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{{f5samples
{{f5samples
|id=FF:10513-107D9
|DRA_sample_Accession=CAGE@SAMD00005511
|name=colon carcinoma cell line:CACO-2
|accession_numbers=CAGE;DRX007862;DRR008734;DRZ000159;DRZ001544;DRZ011509;DRZ012894
|sample_id=10513
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001052,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
|rna_tube_id=107D9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251,CL:0002253
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119
|rna_position=D9
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101913,FF:0101120,FF:0100167,FF:0100797,FF:0101532,FF:0101914,FF:0101616,FF:0100195
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB0988
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.45!277.76!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.11!127.22!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!2.10!197.33!FOXQ1;;chr20:42984330..42984364,+!p2@HNF4A!2.00!99.80!HNF4A;;chr1:201979743..201979762,+!p1@ELF3!1.75!54.84!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.72!52.02!FOXA1;;chr18:19749541..19749557,+!p1@GATA6!1.71!153.37!GATA6;;chr15:96869511..96869525,+!p16@NR2F2!1.58!41.28!NR2F2;;chr5:134369905..134369972,-!p1@PITX1!1.54!50.60!PITX1;;chr20:31350184..31350200,+!p1@DNMT3B!1.53!67.00!DNMT3B;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.38!GRHL2;;chrX:131547625..131547644,-!p4@MBNL3!1.51!31.38!MBNL3;;chr2:171571827..171571853,+!p1@SP5!1.48!29.40!SP5;;chr11:61520075..61520136,+!p1@C11orf9!1.47!58.52!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!1.47!28.84!PITX1;;chr6:126221034..126221056,+!p13@NCOA7!1.43!25.87!NCOA7;;chr1:164528687..164528711,+!p6@PBX1!1.39!27.42!PBX1;;chr20:22564895..22564910,-!p1@FOXA2!1.39!23.75!FOXA2;;chr13:28543285..28543314,-!p2@CDX2!1.39!23.61!CDX2;;chr1:42801540..42801562,-!p4@FOXJ3!1.37!22.48!FOXJ3;;chr2:16080659..16080685,+!p1@MYCN!1.35!21.20!MYCN;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.33!20.50!SEBOX;;chr5:2751762..2751784,-!p1@IRX2!1.33!20.35!IRX2;;chr1:201979703..201979721,+!p2@ELF3!1.31!19.65!ELF3;;chr11:120107344..120107351,+!p1@POU2F3!1.29!22.48!POU2F3;;chr4:111558135..111558198,-!p2@PITX2!1.29!18.66!PITX2;;chr16:85932760..85932775,+!p1@IRF8!1.28!18.09!IRF8;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!19.79!TFAP2C;;chr17:45928521..45928539,-!p1@SP6!1.21!15.27!SP6;;chr1:209979467..209979494,-!p1@IRF6!1.19!16.40!IRF6;;chr20:43029862..43029900,+!p1@HNF4A!1.19!14.42!HNF4A;;chr17:36105042..36105060,-!p1@HNF1B!1.19!14.42!HNF1B;;chr20:42295745..42295765,+!p1@MYBL2!1.15!211.32!MYBL2;;chr2:171572786..171572840,+!p2@SP5!1.15!13.29!SP5;;chr6:126240442..126240459,+!p4@NCOA7!1.14!16.40!NCOA7;;chr2:171571931..171571959,+!p3@SP5!1.14!12.72!SP5;;chr5:174151612..174151633,+!p2@MSX2!1.13!12.58!MSX2;;chr3:71355163..71355209,-!p5@FOXP1!1.11!16.54!FOXP1;;chr1:247171316..247171336,-!p3@ZNF695!1.10!17.25!ZNF695;;chr18:19749386..19749404,+!p2@GATA6!1.10!16.68!GATA6;;chr10:8095593..8095625,+!p3@GATA3!1.10!13.71!GATA3;;chr5:174151553..174151610,+!p1@MSX2!1.09!18.94!MSX2;;chr13:28543431..28543487,-!p1@CDX2!1.08!11.03!CDX2;;chr14:38064590..38064606,-!p2@FOXA1!1.08!11.03!FOXA1;;chr11:19263160..19263176,-!p1@E2F8!1.07!12.58!E2F8;;chr8:102504690..102504704,+!p3@GRHL2!1.07!10.74!GRHL2;;chr9:138591319..138591340,-!p1@SOHLH1!1.06!10.60!SOHLH1;;chr20:42295713..42295738,+!p2@MYBL2!1.05!61.63!MYBL2;;chr3:181429704..181429722,+!p1@SOX2!1.03!9.75!SOX2;;chr13:28543388..28543406,-!p3@CDX2!1.03!9.75!CDX2;;chr13:73633131..73633149,+!p1@KLF5!1.01!101.49!KLF5;;chr17:48045917..48045977,+!p1@DLX4!1.01!9.19!DLX4;;chr6:126240380..126240430,+!p2@NCOA7!0.99!23.46!NCOA7;;chr20:50159198..50159299,-!p1@NFATC2!0.99!13.00!NFATC2;;chr7:156803329..156803362,-!p1@MNX1!0.99!8.76!MNX1;;chr17:53342311..53342400,+!p1@HLF!0.96!9.47!HLF;;chr7:27135591..27135658,-!p1@HOXA1!0.95!15.55!HOXA1;;chr11:65554528..65554546,+!p1@OVOL1!0.94!7.77!OVOL1;;chr22:22874610..22874616,-!p1@ZNF280A!0.94!7.63!ZNF280A;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.21!TFCP2L1;;chr3:181429741..181429767,+!p2@SOX2!0.91!7.21!SOX2;;chr10:60145155..60145206,+!p1@TFAM!0.90!315.78!TFAM;;chr12:52445218..52445237,+!p1@NR4A1!0.89!89.76!NR4A1;;chr19:33793430..33793447,-!p1@CEBPA!0.89!30.11!CEBPA;;chr10:97889464..97889494,+!p3@ZNF518A!0.89!13.00!ZNF518A;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.61!HOXB7;;chr19:46367576..46367592,+!p1@FOXA3!0.89!6.78!FOXA3;;chr10:63661437..63661465,+!p2@ARID5B!0.88!133.30!ARID5B;;chr11:16419037..16419064,-!p3@SOX6!0.88!6.64!SOX6;;chr7:27196267..27196311,-!p1@HOXA7!0.88!6.64!HOXA7;;chr18:19749517..19749531,+!p3@GATA6!0.87!11.87!GATA6;;chr2:25475120..25475176,-!p2@DNMT3A!0.87!8.91!DNMT3A;;chr7:115608357..115608372,-!p3@TFEC!0.87!6.36!TFEC;;chr11:65554563..65554576,+!p2@OVOL1!0.87!6.36!OVOL1;;chr20:50418128..50418147,-!p2@SALL4!0.86!6.22!SALL4;;chr3:193853927..193853944,+!p1@HES1!0.85!209.77!HES1;;chr19:58326246..58326262,-!p2@ZNF552!0.85!14.98!ZNF552;;chr13:28543316..28543329,-!p4@CDX2!0.85!6.08!CDX2;;chr2:63277948..63277974,+!p1@OTX1!0.83!5.80!OTX1;;chr17:41622765..41622821,-!p2@ETV4!0.82!8.91!ETV4;;chr5:138609489..138609542,+!p8@MATR3!0.82!5.65!MATR3;;chr17:47492203..47492214,-!p3@PHB!0.80!8.62!PHB;;chr17:48046543..48046575,+!p2@DLX4!0.80!5.37!DLX4;;chr5:2751785..2751808,-!p2@IRX2!0.80!5.37!IRX2;;chr9:129376201..129376225,+!p1@LMX1B!0.80!5.37!LMX1B;;chr19:926001..926046,+!p1@ARID3A!0.79!19.08!ARID3A;;chr10:64576105..64576133,-!p1@EGR2!0.79!11.31!EGR2;;chr13:28543253..28543276,-!p5@CDX2!0.79!5.23!CDX2;;chr1:247171347..247171366,-!p2@ZNF695!0.78!9.61!ZNF695;;chr14:37131058..37131139,+!p1@PAX9!0.78!5.09!PAX9;;chr18:53069219..53069253,-!p35@TCF4!0.78!5.09!TCF4;;chr12:121416340..121416360,+!p1@HNF1A!0.77!4.95!HNF1A;;chr10:96122645..96122675,-!p2@NOC3L!0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597;;chr2:174828836..174828885,-!p5@SP3!0.18!4.24!SP3;;chr10:44101850..44101896,+!p1@ZNF485!0.18!3.53!ZNF485;;chr19:54041382..54041437,+!p3@ZNF331!0.18!3.11!ZNF331;;chr1:33721900..33721921,+!p2@ZNF362!0.18!2.54!ZNF362;;chr15:96874244..96874259,+!p5@NR2F2!0.18!2.54!NR2F2;;chr7:102985288..102985310,-!p2@DNAJC2!0.18!2.40!DNAJC2;;chr6:7108179..7108199,+!p4@RREB1!0.18!1.98!RREB1;;chr1:8939265..8939367,-!p5@ENO1!0.18!1.98!ENO1;;chr3:25469724..25469773,+!p1@RARB!0.18!1.13!RARB;;chr3:42947600..42947680,+!p1@ZNF662!0.18!1.13!ZNF662;;chr20:46130727..46130734,+!p4@NCOA3!0.18!0.99!NCOA3;;chr16:68573640..68573660,+!p3@ZFP90!0.18!0.99!ZFP90;;chr18:3449330..3449344,+!p10@TGIF1!0.18!0.99!TGIF1;;chr6:15249097..15249115,+!p7@JARID2!0.18!0.99!JARID2;;chr11:67007611..67007622,+!p6@KDM2A!0.18!0.99!KDM2A;;chr12:57505581..57505598,-!p4@STAT6!0.18!0.85!STAT6;;chr1:6684918..6684936,+!p2@THAP3!0.18!0.85!THAP3;;chr20:52210338..52210352,-!p4@ZNF217!0.18!0.85!ZNF217;;chr9:99180597..99180614,-!p3@ZNF367!0.18!0.71!ZNF367;;chr2:25565329..25565342,-!p6@DNMT3A!0.18!0.71!DNMT3A;;chr17:17726892..17726903,-!p6@SREBF1!0.18!0.71!SREBF1;;chr17:46125707..46125746,+!p2@NFE2L1!0.17!70.82!NFE2L1;;chr19:10305581..10305646,-!p1@DNMT1!0.17!46.22!DNMT1;;chr8:128748308..128748324,+!p2@MYC!0.17!36.89!MYC;;chr10:114709999..114710031,+!p1@TCF7L2!0.17!31.66!TCF7L2;;chr3:33481835..33481905,-!p1@UBP1!0.17!22.33!UBP1;;chr4:95128748..95128794,+!p1@SMARCAD1!0.17!15.97!SMARCAD1;;chr19:57791328..57791377,+!p2@ZNF460!0.17!15.69!ZNF460;;chr7:64254793..64254813,+!p1@ZNF138!0.17!14.84!ZNF138;;chr16:3451184..3451264,+!p1@ZNF174!0.17!13.43!ZNF174;;chr3:141868293..141868355,-!p2@TFDP2!0.17!10.88!TFDP2;;chr19:11925071..11925113,+!p1@ZNF440!0.17!9.05!ZNF440;;chr16:71918033..71918101,-!p1@ZNF821!0.17!4.24!ZNF821;;chr1:8484314..8484348,-!p7@RERE!0.17!2.83!RERE;;chr19:35168633..35168652,+!p2@ZNF302!0.17!2.40!ZNF302;;chr13:74708372..74708409,-!p4@KLF12!0.17!2.26!KLF12;;chr20:48807091..48807123,+!p7@CEBPB!0.17!2.12!CEBPB;;chr7:99070527..99070542,+!p2@ZNF789!0.17!2.12!ZNF789;;chr12:133706820..133706881,-!p1@ZNF891!0.17!1.98!ZNF891;;chr14:23755247..23755278,-!p2@HOMEZ!0.17!1.84!HOMEZ;;chr16:3285119..3285133,-!p2@ZNF200!0.17!1.84!ZNF200;;chr12:432372..432377,-!p3@KDM5A!0.17!1.27!KDM5A;;chr1:204042275..204042286,+!p4@SOX13!0.17!1.27!SOX13;;chr9:86593238..86593252,-!p3@HNRNPK!0.17!1.13!HNRPK;;chr19:35417844..35417877,+!p2@ZNF30!0.17!1.13!ZNF30;;chr15:96869114..96869160,+!p11@NR2F2!0.17!0.99!NR2F2;;chr16:67063248..67063261,+!p5@CBFB!0.17!0.99!CBFB;;chr17:65821795..65821826,+!p3@BPTF!0.17!0.99!BPTF;;chr10:43134047..43134079,-!p3@ZNF33B!0.17!0.99!ZNF33B;;chr12:80083722..80083766,-!p12@PAWR!0.17!0.99!PAWR;;chr13:41635486..41635497,-!p11@ELF1!0.17!0.99!ELF1;;chr3:39195139..39195150,-!p3@CSRNP1!0.17!0.85!CSRNP1;;chr10:44144240..44144252,-!p4@ZNF32!0.17!0.71!ZNF32;;chr14:45722261..45722272,-!p5@MIS18BP1!0.17!0.71!MIS18BP1;;chr6:44355325..44355340,+!p4@CDC5L!0.17!0.71!CDC5L;;chr17:41623075..41623101,-!p9@ETV4!0.17!0.71!ETV4;;chr3:12329320..12329338,+!p4@PPARG!0.17!0.57!PPARG;;chr6:43140149..43140177,+!p8@SRF!0.17!0.57!SRF;;chr22:39916558..39916579,+!p1@ATF4!0.16!379.82!ATF4;;chr6:136610911..136610990,-!p1@BCLAF1!0.16!117.32!BCLAF1;;chr19:11071685..11071798,+!p1@SMARCA4!0.16!36.75!SMARCA4;;chr4:144434584..144434709,+!p2@SMARCA5!0.16!30.81!SMARCA5;;chr2:174828892..174828972,-!p2@SP3!0.16!8.76!SP3;;chr14:74318611..74318682,+!p1@PTGR2,p2@ZNF410!0.16!8.34!ZNF410;;chr19:56110859..56110917,-!p1@FIZ1!0.16!7.77!FIZ1;;chr6:44355257..44355315,+!p2@CDC5L!0.16!5.23!CDC5L;;chr12:27485823..27485868,+!p2@ARNTL2!0.16!4.52!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.16!3.82!FOXP1;;chr1:8763296..8763339,-!p9@RERE!0.16!2.40!RERE;;chr7:137563945..137564001,-!p6@CREB3L2!0.16!2.26!CREB3L2;;chr17:61920246..61920272,-!p4@SMARCD2!0.16!2.12!SMARCD2;;chr19:12512062..12512094,-!p1@ZNF799!0.16!1.84!ZNF799;;chr1:33721873..33721898,+!p3@ZNF362!0.16!1.70!ZNF362;;chr12:12764947..12764986,+!p2@CREBL2!0.16!1.70!CREBL2;;chr2:242576946..242576996,-!p4@THAP4!0.16!1.70!THAP4;;chr11:57103312..57103321,-!p2@SSRP1!0.16!1.55!SSRP1;;chr16:30621615..30621660,-!p2@ZNF689!0.16!1.55!ZNF689;;chr13:115079801..115079832,+!p2@CHAMP1!0.16!1.41!CHAMP1;;chr8:124286670..124286702,-!p3@ZHX1!0.16!1.41!ZHX1;;chr16:73082004..73082033,-!p5@ZFHX3!0.16!1.27!ZFHX3;;chr20:48807430..48807439,+!p8@CEBPB!0.16!1.13!CEBPB;;chr11:67007535..67007546,+!p7@KDM2A!0.16!1.13!KDM2A;;chr10:77161650..77161661,-!p4@ZNF503!0.16!0.99!ZNF503;;chr7:137563905..137563916,-!p11@CREB3L2!0.16!0.99!CREB3L2;;chr12:80084137..80084165,-!p10@PAWR!0.16!0.85!PAWR;;chr6:7108210..7108221,+!p7@RREB1!0.16!0.71!RREB1;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.16!0.71!ZNF551;;chr10:63808979..63808990,+!p8@ARID5B!0.16!0.57!ARID5B;;chr17:42295955..42295964,-!p22@UBTF!0.16!0.57!UBTF;;chr5:150080543..150080664,-!p1@RBM22!0.15!54.84!RBM22;;chr6:170863423..170863484,+!p1@TBP!0.15!26.15!TBP;;chr11:66886717..66886762,+!p1@KDM2A!0.15!25.44!KDM2A;;chr17:73780879..73780963,+!p1@UNK!0.15!21.06!UNK;;chr6:35464817..35464894,-!p1@TEAD3!0.15!19.08!TEAD3;;chr2:27805880..27805967,+!p1@ZNF512!0.15!17.10!ZNF512;;chr6:155635583..155635644,-!p1@TFB1M!0.15!15.69!TFB1M;;chr12:77459306..77459365,-!p1@E2F7!0.15!15.27!E2F7;;chr3:44690211..44690267,+!p1@ZNF35!0.15!10.32!ZNF35;;chr11:67007548..67007610,+!p3@KDM2A!0.15!8.91!KDM2A;;chr2:42795839..42795887,+!p2@MTA3!0.15!7.92!MTA3;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.15!7.77!SOX7;;chr1:227751231..227751273,+!p1@ZNF678!0.15!7.49!ZNF678;;chr16:30621663..30621718,-!p1@ZNF689!0.15!5.51!ZNF689;;chr10:35415978..35416050,+!p5@CREM!0.15!4.52!CREM;;chr19:20011744..20011770,+!p1@ZNF93!0.15!4.24!ZNF93;;chr19:11071652..11071682,+!p3@SMARCA4!0.15!3.68!SMARCA4;;chr15:37393449..37393528,-!p4@MEIS2!0.15!2.69!MEIS2;;chr20:44600496..44600541,-!p2@ZNF335!0.15!2.54!ZNF335;;chr3:12329397..12329433,+!p2@PPARG!0.15!2.12!PPARG;;chr11:615570..615721,-!p2@IRF7!0.15!1.70!IRF7;;chr19:19496539..19496576,+!p8@GATAD2A!0.15!1.41!GATAD2A;;chr1:91487806..91487826,-!p5@ZNF644!0.15!1.41!ZNF644;;chr1:204042723..204042784,+!p3@SOX13!0.15!1.27!SOX13;;chr16:29818199..29818216,+!p11@MAZ!0.15!1.27!MAZ;;chr12:6798731..6798751,-!p4@ZNF384!0.15!1.13!ZNF384;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.15!1.13!ZNF816;;chr9:32550965..32551031,-!p4@TOPORS!0.15!1.13!TOPORS;;chr6:168227611..168227624,+!p2@MLLT4!0.15!0.99!MLLT4;;chr1:78445179..78445193,-!p5@FUBP1!0.15!0.99!FUBP1;;chr6:151712968..151712992,-!p5@ZBTB2!0.15!0.85!ZBTB2;;chr6:21597283..21597312,+!p7@SOX4!0.15!0.85!SOX4;;chr11:57103283..57103290,-!p3@SSRP1!0.15!0.85!SSRP1;;chr14:58817788..58817805,+!p5@ARID4A!0.15!0.71!ARID4A;;chr6:10415276..10415341,-!p2@TFAP2A!0.15!0.71!TFAP2A;;chr8:124286761..124286773,-!p4@ZHX1!0.15!0.71!ZHX1;;chr7:1577111..1577132,+!p4@MAFK!0.15!0.57!MAFK;;chr5:124082470..124082483,-!p8@ZNF608!0.15!0.42!ZNF608;;chr5:180288373..180288380,-!p5@ZFP62!0.15!0.42!ZFP62;;chr6:27356595..27356611,+!p6@ZNF391!0.15!0.42!ZNF391;;chr6:27440578..27440596,-!p8@ZNF184!0.15!0.42!ZNF184;;chr6:32095504..32095516,-!p9@ATF6B!0.15!0.42!ATF6B;;chr6:34524093..34524135,-!p1@SPDEF!0.15!0.42!SPDEF;;chr7:149470826..149470844,-!p6@ZNF467!0.15!0.42!ZNF467;;chr7:20826426..20826432,-!p2@SP8!0.15!0.42!SP8;;chr7:35293665..35293680,-!p2@TBX20!0.15!0.42!TBX20;;chr7:64363682..64363692,+!p4@ZNF273!0.15!0.42!ZNF273;;chr7:96635178..96635181,+!p1@DLX6!0.15!0.42!DLX6;;chr7:96635448..96635470,+!p5@DLX6!0.15!0.42!DLX6;;chr8:86089472..86089483,+!p9@E2F5!0.15!0.42!E2F5;;chrX:118739782..118739829,-!p2@NKRF!0.15!0.42!NKRF;;chr15:57025732..57025743,-!p6@ZNF280D!0.15!0.42!ZNF280D;;chr15:76629064..76629073,+!p3@ISL2!0.15!0.42!ISL2;;chr15:96869165..96869183,+!p20@NR2F2!0.15!0.42!NR2F2;;chr16:54320127..54320148,-!p6@IRX3!0.15!0.42!IRX3;;chr16:54320280..54320291,-!p9@IRX3!0.15!0.42!IRX3;;chr16:67881534..67881549,-!p4@CENPT!0.15!0.42!CENPT;;chr16:67881617..67881626,-!p6@CENPT!0.15!0.42!CENPT;;chr17:26695013..26695024,-!p7@SEBOX!0.15!0.42!SEBOX;;chr17:40469457..40469494,-!p14@STAT3!0.15!0.42!STAT3;;chr17:41623634..41623645,-!p15@ETV4!0.15!0.42!ETV4;;chr17:70121709..70121718,+!p2@SOX9!0.15!0.42!SOX9;;chr17:7197881..7197901,-!p3@YBX2!0.15!0.42!YBX2;;chr18:32870122..32870133,-!p2@ZSCAN30!0.15!0.42!ZSCAN30;;chr18:53255323..53255332,-!p31@TCF4!0.15!0.42!TCF4;;chr19:12405588..12405595,-!p4@ZNF44!0.15!0.42!ZNF44;;chr19:12444399..12444415,-!p5@ZNF563!0.15!0.42!ZNF563;;chr19:16435423..16435484,+!p5@KLF2!0.15!0.42!KLF2;;chr19:24270027..24270034,+!p8@ZNF254!0.15!0.42!ZNF254;;chr21:43428446..43428452,-!p2@ZNF295!0.15!0.42!ZNF295;;
|sample_dev_stage=
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0010316
|sample_tissue=colon
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=72
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.06
|rna_od260/280=2.1
|sample_cell_type=unclassifiable
|sample_cell_line=CACO-2
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=colon carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=35.5765
|rna_concentration=1.42306
|sample_note=
|profile_hcage=CNhs11280,LSID759,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000059,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000077,UBERON:0000160,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001046,UBERON:0001052,UBERON:0001062,UBERON:0001155,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004907,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:299,DOID:305,DOID:3119,DOID:4
|sample_description=
|fonse_cell_line=FF:0101120,FF:0101532
|fonse_cell_line=FF:0101120,FF:0101532
|fonse_cell_line_closure=FF:0101120,FF:0101532
|fonse_cell_line_closure=FF:0101120,FF:0101532
Line 66: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|name=colon carcinoma cell line:CACO-2
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|rna_box=107
|rna_catalog_number=
|rna_concentration=1.42306
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.06
|rna_od260/280=2.1
|rna_position=D9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107D9
|rna_weight_ug=35.5765
|sample_age=72
|sample_category=cell lines
|sample_cell_catalog=RCB0988
|sample_cell_line=CACO-2
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=colon carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.68958024672682e-257!GO:0043226;organelle;1.00401799172539e-213!GO:0043229;intracellular organelle;4.72771970737554e-213!GO:0043231;intracellular membrane-bound organelle;1.91746456882415e-210!GO:0043227;membrane-bound organelle;2.73010847922594e-210!GO:0005737;cytoplasm;1.07919804816458e-196!GO:0044422;organelle part;1.12185212162153e-167!GO:0044446;intracellular organelle part;3.91783195123147e-166!GO:0044444;cytoplasmic part;4.59635318838561e-149!GO:0032991;macromolecular complex;9.40752075854652e-106!GO:0044237;cellular metabolic process;1.83461537545151e-100!GO:0044238;primary metabolic process;1.9418277619225e-100!GO:0030529;ribonucleoprotein complex;2.41218748187379e-91!GO:0005739;mitochondrion;1.50472961644369e-83!GO:0044428;nuclear part;1.70709250604879e-82!GO:0043170;macromolecule metabolic process;7.89492423688282e-82!GO:0043233;organelle lumen;1.59293897792817e-81!GO:0031974;membrane-enclosed lumen;1.59293897792817e-81!GO:0003723;RNA binding;4.06195703978983e-79!GO:0005634;nucleus;1.84051420502778e-78!GO:0005515;protein binding;1.62346904951449e-62!GO:0006396;RNA processing;1.61483249622353e-56!GO:0031090;organelle membrane;6.65224067891762e-56!GO:0005840;ribosome;9.98101527502242e-55!GO:0044429;mitochondrial part;3.41630586249809e-53!GO:0043234;protein complex;1.31174335541467e-52!GO:0006412;translation;5.74365031577259e-51!GO:0019538;protein metabolic process;1.72976762911149e-50!GO:0009058;biosynthetic process;5.06514519663004e-50!GO:0016043;cellular component organization and biogenesis;1.69520633450913e-49!GO:0031967;organelle envelope;1.27155991839135e-47!GO:0031975;envelope;1.84587902022087e-47!GO:0031981;nuclear lumen;3.08628524869078e-47!GO:0003735;structural constituent of ribosome;1.70471710948266e-46!GO:0044249;cellular biosynthetic process;2.12340418989195e-45!GO:0033036;macromolecule localization;2.90714274310433e-45!GO:0015031;protein transport;5.07407499492409e-45!GO:0044267;cellular protein metabolic process;4.23904917767888e-44!GO:0044260;cellular macromolecule metabolic process;9.42866955339873e-44!GO:0043228;non-membrane-bound organelle;1.61573096166516e-43!GO:0043232;intracellular non-membrane-bound organelle;1.61573096166516e-43!GO:0016071;mRNA metabolic process;4.82580258114159e-43!GO:0008104;protein localization;6.41647320270141e-41!GO:0045184;establishment of protein localization;1.08383726669115e-40!GO:0043283;biopolymer metabolic process;3.25393116191698e-40!GO:0009059;macromolecule biosynthetic process;1.89234824203413e-39!GO:0033279;ribosomal subunit;1.16172857663332e-38!GO:0006996;organelle organization and biogenesis;8.96129866303217e-38!GO:0008380;RNA splicing;2.50701866434814e-37!GO:0006397;mRNA processing;2.91783281598052e-37!GO:0006259;DNA metabolic process;4.33335945196742e-37!GO:0065003;macromolecular complex assembly;1.77250390189506e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.60707453707063e-36!GO:0046907;intracellular transport;1.11937758861392e-35!GO:0005829;cytosol;2.3139465388362e-35!GO:0007049;cell cycle;2.55720054613986e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.35026523097886e-34!GO:0010467;gene expression;5.17587358783958e-34!GO:0022607;cellular component assembly;9.29367890631551e-33!GO:0005740;mitochondrial envelope;7.20079287250057e-32!GO:0019866;organelle inner membrane;1.63339471441999e-31!GO:0006886;intracellular protein transport;7.47437174789806e-31!GO:0031966;mitochondrial membrane;5.91270509583175e-30!GO:0005743;mitochondrial inner membrane;5.76080017103213e-29!GO:0005681;spliceosome;6.25215507637029e-28!GO:0005654;nucleoplasm;1.68550621275077e-27!GO:0000166;nucleotide binding;2.85051118807379e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.79249402126959e-26!GO:0022402;cell cycle process;8.1692417397619e-26!GO:0000278;mitotic cell cycle;2.06428607556252e-25!GO:0031980;mitochondrial lumen;2.27344359802278e-25!GO:0005759;mitochondrial matrix;2.27344359802278e-25!GO:0006974;response to DNA damage stimulus;1.68427439579317e-24!GO:0012505;endomembrane system;1.84028181009302e-24!GO:0006119;oxidative phosphorylation;1.82833379814089e-23!GO:0051641;cellular localization;3.41186215917701e-23!GO:0051649;establishment of cellular localization;3.41186215917701e-23!GO:0005694;chromosome;9.08175474225907e-23!GO:0044451;nucleoplasm part;1.67181930434058e-22!GO:0006281;DNA repair;4.78949554459462e-21!GO:0022403;cell cycle phase;6.49593692637733e-21!GO:0044455;mitochondrial membrane part;1.53829394206301e-20!GO:0003676;nucleic acid binding;2.24549594838055e-20!GO:0015935;small ribosomal subunit;2.25347670840068e-20!GO:0005783;endoplasmic reticulum;2.92382789166563e-20!GO:0044427;chromosomal part;3.63338006604333e-20!GO:0044445;cytosolic part;6.28953647372292e-20!GO:0051301;cell division;6.73651836145784e-20!GO:0016462;pyrophosphatase activity;7.36918354136991e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.98891842401725e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.29659472472918e-19!GO:0044248;cellular catabolic process;1.60777112630502e-19!GO:0016874;ligase activity;1.84097681536466e-19!GO:0000087;M phase of mitotic cell cycle;1.84100141333917e-19!GO:0005730;nucleolus;2.16663151298104e-19!GO:0017111;nucleoside-triphosphatase activity;2.30706199083229e-19!GO:0015934;large ribosomal subunit;2.7564080484453e-19!GO:0009719;response to endogenous stimulus;2.96403889297555e-19!GO:0022618;protein-RNA complex assembly;3.22169968041011e-19!GO:0044265;cellular macromolecule catabolic process;3.34538348402304e-19!GO:0007067;mitosis;3.40490292210747e-19!GO:0051186;cofactor metabolic process;6.92372195951321e-19!GO:0032553;ribonucleotide binding;1.92440367815259e-18!GO:0032555;purine ribonucleotide binding;1.92440367815259e-18!GO:0017076;purine nucleotide binding;2.56952055712429e-18!GO:0006457;protein folding;4.77423345473478e-18!GO:0044432;endoplasmic reticulum part;8.20199960293555e-18!GO:0005746;mitochondrial respiratory chain;3.14145978288501e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.67534967469579e-17!GO:0000279;M phase;3.80262695029368e-17!GO:0005761;mitochondrial ribosome;4.02369344385337e-17!GO:0000313;organellar ribosome;4.02369344385337e-17!GO:0051276;chromosome organization and biogenesis;5.26193806829162e-17!GO:0009057;macromolecule catabolic process;9.23428203084524e-17!GO:0043285;biopolymer catabolic process;1.17750533598673e-16!GO:0031965;nuclear membrane;1.25656452913325e-16!GO:0005524;ATP binding;1.89490719892203e-16!GO:0032559;adenyl ribonucleotide binding;2.11642818221286e-16!GO:0048770;pigment granule;2.99502599366182e-16!GO:0042470;melanosome;2.99502599366182e-16!GO:0006732;coenzyme metabolic process;3.96219719977048e-16!GO:0030554;adenyl nucleotide binding;4.16292740530134e-16!GO:0005635;nuclear envelope;4.78758244556153e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.92238080611265e-16!GO:0003954;NADH dehydrogenase activity;4.92238080611265e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.92238080611265e-16!GO:0006512;ubiquitin cycle;5.1846709344814e-16!GO:0044453;nuclear membrane part;5.73863954283792e-16!GO:0042254;ribosome biogenesis and assembly;7.61838524207813e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;9.0222900126479e-16!GO:0006260;DNA replication;1.18973949162028e-15!GO:0044257;cellular protein catabolic process;1.31106742750641e-15!GO:0008135;translation factor activity, nucleic acid binding;1.50907494920841e-15!GO:0042623;ATPase activity, coupled;1.80131967814796e-15!GO:0019941;modification-dependent protein catabolic process;1.96635767875771e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.96635767875771e-15!GO:0016887;ATPase activity;2.91888210804588e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.13555228795936e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.74548868061285e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.74548868061285e-15!GO:0000375;RNA splicing, via transesterification reactions;7.74548868061285e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.74548868061285e-15!GO:0006605;protein targeting;2.34721052623489e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.50520903639643e-14!GO:0042773;ATP synthesis coupled electron transport;2.50520903639643e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.07987845902865e-14!GO:0045271;respiratory chain complex I;5.07987845902865e-14!GO:0005747;mitochondrial respiratory chain complex I;5.07987845902865e-14!GO:0030163;protein catabolic process;5.67819316976525e-14!GO:0005794;Golgi apparatus;5.85844432762278e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.96379414445161e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.53646715298921e-14!GO:0005643;nuclear pore;9.85426390346704e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.09536710742025e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.25578274928573e-13!GO:0005789;endoplasmic reticulum membrane;1.31098080115091e-13!GO:0009056;catabolic process;1.35339904551711e-13!GO:0016070;RNA metabolic process;2.00354438342212e-13!GO:0051082;unfolded protein binding;2.87422551679178e-13!GO:0008134;transcription factor binding;3.14655301901233e-13!GO:0016604;nuclear body;4.01205980213215e-13!GO:0016192;vesicle-mediated transport;5.959598605165e-13!GO:0050657;nucleic acid transport;6.32641499978938e-13!GO:0051236;establishment of RNA localization;6.32641499978938e-13!GO:0050658;RNA transport;6.32641499978938e-13!GO:0006403;RNA localization;7.07096845513744e-13!GO:0065002;intracellular protein transport across a membrane;8.72840700890221e-13!GO:0048193;Golgi vesicle transport;9.30183122372933e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.42500342425495e-12!GO:0006399;tRNA metabolic process;1.79946587639365e-12!GO:0004386;helicase activity;1.98637926360918e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.10003855039034e-12!GO:0043412;biopolymer modification;2.59246252854855e-12!GO:0009055;electron carrier activity;4.55105767881346e-12!GO:0006323;DNA packaging;5.5740443933814e-12!GO:0008565;protein transporter activity;7.29148098710918e-12!GO:0006413;translational initiation;7.51875585135313e-12!GO:0006461;protein complex assembly;8.96605314522582e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.044923130331e-11!GO:0003743;translation initiation factor activity;1.06580959356364e-11!GO:0046930;pore complex;1.60314790686148e-11!GO:0051726;regulation of cell cycle;2.06128513874674e-11!GO:0000074;regulation of progression through cell cycle;3.19398552155767e-11!GO:0006446;regulation of translational initiation;5.35470177124006e-11!GO:0051028;mRNA transport;7.4410853077362e-11!GO:0016607;nuclear speck;7.80027525553028e-11!GO:0006364;rRNA processing;1.0289739949013e-10!GO:0008026;ATP-dependent helicase activity;1.45216831521546e-10!GO:0016072;rRNA metabolic process;1.86835210241614e-10!GO:0000785;chromatin;1.96543513508462e-10!GO:0006913;nucleocytoplasmic transport;2.18247865603228e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.97611943277951e-10!GO:0006464;protein modification process;3.3265693898463e-10!GO:0009259;ribonucleotide metabolic process;4.11768643630771e-10!GO:0051169;nuclear transport;4.3808137928635e-10!GO:0051188;cofactor biosynthetic process;5.34521301466281e-10!GO:0006163;purine nucleotide metabolic process;1.16017986208694e-09!GO:0005793;ER-Golgi intermediate compartment;1.20873214996162e-09!GO:0006333;chromatin assembly or disassembly;2.59880201064538e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.95970245021716e-09!GO:0009060;aerobic respiration;3.02287203907679e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.25109785585019e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.81338381337163e-09!GO:0051329;interphase of mitotic cell cycle;5.88192144428509e-09!GO:0065004;protein-DNA complex assembly;5.8821964932213e-09!GO:0016491;oxidoreductase activity;6.34327618751754e-09!GO:0000775;chromosome, pericentric region;6.3944583985684e-09!GO:0016779;nucleotidyltransferase activity;7.32377388521591e-09!GO:0006164;purine nucleotide biosynthetic process;7.578180415238e-09!GO:0009150;purine ribonucleotide metabolic process;8.29020072194009e-09!GO:0043687;post-translational protein modification;8.29020072194009e-09!GO:0016787;hydrolase activity;8.53396726389865e-09!GO:0016740;transferase activity;9.63623399465777e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.08412070884804e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.08412070884804e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.08412070884804e-08!GO:0009260;ribonucleotide biosynthetic process;1.19642806034913e-08!GO:0008639;small protein conjugating enzyme activity;1.29922091410281e-08!GO:0009108;coenzyme biosynthetic process;1.31877705310834e-08!GO:0006261;DNA-dependent DNA replication;1.43272292930809e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.56760635084613e-08!GO:0043038;amino acid activation;1.7389538284933e-08!GO:0006418;tRNA aminoacylation for protein translation;1.7389538284933e-08!GO:0043039;tRNA aminoacylation;1.7389538284933e-08!GO:0015986;ATP synthesis coupled proton transport;1.7998089604963e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.7998089604963e-08!GO:0019787;small conjugating protein ligase activity;2.08278692324222e-08!GO:0004842;ubiquitin-protein ligase activity;2.39298722400161e-08!GO:0045333;cellular respiration;3.1475720889213e-08!GO:0019829;cation-transporting ATPase activity;4.00350684008801e-08!GO:0051325;interphase;4.45029895351141e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.62602567272477e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.17143522260201e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.6576800718788e-08!GO:0009141;nucleoside triphosphate metabolic process;6.48365290074188e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.51000722079087e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.51000722079087e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.78140716602625e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.78140716602625e-08!GO:0017038;protein import;1.11962576106747e-07!GO:0015630;microtubule cytoskeleton;1.20964045893308e-07!GO:0003712;transcription cofactor activity;1.25243970352277e-07!GO:0006099;tricarboxylic acid cycle;1.36779916912494e-07!GO:0046356;acetyl-CoA catabolic process;1.36779916912494e-07!GO:0006084;acetyl-CoA metabolic process;1.37495246669357e-07!GO:0046034;ATP metabolic process;1.46765038969039e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.58341750790655e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.58341750790655e-07!GO:0005819;spindle;1.65736892398639e-07!GO:0016853;isomerase activity;1.82946091092332e-07!GO:0006915;apoptosis;1.8760321959928e-07!GO:0006366;transcription from RNA polymerase II promoter;1.96258012862004e-07!GO:0012501;programmed cell death;2.04787947575006e-07!GO:0043623;cellular protein complex assembly;2.08259583877481e-07!GO:0006754;ATP biosynthetic process;2.26072885672931e-07!GO:0006753;nucleoside phosphate metabolic process;2.26072885672931e-07!GO:0016881;acid-amino acid ligase activity;2.40330798405987e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.50134924946693e-07!GO:0007051;spindle organization and biogenesis;3.11551030333903e-07!GO:0048475;coated membrane;3.22655003081559e-07!GO:0030117;membrane coat;3.22655003081559e-07!GO:0016568;chromatin modification;3.27012001833319e-07!GO:0000245;spliceosome assembly;3.50154799723215e-07!GO:0009117;nucleotide metabolic process;3.53032695674671e-07!GO:0006752;group transfer coenzyme metabolic process;4.65867225127394e-07!GO:0031988;membrane-bound vesicle;4.99445205647165e-07!GO:0005768;endosome;5.01750227260983e-07!GO:0031982;vesicle;5.41701554773601e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.75965404136623e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.92263970331361e-07!GO:0032446;protein modification by small protein conjugation;8.14320860939462e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.92917576033274e-07!GO:0043566;structure-specific DNA binding;8.94727261722661e-07!GO:0031410;cytoplasmic vesicle;9.17697872228274e-07!GO:0008219;cell death;9.3812437074862e-07!GO:0016265;death;9.3812437074862e-07!GO:0005657;replication fork;1.21577491089992e-06!GO:0007005;mitochondrion organization and biogenesis;1.2277768640365e-06!GO:0003697;single-stranded DNA binding;1.34671390076413e-06!GO:0005813;centrosome;1.39423483237374e-06!GO:0031497;chromatin assembly;1.45246045595785e-06!GO:0030120;vesicle coat;1.53190958220077e-06!GO:0030662;coated vesicle membrane;1.53190958220077e-06!GO:0045259;proton-transporting ATP synthase complex;1.53190958220077e-06!GO:0016567;protein ubiquitination;1.63779633767831e-06!GO:0051187;cofactor catabolic process;1.65156995196015e-06!GO:0009109;coenzyme catabolic process;1.68284335531228e-06!GO:0005815;microtubule organizing center;1.76591617841313e-06!GO:0006334;nucleosome assembly;2.11258167949793e-06!GO:0019752;carboxylic acid metabolic process;2.24516565573802e-06!GO:0006082;organic acid metabolic process;2.43775040197564e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.74213369096244e-06!GO:0005762;mitochondrial large ribosomal subunit;3.03200670521959e-06!GO:0000315;organellar large ribosomal subunit;3.03200670521959e-06!GO:0008654;phospholipid biosynthetic process;3.28394518599935e-06!GO:0003899;DNA-directed RNA polymerase activity;3.39139155369686e-06!GO:0008094;DNA-dependent ATPase activity;3.46488451755273e-06!GO:0000075;cell cycle checkpoint;3.6111749438623e-06!GO:0006613;cotranslational protein targeting to membrane;3.81593942150712e-06!GO:0003724;RNA helicase activity;4.50379913331687e-06!GO:0005667;transcription factor complex;4.92272736403429e-06!GO:0005773;vacuole;6.76936645702952e-06!GO:0050662;coenzyme binding;7.44531911341167e-06!GO:0051246;regulation of protein metabolic process;8.60121012270365e-06!GO:0044431;Golgi apparatus part;9.04466657428535e-06!GO:0006793;phosphorus metabolic process;1.01279678503984e-05!GO:0006796;phosphate metabolic process;1.01279678503984e-05!GO:0048037;cofactor binding;1.2263055355611e-05!GO:0006302;double-strand break repair;1.35198011794752e-05!GO:0051168;nuclear export;1.4827685246874e-05!GO:0042981;regulation of apoptosis;1.92105901032901e-05!GO:0051427;hormone receptor binding;2.04407783520933e-05!GO:0016126;sterol biosynthetic process;2.07114308611525e-05!GO:0000314;organellar small ribosomal subunit;2.07114308611525e-05!GO:0005763;mitochondrial small ribosomal subunit;2.07114308611525e-05!GO:0005788;endoplasmic reticulum lumen;2.44020896671852e-05!GO:0007059;chromosome segregation;2.59305771717454e-05!GO:0043021;ribonucleoprotein binding;2.59817469359313e-05!GO:0043067;regulation of programmed cell death;2.97600755033604e-05!GO:0000151;ubiquitin ligase complex;3.00102953500538e-05!GO:0000776;kinetochore;3.13641635494274e-05!GO:0044440;endosomal part;3.68923928380024e-05!GO:0010008;endosome membrane;3.68923928380024e-05!GO:0005798;Golgi-associated vesicle;4.16905077302286e-05!GO:0051170;nuclear import;4.17335226027539e-05!GO:0006091;generation of precursor metabolites and energy;4.18258274482764e-05!GO:0035257;nuclear hormone receptor binding;4.38368767111104e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.39972678824919e-05!GO:0008033;tRNA processing;4.45298205864998e-05!GO:0007010;cytoskeleton organization and biogenesis;4.4642374963906e-05!GO:0008610;lipid biosynthetic process;4.70379607101543e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.71014912220579e-05!GO:0000323;lytic vacuole;4.81223243131728e-05!GO:0005764;lysosome;4.81223243131728e-05!GO:0006695;cholesterol biosynthetic process;4.81223243131728e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.11206222233462e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.47642920344294e-05!GO:0015399;primary active transmembrane transporter activity;6.47642920344294e-05!GO:0016310;phosphorylation;6.69934831030097e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.10939995275178e-05!GO:0031252;leading edge;8.04344817425502e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.39181567543509e-05!GO:0003713;transcription coactivator activity;9.12390216529397e-05!GO:0016363;nuclear matrix;9.65187834044544e-05!GO:0006520;amino acid metabolic process;0.00010631178528102!GO:0005770;late endosome;0.000109210902014978!GO:0044452;nucleolar part;0.00010939776492078!GO:0043681;protein import into mitochondrion;0.000112862855169366!GO:0045454;cell redox homeostasis;0.00011553025048116!GO:0006626;protein targeting to mitochondrion;0.000118920600481112!GO:0006606;protein import into nucleus;0.0001249705093194!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000141709488046439!GO:0006402;mRNA catabolic process;0.000167254825874864!GO:0005525;GTP binding;0.000171182449159348!GO:0004298;threonine endopeptidase activity;0.000190643000816912!GO:0009165;nucleotide biosynthetic process;0.000201611062967448!GO:0008186;RNA-dependent ATPase activity;0.000202153082679033!GO:0016859;cis-trans isomerase activity;0.000205617970603769!GO:0030867;rough endoplasmic reticulum membrane;0.000205861161384311!GO:0051052;regulation of DNA metabolic process;0.000245830673489436!GO:0005048;signal sequence binding;0.000248161451445741!GO:0016563;transcription activator activity;0.000251460191763793!GO:0019899;enzyme binding;0.000257471859237714!GO:0045786;negative regulation of progression through cell cycle;0.000268984573100182!GO:0044255;cellular lipid metabolic process;0.000268984573100182!GO:0048523;negative regulation of cellular process;0.000272960340862826!GO:0032508;DNA duplex unwinding;0.000273812459858709!GO:0032392;DNA geometric change;0.000273812459858709!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000278075339637722!GO:0000059;protein import into nucleus, docking;0.000278491925595829!GO:0003690;double-stranded DNA binding;0.000301009578273935!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000312967253273509!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00031590773251248!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000327126448332372!GO:0003682;chromatin binding;0.000327870593654511!GO:0006401;RNA catabolic process;0.000337188633285689!GO:0008168;methyltransferase activity;0.000353902943553663!GO:0016741;transferase activity, transferring one-carbon groups;0.000353902943553663!GO:0000786;nucleosome;0.000357640558489195!GO:0051789;response to protein stimulus;0.00036499121324246!GO:0006986;response to unfolded protein;0.00036499121324246!GO:0003678;DNA helicase activity;0.000411857281569755!GO:0030036;actin cytoskeleton organization and biogenesis;0.000428604670841412!GO:0048471;perinuclear region of cytoplasm;0.000452488267778645!GO:0006612;protein targeting to membrane;0.000452488267778645!GO:0043069;negative regulation of programmed cell death;0.00047687240210154!GO:0000139;Golgi membrane;0.000494741057285065!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000524039318483856!GO:0016044;membrane organization and biogenesis;0.000556224394472901!GO:0007017;microtubule-based process;0.000559074658348851!GO:0005769;early endosome;0.000572576691673965!GO:0051252;regulation of RNA metabolic process;0.000577352155160659!GO:0004004;ATP-dependent RNA helicase activity;0.000577352155160659!GO:0043066;negative regulation of apoptosis;0.000586444239027403!GO:0046474;glycerophospholipid biosynthetic process;0.000597806461841153!GO:0005885;Arp2/3 protein complex;0.000610943760293999!GO:0007052;mitotic spindle organization and biogenesis;0.000610943760293999!GO:0046483;heterocycle metabolic process;0.00061622194537948!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00061622194537948!GO:0051287;NAD binding;0.00061879896478702!GO:0000082;G1/S transition of mitotic cell cycle;0.000628304856023661!GO:0051920;peroxiredoxin activity;0.000644560299103628!GO:0006519;amino acid and derivative metabolic process;0.000671977587340858!GO:0030118;clathrin coat;0.000676860673529815!GO:0006405;RNA export from nucleus;0.000691449095605328!GO:0006414;translational elongation;0.000728811544160126!GO:0006839;mitochondrial transport;0.000771228911913872!GO:0006268;DNA unwinding during replication;0.000774335833602249!GO:0008022;protein C-terminus binding;0.000785929702286979!GO:0042802;identical protein binding;0.000791068502368856!GO:0015992;proton transport;0.00079405276870881!GO:0033116;ER-Golgi intermediate compartment membrane;0.000794488145199214!GO:0007088;regulation of mitosis;0.000801025776175574!GO:0006818;hydrogen transport;0.000818010447054318!GO:0015980;energy derivation by oxidation of organic compounds;0.000833664557504812!GO:0005684;U2-dependent spliceosome;0.000833664557504812!GO:0043492;ATPase activity, coupled to movement of substances;0.000891553327493846!GO:0031968;organelle outer membrane;0.000940269290269747!GO:0003729;mRNA binding;0.000986258308859159!GO:0006629;lipid metabolic process;0.00099995397001972!GO:0044262;cellular carbohydrate metabolic process;0.00101498699276007!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0010277534782069!GO:0006807;nitrogen compound metabolic process;0.00103993903099635!GO:0006950;response to stress;0.0010526385297499!GO:0003684;damaged DNA binding;0.00110421273120194!GO:0030133;transport vesicle;0.00112191417301888!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00113141849885313!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00113141849885313!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00113141849885313!GO:0005905;coated pit;0.00114562982152878!GO:0048500;signal recognition particle;0.00120591157903828!GO:0016408;C-acyltransferase activity;0.00124818621478933!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00126729793239484!GO:0005791;rough endoplasmic reticulum;0.00130298481107236!GO:0003924;GTPase activity;0.00131152256186303!GO:0009308;amine metabolic process;0.00133035880517926!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00139771713656831!GO:0005637;nuclear inner membrane;0.001414940491803!GO:0030119;AP-type membrane coat adaptor complex;0.00146637003045709!GO:0000922;spindle pole;0.00147276559040829!GO:0032561;guanyl ribonucleotide binding;0.00149238831130371!GO:0019001;guanyl nucleotide binding;0.00149238831130371!GO:0007093;mitotic cell cycle checkpoint;0.0015180268919684!GO:0030029;actin filament-based process;0.00154164919696882!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00155810012984647!GO:0006310;DNA recombination;0.00156246035684994!GO:0031324;negative regulation of cellular metabolic process;0.00156582502189325!GO:0019843;rRNA binding;0.00156702269294616!GO:0019867;outer membrane;0.0015996207881806!GO:0046467;membrane lipid biosynthetic process;0.0016147206543002!GO:0016125;sterol metabolic process;0.00162825890626604!GO:0006979;response to oxidative stress;0.00165014348804591!GO:0000049;tRNA binding;0.00166740021486206!GO:0006916;anti-apoptosis;0.00173357585527239!GO:0006767;water-soluble vitamin metabolic process;0.00181052753226904!GO:0007264;small GTPase mediated signal transduction;0.00187375883086111!GO:0031124;mRNA 3'-end processing;0.00188266977545065!GO:0030880;RNA polymerase complex;0.00210096483858574!GO:0016272;prefoldin complex;0.00218177512261193!GO:0006891;intra-Golgi vesicle-mediated transport;0.00220316291648743!GO:0005874;microtubule;0.00228903264555524!GO:0050794;regulation of cellular process;0.00240669059717706!GO:0030659;cytoplasmic vesicle membrane;0.00240669059717706!GO:0004527;exonuclease activity;0.00241943944729135!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00243894353692514!GO:0030658;transport vesicle membrane;0.00244639558809533!GO:0046983;protein dimerization activity;0.00246532735730219!GO:0006338;chromatin remodeling;0.00249286867651822!GO:0008312;7S RNA binding;0.00250427153678819!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00251937706489655!GO:0005876;spindle microtubule;0.00252995271813196!GO:0005741;mitochondrial outer membrane;0.00253084817387822!GO:0030131;clathrin adaptor complex;0.00255637235493653!GO:0051539;4 iron, 4 sulfur cluster binding;0.00257764216219318!GO:0006595;polyamine metabolic process;0.00275103699777464!GO:0000819;sister chromatid segregation;0.00277586186895841!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00277928433880974!GO:0045047;protein targeting to ER;0.00277928433880974!GO:0006352;transcription initiation;0.00281524201955293!GO:0065009;regulation of a molecular function;0.0028596889252629!GO:0022890;inorganic cation transmembrane transporter activity;0.00299779527407149!GO:0009112;nucleobase metabolic process;0.00307828428291457!GO:0043488;regulation of mRNA stability;0.00307880104553627!GO:0043487;regulation of RNA stability;0.00307880104553627!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00307880104553627!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00307880104553627!GO:0000070;mitotic sister chromatid segregation;0.00309777467851952!GO:0009892;negative regulation of metabolic process;0.00316861020270007!GO:0016564;transcription repressor activity;0.00345300875848445!GO:0008092;cytoskeletal protein binding;0.00349588977573304!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00357107402516276!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00377799044839396!GO:0046489;phosphoinositide biosynthetic process;0.00389090615631438!GO:0048519;negative regulation of biological process;0.00406885326537073!GO:0004518;nuclease activity;0.0042129476299578!GO:0044433;cytoplasmic vesicle part;0.00421563076627639!GO:0042393;histone binding;0.00421563076627639!GO:0003714;transcription corepressor activity;0.00421708719536547!GO:0030521;androgen receptor signaling pathway;0.00421708719536547!GO:0000228;nuclear chromosome;0.00440069841572421!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00440069841572421!GO:0000428;DNA-directed RNA polymerase complex;0.00440069841572421!GO:0048487;beta-tubulin binding;0.0044323991487459!GO:0006275;regulation of DNA replication;0.00446533106988415!GO:0030176;integral to endoplasmic reticulum membrane;0.00450356628864755!GO:0005758;mitochondrial intermembrane space;0.00451521577047393!GO:0006383;transcription from RNA polymerase III promoter;0.00481820390638857!GO:0043624;cellular protein complex disassembly;0.004839629309778!GO:0012506;vesicle membrane;0.00492222498812468!GO:0006270;DNA replication initiation;0.00512784661306922!GO:0032259;methylation;0.00551115309778442!GO:0001726;ruffle;0.00551246600770214!GO:0051087;chaperone binding;0.00552935112545055!GO:0006611;protein export from nucleus;0.00558652496245308!GO:0009451;RNA modification;0.00560683510502636!GO:0031123;RNA 3'-end processing;0.00568688459717389!GO:0043022;ribosome binding;0.0057365667698354!GO:0008139;nuclear localization sequence binding;0.0057494633403535!GO:0030660;Golgi-associated vesicle membrane;0.00579085940256191!GO:0031072;heat shock protein binding;0.00579085940256191!GO:0035258;steroid hormone receptor binding;0.006131819667639!GO:0006643;membrane lipid metabolic process;0.00653590327704236!GO:0030134;ER to Golgi transport vesicle;0.00656036361430688!GO:0003746;translation elongation factor activity;0.00659247588869342!GO:0006650;glycerophospholipid metabolic process;0.00670447936176559!GO:0000086;G2/M transition of mitotic cell cycle;0.00689546803714922!GO:0006769;nicotinamide metabolic process;0.00701372425504945!GO:0006144;purine base metabolic process;0.00712399146829179!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00712399146829179!GO:0015002;heme-copper terminal oxidase activity;0.00712399146829179!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00712399146829179!GO:0004129;cytochrome-c oxidase activity;0.00712399146829179!GO:0008652;amino acid biosynthetic process;0.00734058864972463!GO:0006066;alcohol metabolic process;0.00743834914562747!GO:0007021;tubulin folding;0.00743834914562747!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00745964907441335!GO:0016584;nucleosome positioning;0.00746980021328531!GO:0005777;peroxisome;0.00772694504943833!GO:0042579;microbody;0.00772694504943833!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0079462995726574!GO:0009116;nucleoside metabolic process;0.00796814086178006!GO:0030663;COPI coated vesicle membrane;0.00827732664913391!GO:0030126;COPI vesicle coat;0.00827732664913391!GO:0005832;chaperonin-containing T-complex;0.00841086357176827!GO:0032984;macromolecular complex disassembly;0.00841956007258646!GO:0043596;nuclear replication fork;0.00845428731290878!GO:0043414;biopolymer methylation;0.00856014425022461!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00920470514596167!GO:0016251;general RNA polymerase II transcription factor activity;0.00931789196696475!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00946295148525046!GO:0000725;recombinational repair;0.00950255315901495!GO:0000724;double-strand break repair via homologous recombination;0.00950255315901495!GO:0004576;oligosaccharyl transferase activity;0.00950566780261156!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00956113873791966!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0098114786384728!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0100110505422688!GO:0006378;mRNA polyadenylation;0.0100540219770224!GO:0009303;rRNA transcription;0.0101225798168922!GO:0051017;actin filament bundle formation;0.010188731727359!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0102022380836961!GO:0004177;aminopeptidase activity;0.0105529985057263!GO:0031970;organelle envelope lumen;0.0106666000223926!GO:0040029;regulation of gene expression, epigenetic;0.0108236567544678!GO:0006007;glucose catabolic process;0.0108578047175837!GO:0031570;DNA integrity checkpoint;0.0110377213284485!GO:0030127;COPII vesicle coat;0.0111051630793733!GO:0012507;ER to Golgi transport vesicle membrane;0.0111051630793733!GO:0006672;ceramide metabolic process;0.0116330167023574!GO:0008203;cholesterol metabolic process;0.0116439280649962!GO:0000793;condensed chromosome;0.0117335553323409!GO:0051540;metal cluster binding;0.011824202129669!GO:0051536;iron-sulfur cluster binding;0.011824202129669!GO:0046128;purine ribonucleoside metabolic process;0.0122658559924527!GO:0042278;purine nucleoside metabolic process;0.0122658559924527!GO:0000178;exosome (RNase complex);0.0124189101986317!GO:0008234;cysteine-type peptidase activity;0.0124610832577146!GO:0007006;mitochondrial membrane organization and biogenesis;0.0127226371867347!GO:0046966;thyroid hormone receptor binding;0.0128058082459451!GO:0051053;negative regulation of DNA metabolic process;0.0131555916261275!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0134807200355304!GO:0006733;oxidoreduction coenzyme metabolic process;0.013732206870758!GO:0007040;lysosome organization and biogenesis;0.0137480175288049!GO:0000209;protein polyubiquitination;0.0142803618427316!GO:0008408;3'-5' exonuclease activity;0.0143210218719405!GO:0000096;sulfur amino acid metabolic process;0.014710729314593!GO:0030137;COPI-coated vesicle;0.0147813859034212!GO:0015631;tubulin binding;0.0147813859034212!GO:0043241;protein complex disassembly;0.0147830844189204!GO:0046519;sphingoid metabolic process;0.0149001786743638!GO:0006596;polyamine biosynthetic process;0.0150881695170719!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0154227653797696!GO:0007015;actin filament organization;0.0155449842188536!GO:0008250;oligosaccharyl transferase complex;0.0158916168139446!GO:0009081;branched chain family amino acid metabolic process;0.0159741850242886!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0161060334906998!GO:0030027;lamellipodium;0.0163976196799497!GO:0004003;ATP-dependent DNA helicase activity;0.01651669952359!GO:0008180;signalosome;0.0165288333327938!GO:0016197;endosome transport;0.0166876402375905!GO:0000726;non-recombinational repair;0.0169101681287939!GO:0006739;NADP metabolic process;0.0171214981843111!GO:0043601;nuclear replisome;0.0175005002056748!GO:0030894;replisome;0.0175005002056748!GO:0016407;acetyltransferase activity;0.0179381097935823!GO:0005975;carbohydrate metabolic process;0.0179477782408451!GO:0044438;microbody part;0.0182097350076027!GO:0044439;peroxisomal part;0.0182097350076027!GO:0042770;DNA damage response, signal transduction;0.0182948604076478!GO:0004532;exoribonuclease activity;0.0187458352660345!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0187458352660345!GO:0033673;negative regulation of kinase activity;0.0187458352660345!GO:0006469;negative regulation of protein kinase activity;0.0187458352660345!GO:0006417;regulation of translation;0.0188970256401917!GO:0008299;isoprenoid biosynthetic process;0.019088810671013!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0192969862022087!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0194073109753548!GO:0030132;clathrin coat of coated pit;0.0195450922339686!GO:0006284;base-excision repair;0.0196644251723223!GO:0043433;negative regulation of transcription factor activity;0.0200307697880497!GO:0004185;serine carboxypeptidase activity;0.0200583461736468!GO:0008632;apoptotic program;0.0202241155676656!GO:0003711;transcription elongation regulator activity;0.0205255084862387!GO:0000339;RNA cap binding;0.0214744410041149!GO:0009119;ribonucleoside metabolic process;0.0216042212237604!GO:0046365;monosaccharide catabolic process;0.0218921913770759!GO:0006400;tRNA modification;0.0221673248736544!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0223431254297205!GO:0031529;ruffle organization and biogenesis;0.0223500534198722!GO:0008538;proteasome activator activity;0.0225579314780857!GO:0043284;biopolymer biosynthetic process;0.0226152646724119!GO:0045045;secretory pathway;0.0230942462630702!GO:0006289;nucleotide-excision repair;0.0233195084523287!GO:0008286;insulin receptor signaling pathway;0.0233781854053832!GO:0051348;negative regulation of transferase activity;0.0235428123927263!GO:0031903;microbody membrane;0.0235428123927263!GO:0005778;peroxisomal membrane;0.0235428123927263!GO:0006730;one-carbon compound metabolic process;0.0235594213007333!GO:0043189;H4/H2A histone acetyltransferase complex;0.0236965860337933!GO:0006749;glutathione metabolic process;0.0241883159382435!GO:0006220;pyrimidine nucleotide metabolic process;0.0246562177851241!GO:0006644;phospholipid metabolic process;0.0249351734706651!GO:0004674;protein serine/threonine kinase activity;0.0249524260374995!GO:0006376;mRNA splice site selection;0.0249544952450282!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0249544952450282!GO:0003756;protein disulfide isomerase activity;0.0249901402927726!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0249901402927726!GO:0000152;nuclear ubiquitin ligase complex;0.0255134888355073!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0256754268444144!GO:0005996;monosaccharide metabolic process;0.0259419066079374!GO:0004300;enoyl-CoA hydratase activity;0.0260234299034682!GO:0030125;clathrin vesicle coat;0.0260234299034682!GO:0030665;clathrin coated vesicle membrane;0.0260234299034682!GO:0030139;endocytic vesicle;0.0260937233918447!GO:0017166;vinculin binding;0.0261211394107803!GO:0006897;endocytosis;0.0261211394107803!GO:0010324;membrane invagination;0.0261211394107803!GO:0030149;sphingolipid catabolic process;0.0261998876072386!GO:0043174;nucleoside salvage;0.0263407543562088!GO:0006166;purine ribonucleoside salvage;0.0263407543562088!GO:0043101;purine salvage;0.0263407543562088!GO:0045947;negative regulation of translational initiation;0.0265850537166874!GO:0016746;transferase activity, transferring acyl groups;0.0267004391910688!GO:0006406;mRNA export from nucleus;0.0268230209752284!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.026991214282643!GO:0005663;DNA replication factor C complex;0.0272239542566409!GO:0006541;glutamine metabolic process;0.0278256241859712!GO:0022884;macromolecule transmembrane transporter activity;0.0278256241859712!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0278256241859712!GO:0007033;vacuole organization and biogenesis;0.028449596702053!GO:0005784;translocon complex;0.0289403416024426!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0290838458063493!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0291479170164881!GO:0030518;steroid hormone receptor signaling pathway;0.0291840494229448!GO:0008415;acyltransferase activity;0.0291887961474856!GO:0001889;liver development;0.0291887961474856!GO:0031577;spindle checkpoint;0.0295575755916152!GO:0006266;DNA ligation;0.0298410808226985!GO:0003702;RNA polymerase II transcription factor activity;0.0303504287134055!GO:0001824;blastocyst development;0.0305099137820467!GO:0008320;protein transmembrane transporter activity;0.030588743105567!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0308859528815998!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0309960537405541!GO:0008156;negative regulation of DNA replication;0.0312050520790984!GO:0000792;heterochromatin;0.0312330397810684!GO:0019318;hexose metabolic process;0.031611349685483!GO:0046164;alcohol catabolic process;0.031826950049866!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0319840597577036!GO:0016860;intramolecular oxidoreductase activity;0.032248972193914!GO:0001701;in utero embryonic development;0.0323622356324181!GO:0000062;acyl-CoA binding;0.0323839608592572!GO:0006118;electron transport;0.0323839608592572!GO:0006360;transcription from RNA polymerase I promoter;0.0325184453768474!GO:0006506;GPI anchor biosynthetic process;0.0327659670107709!GO:0051656;establishment of organelle localization;0.0328372109378875!GO:0043130;ubiquitin binding;0.0329965996169939!GO:0032182;small conjugating protein binding;0.0329965996169939!GO:0032200;telomere organization and biogenesis;0.0333342404718968!GO:0000723;telomere maintenance;0.0333342404718968!GO:0044450;microtubule organizing center part;0.0333717103980889!GO:0044454;nuclear chromosome part;0.0333996667161453!GO:0042769;DNA damage response, detection of DNA damage;0.0338959738475557!GO:0019320;hexose catabolic process;0.0341301060461329!GO:0051640;organelle localization;0.0345960575618815!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0353457541098942!GO:0006740;NADPH regeneration;0.0355944246992662!GO:0006098;pentose-phosphate shunt;0.0355944246992662!GO:0031901;early endosome membrane;0.0359269695225022!GO:0000123;histone acetyltransferase complex;0.036563914381985!GO:0018196;peptidyl-asparagine modification;0.036563914381985!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.036563914381985!GO:0019362;pyridine nucleotide metabolic process;0.0365766496109917!GO:0007265;Ras protein signal transduction;0.036772235877291!GO:0006766;vitamin metabolic process;0.0372929533913174!GO:0000077;DNA damage checkpoint;0.0377442695065795!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0377442695065795!GO:0016791;phosphoric monoester hydrolase activity;0.038162018878161!GO:0008097;5S rRNA binding;0.0383435721929417!GO:0005774;vacuolar membrane;0.0384140491116442!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0384140491116442!GO:0001832;blastocyst growth;0.0389174519893883!GO:0050749;apolipoprotein E receptor binding;0.0392470691540533!GO:0031625;ubiquitin protein ligase binding;0.0393888981418499!GO:0035267;NuA4 histone acetyltransferase complex;0.0393888981418499!GO:0006892;post-Golgi vesicle-mediated transport;0.0393888981418499!GO:0001558;regulation of cell growth;0.0397060670328954!GO:0008536;Ran GTPase binding;0.0397060670328954!GO:0050790;regulation of catalytic activity;0.0397452496976822!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0408307228216731!GO:0055083;monovalent inorganic anion homeostasis;0.0408307228216731!GO:0055064;chloride ion homeostasis;0.0408307228216731!GO:0030644;cellular chloride ion homeostasis;0.0408307228216731!GO:0031371;ubiquitin conjugating enzyme complex;0.041232425317054!GO:0006301;postreplication repair;0.0421956746938777!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0430053941591081!GO:0045039;protein import into mitochondrial inner membrane;0.0430053941591081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0430796073771769!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0435619026662442!GO:0006379;mRNA cleavage;0.0443541278641201!GO:0007346;regulation of progression through mitotic cell cycle;0.0443571256997392!GO:0006778;porphyrin metabolic process;0.0443571256997392!GO:0033013;tetrapyrrole metabolic process;0.0443571256997392!GO:0004540;ribonuclease activity;0.0448913006829512!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0449138181347265!GO:0046912;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;0.0449138181347265!GO:0042026;protein refolding;0.0455872343102538!GO:0006505;GPI anchor metabolic process;0.0457000320745259!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0459314335049687!GO:0050681;androgen receptor binding;0.0460844369328068!GO:0043631;RNA polyadenylation;0.0460844369328068!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.046174237654935!GO:0046112;nucleobase biosynthetic process;0.0475264828040911!GO:0005869;dynactin complex;0.0476464613776119!GO:0030384;phosphoinositide metabolic process;0.0476464613776119!GO:0051098;regulation of binding;0.0483620388444893!GO:0050811;GABA receptor binding;0.0483620388444893!GO:0001725;stress fiber;0.0483620388444893!GO:0032432;actin filament bundle;0.0483620388444893!GO:0003923;GPI-anchor transamidase activity;0.0484180948847299!GO:0016255;attachment of GPI anchor to protein;0.0484180948847299!GO:0042765;GPI-anchor transamidase complex;0.0484180948847299!GO:0005652;nuclear lamina;0.0485947599686493!GO:0031902;late endosome membrane;0.0485947599686493!GO:0009066;aspartate family amino acid metabolic process;0.0485947599686493!GO:0008361;regulation of cell size;0.0491436063551794!GO:0045893;positive regulation of transcription, DNA-dependent;0.0496678549152388
|sample_id=10513
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=colon
|top_motifs=HNF1A:3.06583846818;HNF4A_NR2F1,2:2.91576677331;FOXA2:2.07747986817;SNAI1..3:2.06952913165;LEF1_TCF7_TCF7L1,2:1.79040010615;FOX{F1,F2,J1}:1.76022898379;ZEB1:1.74269718529;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.71615833627;NFY{A,B,C}:1.53570490242;E2F1..5:1.41837478945;LHX3,4:1.39993910202;bHLH_family:1.37849117682;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.35279380345;MYOD1:1.25296948779;VSX1,2:1.19991715544;ADNP_IRX_SIX_ZHX:1.16086015688;POU2F1..3:1.04862113891;EN1,2:1.01294232739;TEAD1:0.946914874683;GATA6:0.933321801619;ONECUT1,2:0.822216153487;HOXA9_MEIS1:0.810349558401;HOX{A6,A7,B6,B7}:0.806341855979;ELK1,4_GABP{A,B1}:0.785955332913;SOX{8,9,10}:0.778393844614;SP1:0.772638519403;FOXN1:0.747190812919;TFDP1:0.735156972237;RBPJ:0.733552919442;NKX2-3_NKX2-5:0.722950798524;ESRRA:0.673846886301;XCPE1{core}:0.638734371675;NRF1:0.638598655605;MYB:0.580210974631;ZNF143:0.52702785081;YY1:0.526564839922;TBP:0.523901240541;SOX17:0.478400170866;FOXD3:0.461767807247;PBX1:0.447052962324;TEF:0.43135347902;CRX:0.368269980302;HOX{A5,B5}:0.33621498131;FOXP1:0.31943607684;EVI1:0.318994598676;HLF:0.301832981378;STAT5{A,B}:0.29553786084;ATF4:0.28937184219;FOXQ1:0.283545256825;ZNF148:0.283313465046;OCT4_SOX2{dimer}:0.281472915695;GFI1:0.278520007206;NKX3-2:0.276982677615;FOX{D1,D2}:0.218186571626;ESR1:0.196674332859;RORA:0.190044711457;PDX1:0.168745318429;SREBF1,2:0.159471114464;ARID5B:0.146862548942;DBP:0.134570075321;PITX1..3:0.103947343251;POU5F1:0.100923595552;LMO2:0.0816737187448;HBP1_HMGB_SSRP1_UBTF:0.0750827049814;CUX2:0.0589530466885;PAX8:0.0470893103788;HES1:0.0320343613335;FOX{I1,J2}:0.023139587432;IKZF1:-0.000838371840211;SOX2:-0.0124426186078;FOXM1:-0.0180389661025;NFIX:-0.0254849628228;HAND1,2:-0.0473908801352;TBX4,5:-0.0580215476813;HIC1:-0.0795000754822;MED-1{core}:-0.0884420488624;BREu{core}:-0.0887145722463;POU1F1:-0.0995903458825;HSF1,2:-0.106521882606;POU3F1..4:-0.121769177157;T:-0.15834816474;SOX5:-0.159671534411;PAX3,7:-0.174077762011;MYBL2:-0.182885362853;AIRE:-0.188494900078;ZFP161:-0.19424315104;NFE2:-0.21920837458;IKZF2:-0.232634890621;ATF6:-0.235820115021;PAX1,9:-0.235932258128;SRF:-0.238276570919;FOS_FOS{B,L1}_JUN{B,D}:-0.238307048965;HMGA1,2:-0.23968986481;ELF1,2,4:-0.242980930748;DMAP1_NCOR{1,2}_SMARC:-0.252710507162;STAT2,4,6:-0.253014574581;KLF4:-0.25708806522;RXRA_VDR{dimer}:-0.263723509942;PATZ1:-0.265255366358;PAX2:-0.290065577341;ALX1:-0.303319456354;MAZ:-0.303750883749;NFKB1_REL_RELA:-0.304308666273;TFCP2:-0.312024409668;HOX{A4,D4}:-0.315573988383;ATF5_CREB3:-0.317186072434;NHLH1,2:-0.317730255363;MTE{core}:-0.330728976681;JUN:-0.332545457012;TOPORS:-0.345398426927;BACH2:-0.364829307322;FOXO1,3,4:-0.389148715716;NANOG:-0.39063632366;STAT1,3:-0.394875933164;MEF2{A,B,C,D}:-0.396208805636;CDC5L:-0.400313433754;FOSL2:-0.402394052307;NFE2L2:-0.427805920343;CEBPA,B_DDIT3:-0.430866404003;PAX4:-0.43895561375;NR5A1,2:-0.441369173532;ZIC1..3:-0.457562783779;ATF2:-0.467312088682;POU6F1:-0.473220234091;EBF1:-0.477092160349;RFX1:-0.489926261524;NKX6-1,2:-0.49511326058;UFEwm:-0.498576945403;NFIL3:-0.508014271276;GFI1B:-0.510640909799;RFX2..5_RFXANK_RFXAP:-0.51492023968;ZBTB16:-0.530357114263;TP53:-0.536415909868;PAX5:-0.541878918794;SPZ1:-0.565444814015;REST:-0.566817354689;FOXL1:-0.573785284739;ZBTB6:-0.576722014798;TFAP2B:-0.586709860995;SPIB:-0.605226339396;RXR{A,B,G}:-0.64395262702;CREB1:-0.644092666994;PRRX1,2:-0.645445996758;ZNF384:-0.653076534449;TFAP2{A,C}:-0.657273246429;SPI1:-0.669271244974;AHR_ARNT_ARNT2:-0.679373449813;ALX4:-0.70369868465;RUNX1..3:-0.715834867357;TAL1_TCF{3,4,12}:-0.750973940205;TLX2:-0.757789290895;MYFfamily:-0.771884401669;XBP1:-0.780131644357;TFAP4:-0.819664451107;FOXP3:-0.823749214052;IRF7:-0.825254762743;CDX1,2,4:-0.826842151699;HIF1A:-0.829998782668;EGR1..3:-0.831582359535;PPARG:-0.852619418576;GTF2I:-0.854320001692;PRDM1:-0.875886042068;ETS1,2:-0.876203211598;MZF1:-0.88344617097;GTF2A1,2:-0.901752020242;MAFB:-0.942836489082;ZNF238:-0.965698643315;NR3C1:-1.03927427606;AR:-1.04027615536;MTF1:-1.05433684735;IRF1,2:-1.08569890061;NKX2-2,8:-1.109011404;TGIF1:-1.11945307463;GCM1,2:-1.12727754882;NR6A1:-1.14848222075;BPTF:-1.15424910796;RREB1:-1.22041501536;NANOG{mouse}:-1.31240477302;NKX2-1,4:-1.35453760983;SMAD1..7,9:-1.42512335604;NFATC1..3:-1.43525157531;EP300:-1.44638139183;GZF1:-1.46331443646;TLX1..3_NFIC{dimer}:-1.48605272066;NFE2L1:-1.5218071268;NR1H4:-1.54041743461;ZNF423:-1.54191462268;PAX6:-1.5737320654;GLI1..3:-1.59383092941;GATA4:-1.60991088923;HMX1:-1.61379313342;NKX3-1:-1.83411500716
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10513-107D9;search_select_hide=table117:FF:10513-107D9
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:colon carcinoma cell line:CACO-2
Species:Human (Homo sapiens)
Library ID:CNhs11280
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecolon
dev stageNA
sexmale
age72
cell typeunclassifiable
cell lineCACO-2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005511
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11280 CAGE DRX007862 DRR008734
Accession ID Hg19

Library idBAMCTSS
CNhs11280 DRZ000159 DRZ001544
Accession ID Hg38

Library idBAMCTSS
CNhs11280 DRZ011509 DRZ012894
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.577
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0.0574
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.299
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0462
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0173
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.211
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.154
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0.837
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0.329
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.354
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.00733
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0.0574
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.537
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.167
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11280

Jaspar motifP-value
MA0002.20.00695
MA0003.10.508
MA0004.10.0137
MA0006.10.459
MA0007.10.956
MA0009.10.221
MA0014.10.00681
MA0017.12.56641e-12
MA0018.20.89
MA0019.10.639
MA0024.11.6392e-7
MA0025.10.711
MA0027.10.98
MA0028.10.00833
MA0029.12.9972e-4
MA0030.10.18
MA0031.10.0299
MA0035.29.01544e-7
MA0038.13.44608e-5
MA0039.28.54906e-4
MA0040.10.188
MA0041.10.21
MA0042.10.282
MA0043.10.552
MA0046.15.03016e-61
MA0047.20.00139
MA0048.10.993
MA0050.19.20479e-8
MA0051.10.0134
MA0052.10.0545
MA0055.10.00278
MA0057.10.708
MA0058.10.00286
MA0059.10.0817
MA0060.11.92436e-18
MA0061.16.9769e-5
MA0062.20.0321
MA0065.25.28678e-4
MA0066.10.184
MA0067.10.128
MA0068.10.205
MA0069.10.971
MA0070.10.788
MA0071.10.921
MA0072.10.0329
MA0073.10.6
MA0074.10.79
MA0076.10.0291
MA0077.10.315
MA0078.10.207
MA0079.20.626
MA0080.21.11366e-9
MA0081.10.051
MA0083.10.955
MA0084.10.808
MA0087.10.638
MA0088.10.257
MA0090.10.00341
MA0091.10.0475
MA0092.10.334
MA0093.10.01
MA0099.21.25571e-4
MA0100.10.163
MA0101.10.0183
MA0102.20.725
MA0103.11.15208e-6
MA0104.20.00571
MA0105.12.08005e-4
MA0106.10.295
MA0107.10.00129
MA0108.20.31
MA0111.10.979
MA0112.20.0798
MA0113.10.387
MA0114.13.34743e-17
MA0115.18.46311e-5
MA0116.10.0035
MA0117.10.923
MA0119.10.00115
MA0122.10.978
MA0124.10.467
MA0125.10.0105
MA0131.10.406
MA0135.10.584
MA0136.11.83072e-6
MA0137.20.139
MA0138.20.234
MA0139.10.206
MA0140.11.17482e-5
MA0141.10.622
MA0142.10.106
MA0143.10.381
MA0144.10.124
MA0145.10.201
MA0146.10.902
MA0147.10.0165
MA0148.18.4449e-4
MA0149.10.0987
MA0150.10.0116
MA0152.10.865
MA0153.19.93332e-48
MA0154.10.00537
MA0155.10.414
MA0156.17.36852e-4
MA0157.10.132
MA0159.10.784
MA0160.10.446
MA0162.10.578
MA0163.10.319
MA0164.10.0596
MA0258.10.195
MA0259.10.345



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11280

Novel motifP-value
10.667
100.533
1000.278
1010.635
1020.372
1030.892
1040.629
1050.777
1060.0788
1070.498
1080.636
1090.453
110.42
1100.402
1110.881
1120.102
1130.54
1140.289
1150.583
1160.327
1170.81
1180.478
1190.916
120.978
1200.796
1210.392
1220.121
1230.41
1240.287
1250.31
1260.55
1270.413
1280.0522
1290.979
130.00503
1300.0705
1310.165
1320.613
1330.0428
1340.455
1350.204
1360.00648
1370.0964
1380.0331
1390.0302
140.408
1400.741
1410.847
1420.723
1430.0983
1440.409
1450.508
1460.798
1470.512
1480.405
1490.641
150.729
1500.494
1510.208
1520.375
1530.594
1540.0989
1550.349
1560.616
1570.336
1580.363
1590.693
160.724
1600.328
1610.807
1620.956
1630.201
1640.303
1650.818
1660.0431
1670.812
1680.24
1690.488
170.791
180.0277
190.149
20.241
200.418
210.225
220.604
230.0224
240.622
250.886
260.992
270.337
280.876
290.702
30.427
300.654
310.712
320.0128
330.637
340.513
350.391
360.318
370.421
380.815
390.399
40.551
400.0343
410.0492
420.868
430.21
440.596
450.525
460.307
470.542
480.743
490.337
50.623
500.359
510.814
520.932
530.45
540.754
550.566
560.657
570.931
580.637
590.0616
60.84
600.373
610.319
620.25
630.553
640.667
650.0645
662.9958e-4
670.119
680.201
690.387
70.157
700.0944
710.494
720.578
730.604
740.166
750.692
760.947
770.214
780.00764
790.111
80.772
800.22
810.391
820.00826
830.651
840.483
850.0917
860.66
870.0819
880.991
890.0303
90.0469
900.778
910.00516
920.076
930.856
940.025
950.317
960.246
970.924
980.703
990.799



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11280


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002253 (epithelial cell of large intestine)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001052 (rectum)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101913 (colonic adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100797 (colonic cancer cell line)
0101532 (rectal cancer cell line sample)
0101914 (colorectal adenocarcinoma cell line sample)
0101616 (colorectal cancer cell line sample)
0100195 (CACO-2 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

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