.55 |
26 | 26 | 0.682 |
27 | 27 | 0.285 |
28 | 28 | 0.63 |
29 | 29 | 0.487 |
3 | 3 | 0.588 |
30 | 30 | 0.0306 |
31 | 31 | 0.251 |
32 | 32 | 0.0319 |
33 | 33 | 0.861 |
34 | 34 | 0.226 |
35 | 35 | 0.789 |
36 | 36 | 0.0649 |
37 | 37 | 0.641 |
38 | 38 | 0.512 |
39 | 39 | 0.155 |
4 | 4 | 0.194 |
40 | 40 | 0.959 |
41 | 41 | 0.23 |
42 | 42 | 0.464 |
43 | 43 | 0.437 |
44 | 44 | 0.957 |
45 | 45 | 0.0705 |
46 | 46 | 0.595 |
47 | 47 | 0.955 |
48 | 48 | 0.859 |
49 | 49 | 0.706 |
5 | 5 | 0.162 |
50 | 50 | 0.731 |
51 | 51 | 0.625 |
52 | 52 | 0.0993 |
53 | 53 | 0.662 |
54 | 54 | 0.226 |
55 | 55 | 6.232e-4 |
56 | 56 | 0.792 |
57 | 57 | 0.971 |
58 | 58 | 0.709 |
59 | 59 | 0.148 |
6 | 6 | 0.974 |
60 | 60 | 0.234 |
61 | 61 | 0.58 |
62 | 62 | 0.965 |
63 | 63 | 0.385 |
64 | 64 | 0.692 |
65 | 65 | 0.246 |
66 | 66 | 0.0365 |
67 | 67 | 0.161 |
68 | 68 | 0.122 |
69 | 69 | 0.0524 |
7 | 7 | 0.748 |
70 | 70 | 0.123 |
71 | 71 | 0.495 |
72 | 72 | 0.271 |
73 | 73 | 0.123 |
74 | 74 | 0.494 |
75 | 75 | 0.769 |
76 | 76 | 0.268 |
77 | 77 | 0.00413 |
78 | 78 | 0.32 |
79 | 79 | 0.0223 |
8 | 8 | 0.489 |
80 | 80 | 0.377 |
81 | 81 | 0.571 |
82 | 82 | 0.106 |
83 | 83 | 0.262 |
84 | 84 | 0.358 |
85 | 85 | 0.0208 |
86 | 86 | 0.787 |
87 | 87 | 0.351 |
88 | 88 | 0.455 |
89 | 89 | 0.0224 |
9 | 9 | 0.18 |
90 | 90 | 0.886 |
91 | 91 | 0.478 |
92 | 92 | 0.234 |
93 | 93 | 0.634 |
94 | 94 | 0.979 |
95 | 95 | 0.467 |
96 | 96 | 0.797 |
97 | 97 | 0.0419 |
98 | 98 | 0.138 |
99 | 99 | 0.115 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11050
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000625 experimental infection sample
FF:0104053 umbilical cord blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000080 (circulating cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000178 (blood)
0002331 (umbilical cord)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0101035 (hematopoietic cell line sample)
0104053 (umbilical cord blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA