FF:10513-107D9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005511 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007862;DRR008734;DRZ000159;DRZ001544;DRZ011509;DRZ012894 | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001052,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251,CL:0002253 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101913,FF:0101120,FF:0100167,FF:0100797,FF:0101532,FF:0101914,FF:0101616,FF:0100195 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120,FF:0101532 | |fonse_cell_line=FF:0101120,FF:0101532 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101532 | |fonse_cell_line_closure=FF:0101120,FF:0101532 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCACO-2.CNhs11280.10513-107D9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCACO-2.CNhs11280.10513-107D9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCACO-2.CNhs11280.10513-107D9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCACO-2.CNhs11280.10513-107D9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/colon%2520carcinoma%2520cell%2520line%253aCACO-2.CNhs11280.10513-107D9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10513-107D9 | |id=FF:10513-107D9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100195 | ||
|is_obsolete= | |||
|library_id=CNhs11280 | |||
|library_id_phase_based=2:CNhs11280 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10513 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10513 | |||
|name=colon carcinoma cell line:CACO-2 | |name=colon carcinoma cell line:CACO-2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11280,LSID759,release008,COMPLETED | |profile_hcage=CNhs11280,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.054063587287923,0,0,-0.160318030086386,0,-0.166706123630244,-0.253693554644764,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.13336489882113,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.107350148145183,0,0,0,0,0,0,0,0,0.78447974173552,0,0,0,0,0,-0.0550275548432519,0,-0.0969923612426051,0,0,0.134830192032343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00461434677482453,0.0287100059321783,0,0,0,0,0,-0.151801810789741,0,0,0,0.173726992433615,-0.105723372650539,0.0287100059321783,0,0,0,0.0100918233381396,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460848677027654,0,0,0,-0.113110753891573,-0.244613410590021,0,0,0,0,0,0 | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=35.5765 | |rna_weight_ug=35.5765 | ||
|sample_age=72 | |sample_age=72 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0988 | |sample_cell_catalog=RCB0988 | ||
|sample_cell_line=CACO-2 | |sample_cell_line=CACO-2 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.68958024672682e-257!GO:0043226;organelle;1.00401799172539e-213!GO:0043229;intracellular organelle;4.72771970737554e-213!GO:0043231;intracellular membrane-bound organelle;1.91746456882415e-210!GO:0043227;membrane-bound organelle;2.73010847922594e-210!GO:0005737;cytoplasm;1.07919804816458e-196!GO:0044422;organelle part;1.12185212162153e-167!GO:0044446;intracellular organelle part;3.91783195123147e-166!GO:0044444;cytoplasmic part;4.59635318838561e-149!GO:0032991;macromolecular complex;9.40752075854652e-106!GO:0044237;cellular metabolic process;1.83461537545151e-100!GO:0044238;primary metabolic process;1.9418277619225e-100!GO:0030529;ribonucleoprotein complex;2.41218748187379e-91!GO:0005739;mitochondrion;1.50472961644369e-83!GO:0044428;nuclear part;1.70709250604879e-82!GO:0043170;macromolecule metabolic process;7.89492423688282e-82!GO:0043233;organelle lumen;1.59293897792817e-81!GO:0031974;membrane-enclosed lumen;1.59293897792817e-81!GO:0003723;RNA binding;4.06195703978983e-79!GO:0005634;nucleus;1.84051420502778e-78!GO:0005515;protein binding;1.62346904951449e-62!GO:0006396;RNA processing;1.61483249622353e-56!GO:0031090;organelle membrane;6.65224067891762e-56!GO:0005840;ribosome;9.98101527502242e-55!GO:0044429;mitochondrial part;3.41630586249809e-53!GO:0043234;protein complex;1.31174335541467e-52!GO:0006412;translation;5.74365031577259e-51!GO:0019538;protein metabolic process;1.72976762911149e-50!GO:0009058;biosynthetic process;5.06514519663004e-50!GO:0016043;cellular component organization and biogenesis;1.69520633450913e-49!GO:0031967;organelle envelope;1.27155991839135e-47!GO:0031975;envelope;1.84587902022087e-47!GO:0031981;nuclear lumen;3.08628524869078e-47!GO:0003735;structural constituent of ribosome;1.70471710948266e-46!GO:0044249;cellular biosynthetic process;2.12340418989195e-45!GO:0033036;macromolecule localization;2.90714274310433e-45!GO:0015031;protein transport;5.07407499492409e-45!GO:0044267;cellular protein metabolic process;4.23904917767888e-44!GO:0044260;cellular macromolecule metabolic process;9.42866955339873e-44!GO:0043228;non-membrane-bound organelle;1.61573096166516e-43!GO:0043232;intracellular non-membrane-bound organelle;1.61573096166516e-43!GO:0016071;mRNA metabolic process;4.82580258114159e-43!GO:0008104;protein localization;6.41647320270141e-41!GO:0045184;establishment of protein localization;1.08383726669115e-40!GO:0043283;biopolymer metabolic process;3.25393116191698e-40!GO:0009059;macromolecule biosynthetic process;1.89234824203413e-39!GO:0033279;ribosomal subunit;1.16172857663332e-38!GO:0006996;organelle organization and biogenesis;8.96129866303217e-38!GO:0008380;RNA splicing;2.50701866434814e-37!GO:0006397;mRNA processing;2.91783281598052e-37!GO:0006259;DNA metabolic process;4.33335945196742e-37!GO:0065003;macromolecular complex assembly;1.77250390189506e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.60707453707063e-36!GO:0046907;intracellular transport;1.11937758861392e-35!GO:0005829;cytosol;2.3139465388362e-35!GO:0007049;cell cycle;2.55720054613986e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.35026523097886e-34!GO:0010467;gene expression;5.17587358783958e-34!GO:0022607;cellular component assembly;9.29367890631551e-33!GO:0005740;mitochondrial envelope;7.20079287250057e-32!GO:0019866;organelle inner membrane;1.63339471441999e-31!GO:0006886;intracellular protein transport;7.47437174789806e-31!GO:0031966;mitochondrial membrane;5.91270509583175e-30!GO:0005743;mitochondrial inner membrane;5.76080017103213e-29!GO:0005681;spliceosome;6.25215507637029e-28!GO:0005654;nucleoplasm;1.68550621275077e-27!GO:0000166;nucleotide binding;2.85051118807379e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.79249402126959e-26!GO:0022402;cell cycle process;8.1692417397619e-26!GO:0000278;mitotic cell cycle;2.06428607556252e-25!GO:0031980;mitochondrial lumen;2.27344359802278e-25!GO:0005759;mitochondrial matrix;2.27344359802278e-25!GO:0006974;response to DNA damage stimulus;1.68427439579317e-24!GO:0012505;endomembrane system;1.84028181009302e-24!GO:0006119;oxidative phosphorylation;1.82833379814089e-23!GO:0051641;cellular localization;3.41186215917701e-23!GO:0051649;establishment of cellular localization;3.41186215917701e-23!GO:0005694;chromosome;9.08175474225907e-23!GO:0044451;nucleoplasm part;1.67181930434058e-22!GO:0006281;DNA repair;4.78949554459462e-21!GO:0022403;cell cycle phase;6.49593692637733e-21!GO:0044455;mitochondrial membrane part;1.53829394206301e-20!GO:0003676;nucleic acid binding;2.24549594838055e-20!GO:0015935;small ribosomal subunit;2.25347670840068e-20!GO:0005783;endoplasmic reticulum;2.92382789166563e-20!GO:0044427;chromosomal part;3.63338006604333e-20!GO:0044445;cytosolic part;6.28953647372292e-20!GO:0051301;cell division;6.73651836145784e-20!GO:0016462;pyrophosphatase activity;7.36918354136991e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.98891842401725e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.29659472472918e-19!GO:0044248;cellular catabolic process;1.60777112630502e-19!GO:0016874;ligase activity;1.84097681536466e-19!GO:0000087;M phase of mitotic cell cycle;1.84100141333917e-19!GO:0005730;nucleolus;2.16663151298104e-19!GO:0017111;nucleoside-triphosphatase activity;2.30706199083229e-19!GO:0015934;large ribosomal subunit;2.7564080484453e-19!GO:0009719;response to endogenous stimulus;2.96403889297555e-19!GO:0022618;protein-RNA complex assembly;3.22169968041011e-19!GO:0044265;cellular macromolecule catabolic process;3.34538348402304e-19!GO:0007067;mitosis;3.40490292210747e-19!GO:0051186;cofactor metabolic process;6.92372195951321e-19!GO:0032553;ribonucleotide binding;1.92440367815259e-18!GO:0032555;purine ribonucleotide binding;1.92440367815259e-18!GO:0017076;purine nucleotide binding;2.56952055712429e-18!GO:0006457;protein folding;4.77423345473478e-18!GO:0044432;endoplasmic reticulum part;8.20199960293555e-18!GO:0005746;mitochondrial respiratory chain;3.14145978288501e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.67534967469579e-17!GO:0000279;M phase;3.80262695029368e-17!GO:0005761;mitochondrial ribosome;4.02369344385337e-17!GO:0000313;organellar ribosome;4.02369344385337e-17!GO:0051276;chromosome organization and biogenesis;5.26193806829162e-17!GO:0009057;macromolecule catabolic process;9.23428203084524e-17!GO:0043285;biopolymer catabolic process;1.17750533598673e-16!GO:0031965;nuclear membrane;1.25656452913325e-16!GO:0005524;ATP binding;1.89490719892203e-16!GO:0032559;adenyl ribonucleotide binding;2.11642818221286e-16!GO:0048770;pigment granule;2.99502599366182e-16!GO:0042470;melanosome;2.99502599366182e-16!GO:0006732;coenzyme metabolic process;3.96219719977048e-16!GO:0030554;adenyl nucleotide binding;4.16292740530134e-16!GO:0005635;nuclear envelope;4.78758244556153e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.92238080611265e-16!GO:0003954;NADH dehydrogenase activity;4.92238080611265e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.92238080611265e-16!GO:0006512;ubiquitin cycle;5.1846709344814e-16!GO:0044453;nuclear membrane part;5.73863954283792e-16!GO:0042254;ribosome biogenesis and assembly;7.61838524207813e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;9.0222900126479e-16!GO:0006260;DNA replication;1.18973949162028e-15!GO:0044257;cellular protein catabolic process;1.31106742750641e-15!GO:0008135;translation factor activity, nucleic acid binding;1.50907494920841e-15!GO:0042623;ATPase activity, coupled;1.80131967814796e-15!GO:0019941;modification-dependent protein catabolic process;1.96635767875771e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.96635767875771e-15!GO:0016887;ATPase activity;2.91888210804588e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.13555228795936e-15!GO:0000502;proteasome complex (sensu Eukaryota);7.74548868061285e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.74548868061285e-15!GO:0000375;RNA splicing, via transesterification reactions;7.74548868061285e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.74548868061285e-15!GO:0006605;protein targeting;2.34721052623489e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.50520903639643e-14!GO:0042773;ATP synthesis coupled electron transport;2.50520903639643e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.07987845902865e-14!GO:0045271;respiratory chain complex I;5.07987845902865e-14!GO:0005747;mitochondrial respiratory chain complex I;5.07987845902865e-14!GO:0030163;protein catabolic process;5.67819316976525e-14!GO:0005794;Golgi apparatus;5.85844432762278e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.96379414445161e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.53646715298921e-14!GO:0005643;nuclear pore;9.85426390346704e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.09536710742025e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.25578274928573e-13!GO:0005789;endoplasmic reticulum membrane;1.31098080115091e-13!GO:0009056;catabolic process;1.35339904551711e-13!GO:0016070;RNA metabolic process;2.00354438342212e-13!GO:0051082;unfolded protein binding;2.87422551679178e-13!GO:0008134;transcription factor binding;3.14655301901233e-13!GO:0016604;nuclear body;4.01205980213215e-13!GO:0016192;vesicle-mediated transport;5.959598605165e-13!GO:0050657;nucleic acid transport;6.32641499978938e-13!GO:0051236;establishment of RNA localization;6.32641499978938e-13!GO:0050658;RNA transport;6.32641499978938e-13!GO:0006403;RNA localization;7.07096845513744e-13!GO:0065002;intracellular protein transport across a membrane;8.72840700890221e-13!GO:0048193;Golgi vesicle transport;9.30183122372933e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.42500342425495e-12!GO:0006399;tRNA metabolic process;1.79946587639365e-12!GO:0004386;helicase activity;1.98637926360918e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.10003855039034e-12!GO:0043412;biopolymer modification;2.59246252854855e-12!GO:0009055;electron carrier activity;4.55105767881346e-12!GO:0006323;DNA packaging;5.5740443933814e-12!GO:0008565;protein transporter activity;7.29148098710918e-12!GO:0006413;translational initiation;7.51875585135313e-12!GO:0006461;protein complex assembly;8.96605314522582e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.044923130331e-11!GO:0003743;translation initiation factor activity;1.06580959356364e-11!GO:0046930;pore complex;1.60314790686148e-11!GO:0051726;regulation of cell cycle;2.06128513874674e-11!GO:0000074;regulation of progression through cell cycle;3.19398552155767e-11!GO:0006446;regulation of translational initiation;5.35470177124006e-11!GO:0051028;mRNA transport;7.4410853077362e-11!GO:0016607;nuclear speck;7.80027525553028e-11!GO:0006364;rRNA processing;1.0289739949013e-10!GO:0008026;ATP-dependent helicase activity;1.45216831521546e-10!GO:0016072;rRNA metabolic process;1.86835210241614e-10!GO:0000785;chromatin;1.96543513508462e-10!GO:0006913;nucleocytoplasmic transport;2.18247865603228e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.97611943277951e-10!GO:0006464;protein modification process;3.3265693898463e-10!GO:0009259;ribonucleotide metabolic process;4.11768643630771e-10!GO:0051169;nuclear transport;4.3808137928635e-10!GO:0051188;cofactor biosynthetic process;5.34521301466281e-10!GO:0006163;purine nucleotide metabolic process;1.16017986208694e-09!GO:0005793;ER-Golgi intermediate compartment;1.20873214996162e-09!GO:0006333;chromatin assembly or disassembly;2.59880201064538e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.95970245021716e-09!GO:0009060;aerobic respiration;3.02287203907679e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.25109785585019e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.81338381337163e-09!GO:0051329;interphase of mitotic cell cycle;5.88192144428509e-09!GO:0065004;protein-DNA complex assembly;5.8821964932213e-09!GO:0016491;oxidoreductase activity;6.34327618751754e-09!GO:0000775;chromosome, pericentric region;6.3944583985684e-09!GO:0016779;nucleotidyltransferase activity;7.32377388521591e-09!GO:0006164;purine nucleotide biosynthetic process;7.578180415238e-09!GO:0009150;purine ribonucleotide metabolic process;8.29020072194009e-09!GO:0043687;post-translational protein modification;8.29020072194009e-09!GO:0016787;hydrolase activity;8.53396726389865e-09!GO:0016740;transferase activity;9.63623399465777e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.08412070884804e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.08412070884804e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.08412070884804e-08!GO:0009260;ribonucleotide biosynthetic process;1.19642806034913e-08!GO:0008639;small protein conjugating enzyme activity;1.29922091410281e-08!GO:0009108;coenzyme biosynthetic process;1.31877705310834e-08!GO:0006261;DNA-dependent DNA replication;1.43272292930809e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.56760635084613e-08!GO:0043038;amino acid activation;1.7389538284933e-08!GO:0006418;tRNA aminoacylation for protein translation;1.7389538284933e-08!GO:0043039;tRNA aminoacylation;1.7389538284933e-08!GO:0015986;ATP synthesis coupled proton transport;1.7998089604963e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.7998089604963e-08!GO:0019787;small conjugating protein ligase activity;2.08278692324222e-08!GO:0004842;ubiquitin-protein ligase activity;2.39298722400161e-08!GO:0045333;cellular respiration;3.1475720889213e-08!GO:0019829;cation-transporting ATPase activity;4.00350684008801e-08!GO:0051325;interphase;4.45029895351141e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.62602567272477e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.17143522260201e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.6576800718788e-08!GO:0009141;nucleoside triphosphate metabolic process;6.48365290074188e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.51000722079087e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.51000722079087e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.78140716602625e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.78140716602625e-08!GO:0017038;protein import;1.11962576106747e-07!GO:0015630;microtubule cytoskeleton;1.20964045893308e-07!GO:0003712;transcription cofactor activity;1.25243970352277e-07!GO:0006099;tricarboxylic acid cycle;1.36779916912494e-07!GO:0046356;acetyl-CoA catabolic process;1.36779916912494e-07!GO:0006084;acetyl-CoA metabolic process;1.37495246669357e-07!GO:0046034;ATP metabolic process;1.46765038969039e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.58341750790655e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.58341750790655e-07!GO:0005819;spindle;1.65736892398639e-07!GO:0016853;isomerase activity;1.82946091092332e-07!GO:0006915;apoptosis;1.8760321959928e-07!GO:0006366;transcription from RNA polymerase II promoter;1.96258012862004e-07!GO:0012501;programmed cell death;2.04787947575006e-07!GO:0043623;cellular protein complex assembly;2.08259583877481e-07!GO:0006754;ATP biosynthetic process;2.26072885672931e-07!GO:0006753;nucleoside phosphate metabolic process;2.26072885672931e-07!GO:0016881;acid-amino acid ligase activity;2.40330798405987e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.50134924946693e-07!GO:0007051;spindle organization and biogenesis;3.11551030333903e-07!GO:0048475;coated membrane;3.22655003081559e-07!GO:0030117;membrane coat;3.22655003081559e-07!GO:0016568;chromatin modification;3.27012001833319e-07!GO:0000245;spliceosome assembly;3.50154799723215e-07!GO:0009117;nucleotide metabolic process;3.53032695674671e-07!GO:0006752;group transfer coenzyme metabolic process;4.65867225127394e-07!GO:0031988;membrane-bound vesicle;4.99445205647165e-07!GO:0005768;endosome;5.01750227260983e-07!GO:0031982;vesicle;5.41701554773601e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.75965404136623e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.92263970331361e-07!GO:0032446;protein modification by small protein conjugation;8.14320860939462e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.92917576033274e-07!GO:0043566;structure-specific DNA binding;8.94727261722661e-07!GO:0031410;cytoplasmic vesicle;9.17697872228274e-07!GO:0008219;cell death;9.3812437074862e-07!GO:0016265;death;9.3812437074862e-07!GO:0005657;replication fork;1.21577491089992e-06!GO:0007005;mitochondrion organization and biogenesis;1.2277768640365e-06!GO:0003697;single-stranded DNA binding;1.34671390076413e-06!GO:0005813;centrosome;1.39423483237374e-06!GO:0031497;chromatin assembly;1.45246045595785e-06!GO:0030120;vesicle coat;1.53190958220077e-06!GO:0030662;coated vesicle membrane;1.53190958220077e-06!GO:0045259;proton-transporting ATP synthase complex;1.53190958220077e-06!GO:0016567;protein ubiquitination;1.63779633767831e-06!GO:0051187;cofactor catabolic process;1.65156995196015e-06!GO:0009109;coenzyme catabolic process;1.68284335531228e-06!GO:0005815;microtubule organizing center;1.76591617841313e-06!GO:0006334;nucleosome assembly;2.11258167949793e-06!GO:0019752;carboxylic acid metabolic process;2.24516565573802e-06!GO:0006082;organic acid metabolic process;2.43775040197564e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.74213369096244e-06!GO:0005762;mitochondrial large ribosomal subunit;3.03200670521959e-06!GO:0000315;organellar large ribosomal subunit;3.03200670521959e-06!GO:0008654;phospholipid biosynthetic process;3.28394518599935e-06!GO:0003899;DNA-directed RNA polymerase activity;3.39139155369686e-06!GO:0008094;DNA-dependent ATPase activity;3.46488451755273e-06!GO:0000075;cell cycle checkpoint;3.6111749438623e-06!GO:0006613;cotranslational protein targeting to membrane;3.81593942150712e-06!GO:0003724;RNA helicase activity;4.50379913331687e-06!GO:0005667;transcription factor complex;4.92272736403429e-06!GO:0005773;vacuole;6.76936645702952e-06!GO:0050662;coenzyme binding;7.44531911341167e-06!GO:0051246;regulation of protein metabolic process;8.60121012270365e-06!GO:0044431;Golgi apparatus part;9.04466657428535e-06!GO:0006793;phosphorus metabolic process;1.01279678503984e-05!GO:0006796;phosphate metabolic process;1.01279678503984e-05!GO:0048037;cofactor binding;1.2263055355611e-05!GO:0006302;double-strand break repair;1.35198011794752e-05!GO:0051168;nuclear export;1.4827685246874e-05!GO:0042981;regulation of apoptosis;1.92105901032901e-05!GO:0051427;hormone receptor binding;2.04407783520933e-05!GO:0016126;sterol biosynthetic process;2.07114308611525e-05!GO:0000314;organellar small ribosomal subunit;2.07114308611525e-05!GO:0005763;mitochondrial small ribosomal subunit;2.07114308611525e-05!GO:0005788;endoplasmic reticulum lumen;2.44020896671852e-05!GO:0007059;chromosome segregation;2.59305771717454e-05!GO:0043021;ribonucleoprotein binding;2.59817469359313e-05!GO:0043067;regulation of programmed cell death;2.97600755033604e-05!GO:0000151;ubiquitin ligase complex;3.00102953500538e-05!GO:0000776;kinetochore;3.13641635494274e-05!GO:0044440;endosomal part;3.68923928380024e-05!GO:0010008;endosome membrane;3.68923928380024e-05!GO:0005798;Golgi-associated vesicle;4.16905077302286e-05!GO:0051170;nuclear import;4.17335226027539e-05!GO:0006091;generation of precursor metabolites and energy;4.18258274482764e-05!GO:0035257;nuclear hormone receptor binding;4.38368767111104e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.39972678824919e-05!GO:0008033;tRNA processing;4.45298205864998e-05!GO:0007010;cytoskeleton organization and biogenesis;4.4642374963906e-05!GO:0008610;lipid biosynthetic process;4.70379607101543e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.71014912220579e-05!GO:0000323;lytic vacuole;4.81223243131728e-05!GO:0005764;lysosome;4.81223243131728e-05!GO:0006695;cholesterol biosynthetic process;4.81223243131728e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.11206222233462e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.47642920344294e-05!GO:0015399;primary active transmembrane transporter activity;6.47642920344294e-05!GO:0016310;phosphorylation;6.69934831030097e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.10939995275178e-05!GO:0031252;leading edge;8.04344817425502e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.39181567543509e-05!GO:0003713;transcription coactivator activity;9.12390216529397e-05!GO:0016363;nuclear matrix;9.65187834044544e-05!GO:0006520;amino acid metabolic process;0.00010631178528102!GO:0005770;late endosome;0.000109210902014978!GO:0044452;nucleolar part;0.00010939776492078!GO:0043681;protein import into mitochondrion;0.000112862855169366!GO:0045454;cell redox homeostasis;0.00011553025048116!GO:0006626;protein targeting to mitochondrion;0.000118920600481112!GO:0006606;protein import into nucleus;0.0001249705093194!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000141709488046439!GO:0006402;mRNA catabolic process;0.000167254825874864!GO:0005525;GTP binding;0.000171182449159348!GO:0004298;threonine endopeptidase activity;0.000190643000816912!GO:0009165;nucleotide biosynthetic process;0.000201611062967448!GO:0008186;RNA-dependent ATPase activity;0.000202153082679033!GO:0016859;cis-trans isomerase activity;0.000205617970603769!GO:0030867;rough endoplasmic reticulum membrane;0.000205861161384311!GO:0051052;regulation of DNA metabolic process;0.000245830673489436!GO:0005048;signal sequence binding;0.000248161451445741!GO:0016563;transcription activator activity;0.000251460191763793!GO:0019899;enzyme binding;0.000257471859237714!GO:0045786;negative regulation of progression through cell cycle;0.000268984573100182!GO:0044255;cellular lipid metabolic process;0.000268984573100182!GO:0048523;negative regulation of cellular process;0.000272960340862826!GO:0032508;DNA duplex unwinding;0.000273812459858709!GO:0032392;DNA geometric change;0.000273812459858709!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000278075339637722!GO:0000059;protein import into nucleus, docking;0.000278491925595829!GO:0003690;double-stranded DNA binding;0.000301009578273935!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000312967253273509!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00031590773251248!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000327126448332372!GO:0003682;chromatin binding;0.000327870593654511!GO:0006401;RNA catabolic process;0.000337188633285689!GO:0008168;methyltransferase activity;0.000353902943553663!GO:0016741;transferase activity, transferring one-carbon groups;0.000353902943553663!GO:0000786;nucleosome;0.000357640558489195!GO:0051789;response to protein stimulus;0.00036499121324246!GO:0006986;response to unfolded protein;0.00036499121324246!GO:0003678;DNA helicase activity;0.000411857281569755!GO:0030036;actin cytoskeleton organization and biogenesis;0.000428604670841412!GO:0048471;perinuclear region of cytoplasm;0.000452488267778645!GO:0006612;protein targeting to membrane;0.000452488267778645!GO:0043069;negative regulation of programmed cell death;0.00047687240210154!GO:0000139;Golgi membrane;0.000494741057285065!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000524039318483856!GO:0016044;membrane organization and biogenesis;0.000556224394472901!GO:0007017;microtubule-based process;0.000559074658348851!GO:0005769;early endosome;0.000572576691673965!GO:0051252;regulation of RNA metabolic process;0.000577352155160659!GO:0004004;ATP-dependent RNA helicase activity;0.000577352155160659!GO:0043066;negative regulation of apoptosis;0.000586444239027403!GO:0046474;glycerophospholipid biosynthetic process;0.000597806461841153!GO:0005885;Arp2/3 protein complex;0.000610943760293999!GO:0007052;mitotic spindle organization and biogenesis;0.000610943760293999!GO:0046483;heterocycle metabolic process;0.00061622194537948!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00061622194537948!GO:0051287;NAD binding;0.00061879896478702!GO:0000082;G1/S transition of mitotic cell cycle;0.000628304856023661!GO:0051920;peroxiredoxin activity;0.000644560299103628!GO:0006519;amino acid and derivative metabolic process;0.000671977587340858!GO:0030118;clathrin coat;0.000676860673529815!GO:0006405;RNA export from nucleus;0.000691449095605328!GO:0006414;translational elongation;0.000728811544160126!GO:0006839;mitochondrial transport;0.000771228911913872!GO:0006268;DNA unwinding during replication;0.000774335833602249!GO:0008022;protein C-terminus binding;0.000785929702286979!GO:0042802;identical protein binding;0.000791068502368856!GO:0015992;proton transport;0.00079405276870881!GO:0033116;ER-Golgi intermediate compartment membrane;0.000794488145199214!GO:0007088;regulation of mitosis;0.000801025776175574!GO:0006818;hydrogen transport;0.000818010447054318!GO:0015980;energy derivation by oxidation of organic compounds;0.000833664557504812!GO:0005684;U2-dependent spliceosome;0.000833664557504812!GO:0043492;ATPase activity, coupled to movement of substances;0.000891553327493846!GO:0031968;organelle outer membrane;0.000940269290269747!GO:0003729;mRNA binding;0.000986258308859159!GO:0006629;lipid metabolic process;0.00099995397001972!GO:0044262;cellular carbohydrate metabolic process;0.00101498699276007!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0010277534782069!GO:0006807;nitrogen compound metabolic process;0.00103993903099635!GO:0006950;response to stress;0.0010526385297499!GO:0003684;damaged DNA binding;0.00110421273120194!GO:0030133;transport vesicle;0.00112191417301888!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00113141849885313!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00113141849885313!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00113141849885313!GO:0005905;coated pit;0.00114562982152878!GO:0048500;signal recognition particle;0.00120591157903828!GO:0016408;C-acyltransferase activity;0.00124818621478933!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00126729793239484!GO:0005791;rough endoplasmic reticulum;0.00130298481107236!GO:0003924;GTPase activity;0.00131152256186303!GO:0009308;amine metabolic process;0.00133035880517926!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00139771713656831!GO:0005637;nuclear inner membrane;0.001414940491803!GO:0030119;AP-type membrane coat adaptor complex;0.00146637003045709!GO:0000922;spindle pole;0.00147276559040829!GO:0032561;guanyl ribonucleotide binding;0.00149238831130371!GO:0019001;guanyl nucleotide binding;0.00149238831130371!GO:0007093;mitotic cell cycle checkpoint;0.0015180268919684!GO:0030029;actin filament-based process;0.00154164919696882!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00155810012984647!GO:0006310;DNA recombination;0.00156246035684994!GO:0031324;negative regulation of cellular metabolic process;0.00156582502189325!GO:0019843;rRNA binding;0.00156702269294616!GO:0019867;outer membrane;0.0015996207881806!GO:0046467;membrane lipid biosynthetic process;0.0016147206543002!GO:0016125;sterol metabolic process;0.00162825890626604!GO:0006979;response to oxidative stress;0.00165014348804591!GO:0000049;tRNA binding;0.00166740021486206!GO:0006916;anti-apoptosis;0.00173357585527239!GO:0006767;water-soluble vitamin metabolic process;0.00181052753226904!GO:0007264;small GTPase mediated signal transduction;0.00187375883086111!GO:0031124;mRNA 3'-end processing;0.00188266977545065!GO:0030880;RNA polymerase complex;0.00210096483858574!GO:0016272;prefoldin complex;0.00218177512261193!GO:0006891;intra-Golgi vesicle-mediated transport;0.00220316291648743!GO:0005874;microtubule;0.00228903264555524!GO:0050794;regulation of cellular process;0.00240669059717706!GO:0030659;cytoplasmic vesicle membrane;0.00240669059717706!GO:0004527;exonuclease activity;0.00241943944729135!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00243894353692514!GO:0030658;transport vesicle membrane;0.00244639558809533!GO:0046983;protein dimerization activity;0.00246532735730219!GO:0006338;chromatin remodeling;0.00249286867651822!GO:0008312;7S RNA binding;0.00250427153678819!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00251937706489655!GO:0005876;spindle microtubule;0.00252995271813196!GO:0005741;mitochondrial outer membrane;0.00253084817387822!GO:0030131;clathrin adaptor complex;0.00255637235493653!GO:0051539;4 iron, 4 sulfur cluster binding;0.00257764216219318!GO:0006595;polyamine metabolic process;0.00275103699777464!GO:0000819;sister chromatid segregation;0.00277586186895841!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00277928433880974!GO:0045047;protein targeting to ER;0.00277928433880974!GO:0006352;transcription initiation;0.00281524201955293!GO:0065009;regulation of a molecular function;0.0028596889252629!GO:0022890;inorganic cation transmembrane transporter activity;0.00299779527407149!GO:0009112;nucleobase metabolic process;0.00307828428291457!GO:0043488;regulation of mRNA stability;0.00307880104553627!GO:0043487;regulation of RNA stability;0.00307880104553627!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00307880104553627!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00307880104553627!GO:0000070;mitotic sister chromatid segregation;0.00309777467851952!GO:0009892;negative regulation of metabolic process;0.00316861020270007!GO:0016564;transcription repressor activity;0.00345300875848445!GO:0008092;cytoskeletal protein binding;0.00349588977573304!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00357107402516276!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00377799044839396!GO:0046489;phosphoinositide biosynthetic process;0.00389090615631438!GO:0048519;negative regulation of biological process;0.00406885326537073!GO:0004518;nuclease activity;0.0042129476299578!GO:0044433;cytoplasmic vesicle part;0.00421563076627639!GO:0042393;histone binding;0.00421563076627639!GO:0003714;transcription corepressor activity;0.00421708719536547!GO:0030521;androgen receptor signaling pathway;0.00421708719536547!GO:0000228;nuclear chromosome;0.00440069841572421!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00440069841572421!GO:0000428;DNA-directed RNA polymerase complex;0.00440069841572421!GO:0048487;beta-tubulin binding;0.0044323991487459!GO:0006275;regulation of DNA replication;0.00446533106988415!GO:0030176;integral to endoplasmic reticulum membrane;0.00450356628864755!GO:0005758;mitochondrial intermembrane space;0.00451521577047393!GO:0006383;transcription from RNA polymerase III promoter;0.00481820390638857!GO:0043624;cellular protein complex disassembly;0.004839629309778!GO:0012506;vesicle membrane;0.00492222498812468!GO:0006270;DNA replication initiation;0.00512784661306922!GO:0032259;methylation;0.00551115309778442!GO:0001726;ruffle;0.00551246600770214!GO:0051087;chaperone binding;0.00552935112545055!GO:0006611;protein export from nucleus;0.00558652496245308!GO:0009451;RNA modification;0.00560683510502636!GO:0031123;RNA 3'-end processing;0.00568688459717389!GO:0043022;ribosome binding;0.0057365667698354!GO:0008139;nuclear localization sequence binding;0.0057494633403535!GO:0030660;Golgi-associated vesicle membrane;0.00579085940256191!GO:0031072;heat shock protein binding;0.00579085940256191!GO:0035258;steroid hormone receptor binding;0.006131819667639!GO:0006643;membrane lipid metabolic process;0.00653590327704236!GO:0030134;ER to Golgi transport vesicle;0.00656036361430688!GO:0003746;translation elongation factor activity;0.00659247588869342!GO:0006650;glycerophospholipid metabolic process;0.00670447936176559!GO:0000086;G2/M transition of mitotic cell cycle;0.00689546803714922!GO:0006769;nicotinamide metabolic process;0.00701372425504945!GO:0006144;purine base metabolic process;0.00712399146829179!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00712399146829179!GO:0015002;heme-copper terminal oxidase activity;0.00712399146829179!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00712399146829179!GO:0004129;cytochrome-c oxidase activity;0.00712399146829179!GO:0008652;amino acid biosynthetic process;0.00734058864972463!GO:0006066;alcohol metabolic process;0.00743834914562747!GO:0007021;tubulin folding;0.00743834914562747!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00745964907441335!GO:0016584;nucleosome positioning;0.00746980021328531!GO:0005777;peroxisome;0.00772694504943833!GO:0042579;microbody;0.00772694504943833!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0079462995726574!GO:0009116;nucleoside metabolic process;0.00796814086178006!GO:0030663;COPI coated vesicle membrane;0.00827732664913391!GO:0030126;COPI vesicle coat;0.00827732664913391!GO:0005832;chaperonin-containing T-complex;0.00841086357176827!GO:0032984;macromolecular complex disassembly;0.00841956007258646!GO:0043596;nuclear replication fork;0.00845428731290878!GO:0043414;biopolymer methylation;0.00856014425022461!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00920470514596167!GO:0016251;general RNA polymerase II transcription factor activity;0.00931789196696475!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00946295148525046!GO:0000725;recombinational repair;0.00950255315901495!GO:0000724;double-strand break repair via homologous recombination;0.00950255315901495!GO:0004576;oligosaccharyl transferase activity;0.00950566780261156!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00956113873791966!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0098114786384728!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0100110505422688!GO:0006378;mRNA polyadenylation;0.0100540219770224!GO:0009303;rRNA transcription;0.0101225798168922!GO:0051017;actin filament bundle formation;0.010188731727359!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0102022380836961!GO:0004177;aminopeptidase activity;0.0105529985057263!GO:0031970;organelle envelope lumen;0.0106666000223926!GO:0040029;regulation of gene expression, epigenetic;0.0108236567544678!GO:0006007;glucose catabolic process;0.0108578047175837!GO:0031570;DNA integrity checkpoint;0.0110377213284485!GO:0030127;COPII vesicle coat;0.0111051630793733!GO:0012507;ER to Golgi transport vesicle membrane;0.0111051630793733!GO:0006672;ceramide metabolic process;0.0116330167023574!GO:0008203;cholesterol metabolic process;0.0116439280649962!GO:0000793;condensed chromosome;0.0117335553323409!GO:0051540;metal cluster binding;0.011824202129669!GO:0051536;iron-sulfur cluster binding;0.011824202129669!GO:0046128;purine ribonucleoside metabolic process;0.0122658559924527!GO:0042278;purine nucleoside metabolic process;0.0122658559924527!GO:0000178;exosome (RNase complex);0.0124189101986317!GO:0008234;cysteine-type peptidase activity;0.0124610832577146!GO:0007006;mitochondrial membrane organization and biogenesis;0.0127226371867347!GO:0046966;thyroid hormone receptor binding;0.0128058082459451!GO:0051053;negative regulation of DNA metabolic process;0.0131555916261275!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0134807200355304!GO:0006733;oxidoreduction coenzyme metabolic process;0.013732206870758!GO:0007040;lysosome organization and biogenesis;0.0137480175288049!GO:0000209;protein polyubiquitination;0.0142803618427316!GO:0008408;3'-5' exonuclease activity;0.0143210218719405!GO:0000096;sulfur amino acid metabolic process;0.014710729314593!GO:0030137;COPI-coated vesicle;0.0147813859034212!GO:0015631;tubulin binding;0.0147813859034212!GO:0043241;protein complex disassembly;0.0147830844189204!GO:0046519;sphingoid metabolic process;0.0149001786743638!GO:0006596;polyamine biosynthetic process;0.0150881695170719!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0154227653797696!GO:0007015;actin filament organization;0.0155449842188536!GO:0008250;oligosaccharyl transferase complex;0.0158916168139446!GO:0009081;branched chain family amino acid metabolic process;0.0159741850242886!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0161060334906998!GO:0030027;lamellipodium;0.0163976196799497!GO:0004003;ATP-dependent DNA helicase activity;0.01651669952359!GO:0008180;signalosome;0.0165288333327938!GO:0016197;endosome transport;0.0166876402375905!GO:0000726;non-recombinational repair;0.0169101681287939!GO:0006739;NADP metabolic process;0.0171214981843111!GO:0043601;nuclear replisome;0.0175005002056748!GO:0030894;replisome;0.0175005002056748!GO:0016407;acetyltransferase activity;0.0179381097935823!GO:0005975;carbohydrate metabolic process;0.0179477782408451!GO:0044438;microbody part;0.0182097350076027!GO:0044439;peroxisomal part;0.0182097350076027!GO:0042770;DNA damage response, signal transduction;0.0182948604076478!GO:0004532;exoribonuclease activity;0.0187458352660345!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0187458352660345!GO:0033673;negative regulation of kinase activity;0.0187458352660345!GO:0006469;negative regulation of protein kinase activity;0.0187458352660345!GO:0006417;regulation of translation;0.0188970256401917!GO:0008299;isoprenoid biosynthetic process;0.019088810671013!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0192969862022087!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0194073109753548!GO:0030132;clathrin coat of coated pit;0.0195450922339686!GO:0006284;base-excision repair;0.0196644251723223!GO:0043433;negative regulation of transcription factor activity;0.0200307697880497!GO:0004185;serine carboxypeptidase activity;0.0200583461736468!GO:0008632;apoptotic program;0.0202241155676656!GO:0003711;transcription elongation regulator activity;0.0205255084862387!GO:0000339;RNA cap binding;0.0214744410041149!GO:0009119;ribonucleoside metabolic process;0.0216042212237604!GO:0046365;monosaccharide catabolic process;0.0218921913770759!GO:0006400;tRNA modification;0.0221673248736544!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0223431254297205!GO:0031529;ruffle organization and biogenesis;0.0223500534198722!GO:0008538;proteasome activator activity;0.0225579314780857!GO:0043284;biopolymer biosynthetic process;0.0226152646724119!GO:0045045;secretory pathway;0.0230942462630702!GO:0006289;nucleotide-excision repair;0.0233195084523287!GO:0008286;insulin receptor signaling pathway;0.0233781854053832!GO:0051348;negative regulation of transferase activity;0.0235428123927263!GO:0031903;microbody membrane;0.0235428123927263!GO:0005778;peroxisomal membrane;0.0235428123927263!GO:0006730;one-carbon compound metabolic process;0.0235594213007333!GO:0043189;H4/H2A histone acetyltransferase complex;0.0236965860337933!GO:0006749;glutathione metabolic process;0.0241883159382435!GO:0006220;pyrimidine nucleotide metabolic process;0.0246562177851241!GO:0006644;phospholipid metabolic process;0.0249351734706651!GO:0004674;protein serine/threonine kinase activity;0.0249524260374995!GO:0006376;mRNA splice site selection;0.0249544952450282!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0249544952450282!GO:0003756;protein disulfide isomerase activity;0.0249901402927726!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0249901402927726!GO:0000152;nuclear ubiquitin ligase complex;0.0255134888355073!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0256754268444144!GO:0005996;monosaccharide metabolic process;0.0259419066079374!GO:0004300;enoyl-CoA hydratase activity;0.0260234299034682!GO:0030125;clathrin vesicle coat;0.0260234299034682!GO:0030665;clathrin coated vesicle membrane;0.0260234299034682!GO:0030139;endocytic vesicle;0.0260937233918447!GO:0017166;vinculin binding;0.0261211394107803!GO:0006897;endocytosis;0.0261211394107803!GO:0010324;membrane invagination;0.0261211394107803!GO:0030149;sphingolipid catabolic process;0.0261998876072386!GO:0043174;nucleoside salvage;0.0263407543562088!GO:0006166;purine ribonucleoside salvage;0.0263407543562088!GO:0043101;purine salvage;0.0263407543562088!GO:0045947;negative regulation of translational initiation;0.0265850537166874!GO:0016746;transferase activity, transferring acyl groups;0.0267004391910688!GO:0006406;mRNA export from nucleus;0.0268230209752284!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.026991214282643!GO:0005663;DNA replication factor C complex;0.0272239542566409!GO:0006541;glutamine metabolic process;0.0278256241859712!GO:0022884;macromolecule transmembrane transporter activity;0.0278256241859712!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0278256241859712!GO:0007033;vacuole organization and biogenesis;0.028449596702053!GO:0005784;translocon complex;0.0289403416024426!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0290838458063493!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0291479170164881!GO:0030518;steroid hormone receptor signaling pathway;0.0291840494229448!GO:0008415;acyltransferase activity;0.0291887961474856!GO:0001889;liver development;0.0291887961474856!GO:0031577;spindle checkpoint;0.0295575755916152!GO:0006266;DNA ligation;0.0298410808226985!GO:0003702;RNA polymerase II transcription factor activity;0.0303504287134055!GO:0001824;blastocyst development;0.0305099137820467!GO:0008320;protein transmembrane transporter activity;0.030588743105567!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0308859528815998!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0309960537405541!GO:0008156;negative regulation of DNA replication;0.0312050520790984!GO:0000792;heterochromatin;0.0312330397810684!GO:0019318;hexose metabolic process;0.031611349685483!GO:0046164;alcohol catabolic process;0.031826950049866!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0319840597577036!GO:0016860;intramolecular oxidoreductase activity;0.032248972193914!GO:0001701;in utero embryonic development;0.0323622356324181!GO:0000062;acyl-CoA binding;0.0323839608592572!GO:0006118;electron transport;0.0323839608592572!GO:0006360;transcription from RNA polymerase I promoter;0.0325184453768474!GO:0006506;GPI anchor biosynthetic process;0.0327659670107709!GO:0051656;establishment of organelle localization;0.0328372109378875!GO:0043130;ubiquitin binding;0.0329965996169939!GO:0032182;small conjugating protein binding;0.0329965996169939!GO:0032200;telomere organization and biogenesis;0.0333342404718968!GO:0000723;telomere maintenance;0.0333342404718968!GO:0044450;microtubule organizing center part;0.0333717103980889!GO:0044454;nuclear chromosome part;0.0333996667161453!GO:0042769;DNA damage response, detection of DNA damage;0.0338959738475557!GO:0019320;hexose catabolic process;0.0341301060461329!GO:0051640;organelle localization;0.0345960575618815!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0353457541098942!GO:0006740;NADPH regeneration;0.0355944246992662!GO:0006098;pentose-phosphate shunt;0.0355944246992662!GO:0031901;early endosome membrane;0.0359269695225022!GO:0000123;histone acetyltransferase complex;0.036563914381985!GO:0018196;peptidyl-asparagine modification;0.036563914381985!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.036563914381985!GO:0019362;pyridine nucleotide metabolic process;0.0365766496109917!GO:0007265;Ras protein signal transduction;0.036772235877291!GO:0006766;vitamin metabolic process;0.0372929533913174!GO:0000077;DNA damage checkpoint;0.0377442695065795!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0377442695065795!GO:0016791;phosphoric monoester hydrolase activity;0.038162018878161!GO:0008097;5S rRNA binding;0.0383435721929417!GO:0005774;vacuolar membrane;0.0384140491116442!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0384140491116442!GO:0001832;blastocyst growth;0.0389174519893883!GO:0050749;apolipoprotein E receptor binding;0.0392470691540533!GO:0031625;ubiquitin protein ligase binding;0.0393888981418499!GO:0035267;NuA4 histone acetyltransferase complex;0.0393888981418499!GO:0006892;post-Golgi vesicle-mediated transport;0.0393888981418499!GO:0001558;regulation of cell growth;0.0397060670328954!GO:0008536;Ran GTPase binding;0.0397060670328954!GO:0050790;regulation of catalytic activity;0.0397452496976822!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0408307228216731!GO:0055083;monovalent inorganic anion homeostasis;0.0408307228216731!GO:0055064;chloride ion homeostasis;0.0408307228216731!GO:0030644;cellular chloride ion homeostasis;0.0408307228216731!GO:0031371;ubiquitin conjugating enzyme complex;0.041232425317054!GO:0006301;postreplication repair;0.0421956746938777!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0430053941591081!GO:0045039;protein import into mitochondrial inner membrane;0.0430053941591081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0430796073771769!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0435619026662442!GO:0006379;mRNA cleavage;0.0443541278641201!GO:0007346;regulation of progression through mitotic cell cycle;0.0443571256997392!GO:0006778;porphyrin metabolic process;0.0443571256997392!GO:0033013;tetrapyrrole metabolic process;0.0443571256997392!GO:0004540;ribonuclease activity;0.0448913006829512!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0449138181347265!GO:0046912;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;0.0449138181347265!GO:0042026;protein refolding;0.0455872343102538!GO:0006505;GPI anchor metabolic process;0.0457000320745259!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0459314335049687!GO:0050681;androgen receptor binding;0.0460844369328068!GO:0043631;RNA polyadenylation;0.0460844369328068!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.046174237654935!GO:0046112;nucleobase biosynthetic process;0.0475264828040911!GO:0005869;dynactin complex;0.0476464613776119!GO:0030384;phosphoinositide metabolic process;0.0476464613776119!GO:0051098;regulation of binding;0.0483620388444893!GO:0050811;GABA receptor binding;0.0483620388444893!GO:0001725;stress fiber;0.0483620388444893!GO:0032432;actin filament bundle;0.0483620388444893!GO:0003923;GPI-anchor transamidase activity;0.0484180948847299!GO:0016255;attachment of GPI anchor to protein;0.0484180948847299!GO:0042765;GPI-anchor transamidase complex;0.0484180948847299!GO:0005652;nuclear lamina;0.0485947599686493!GO:0031902;late endosome membrane;0.0485947599686493!GO:0009066;aspartate family amino acid metabolic process;0.0485947599686493!GO:0008361;regulation of cell size;0.0491436063551794!GO:0045893;positive regulation of transcription, DNA-dependent;0.0496678549152388 | |||
|sample_id=10513 | |sample_id=10513 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=HNF1A:3.06583846818;HNF4A_NR2F1,2:2.91576677331;FOXA2:2.07747986817;SNAI1..3:2.06952913165;LEF1_TCF7_TCF7L1,2:1.79040010615;FOX{F1,F2,J1}:1.76022898379;ZEB1:1.74269718529;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.71615833627;NFY{A,B,C}:1.53570490242;E2F1..5:1.41837478945;LHX3,4:1.39993910202;bHLH_family:1.37849117682;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.35279380345;MYOD1:1.25296948779;VSX1,2:1.19991715544;ADNP_IRX_SIX_ZHX:1.16086015688;POU2F1..3:1.04862113891;EN1,2:1.01294232739;TEAD1:0.946914874683;GATA6:0.933321801619;ONECUT1,2:0.822216153487;HOXA9_MEIS1:0.810349558401;HOX{A6,A7,B6,B7}:0.806341855979;ELK1,4_GABP{A,B1}:0.785955332913;SOX{8,9,10}:0.778393844614;SP1:0.772638519403;FOXN1:0.747190812919;TFDP1:0.735156972237;RBPJ:0.733552919442;NKX2-3_NKX2-5:0.722950798524;ESRRA:0.673846886301;XCPE1{core}:0.638734371675;NRF1:0.638598655605;MYB:0.580210974631;ZNF143:0.52702785081;YY1:0.526564839922;TBP:0.523901240541;SOX17:0.478400170866;FOXD3:0.461767807247;PBX1:0.447052962324;TEF:0.43135347902;CRX:0.368269980302;HOX{A5,B5}:0.33621498131;FOXP1:0.31943607684;EVI1:0.318994598676;HLF:0.301832981378;STAT5{A,B}:0.29553786084;ATF4:0.28937184219;FOXQ1:0.283545256825;ZNF148:0.283313465046;OCT4_SOX2{dimer}:0.281472915695;GFI1:0.278520007206;NKX3-2:0.276982677615;FOX{D1,D2}:0.218186571626;ESR1:0.196674332859;RORA:0.190044711457;PDX1:0.168745318429;SREBF1,2:0.159471114464;ARID5B:0.146862548942;DBP:0.134570075321;PITX1..3:0.103947343251;POU5F1:0.100923595552;LMO2:0.0816737187448;HBP1_HMGB_SSRP1_UBTF:0.0750827049814;CUX2:0.0589530466885;PAX8:0.0470893103788;HES1:0.0320343613335;FOX{I1,J2}:0.023139587432;IKZF1:-0.000838371840211;SOX2:-0.0124426186078;FOXM1:-0.0180389661025;NFIX:-0.0254849628228;HAND1,2:-0.0473908801352;TBX4,5:-0.0580215476813;HIC1:-0.0795000754822;MED-1{core}:-0.0884420488624;BREu{core}:-0.0887145722463;POU1F1:-0.0995903458825;HSF1,2:-0.106521882606;POU3F1..4:-0.121769177157;T:-0.15834816474;SOX5:-0.159671534411;PAX3,7:-0.174077762011;MYBL2:-0.182885362853;AIRE:-0.188494900078;ZFP161:-0.19424315104;NFE2:-0.21920837458;IKZF2:-0.232634890621;ATF6:-0.235820115021;PAX1,9:-0.235932258128;SRF:-0.238276570919;FOS_FOS{B,L1}_JUN{B,D}:-0.238307048965;HMGA1,2:-0.23968986481;ELF1,2,4:-0.242980930748;DMAP1_NCOR{1,2}_SMARC:-0.252710507162;STAT2,4,6:-0.253014574581;KLF4:-0.25708806522;RXRA_VDR{dimer}:-0.263723509942;PATZ1:-0.265255366358;PAX2:-0.290065577341;ALX1:-0.303319456354;MAZ:-0.303750883749;NFKB1_REL_RELA:-0.304308666273;TFCP2:-0.312024409668;HOX{A4,D4}:-0.315573988383;ATF5_CREB3:-0.317186072434;NHLH1,2:-0.317730255363;MTE{core}:-0.330728976681;JUN:-0.332545457012;TOPORS:-0.345398426927;BACH2:-0.364829307322;FOXO1,3,4:-0.389148715716;NANOG:-0.39063632366;STAT1,3:-0.394875933164;MEF2{A,B,C,D}:-0.396208805636;CDC5L:-0.400313433754;FOSL2:-0.402394052307;NFE2L2:-0.427805920343;CEBPA,B_DDIT3:-0.430866404003;PAX4:-0.43895561375;NR5A1,2:-0.441369173532;ZIC1..3:-0.457562783779;ATF2:-0.467312088682;POU6F1:-0.473220234091;EBF1:-0.477092160349;RFX1:-0.489926261524;NKX6-1,2:-0.49511326058;UFEwm:-0.498576945403;NFIL3:-0.508014271276;GFI1B:-0.510640909799;RFX2..5_RFXANK_RFXAP:-0.51492023968;ZBTB16:-0.530357114263;TP53:-0.536415909868;PAX5:-0.541878918794;SPZ1:-0.565444814015;REST:-0.566817354689;FOXL1:-0.573785284739;ZBTB6:-0.576722014798;TFAP2B:-0.586709860995;SPIB:-0.605226339396;RXR{A,B,G}:-0.64395262702;CREB1:-0.644092666994;PRRX1,2:-0.645445996758;ZNF384:-0.653076534449;TFAP2{A,C}:-0.657273246429;SPI1:-0.669271244974;AHR_ARNT_ARNT2:-0.679373449813;ALX4:-0.70369868465;RUNX1..3:-0.715834867357;TAL1_TCF{3,4,12}:-0.750973940205;TLX2:-0.757789290895;MYFfamily:-0.771884401669;XBP1:-0.780131644357;TFAP4:-0.819664451107;FOXP3:-0.823749214052;IRF7:-0.825254762743;CDX1,2,4:-0.826842151699;HIF1A:-0.829998782668;EGR1..3:-0.831582359535;PPARG:-0.852619418576;GTF2I:-0.854320001692;PRDM1:-0.875886042068;ETS1,2:-0.876203211598;MZF1:-0.88344617097;GTF2A1,2:-0.901752020242;MAFB:-0.942836489082;ZNF238:-0.965698643315;NR3C1:-1.03927427606;AR:-1.04027615536;MTF1:-1.05433684735;IRF1,2:-1.08569890061;NKX2-2,8:-1.109011404;TGIF1:-1.11945307463;GCM1,2:-1.12727754882;NR6A1:-1.14848222075;BPTF:-1.15424910796;RREB1:-1.22041501536;NANOG{mouse}:-1.31240477302;NKX2-1,4:-1.35453760983;SMAD1..7,9:-1.42512335604;NFATC1..3:-1.43525157531;EP300:-1.44638139183;GZF1:-1.46331443646;TLX1..3_NFIC{dimer}:-1.48605272066;NFE2L1:-1.5218071268;NR1H4:-1.54041743461;ZNF423:-1.54191462268;PAX6:-1.5737320654;GLI1..3:-1.59383092941;GATA4:-1.60991088923;HMX1:-1.61379313342;NKX3-1:-1.83411500716 | |top_motifs=HNF1A:3.06583846818;HNF4A_NR2F1,2:2.91576677331;FOXA2:2.07747986817;SNAI1..3:2.06952913165;LEF1_TCF7_TCF7L1,2:1.79040010615;FOX{F1,F2,J1}:1.76022898379;ZEB1:1.74269718529;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.71615833627;NFY{A,B,C}:1.53570490242;E2F1..5:1.41837478945;LHX3,4:1.39993910202;bHLH_family:1.37849117682;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.35279380345;MYOD1:1.25296948779;VSX1,2:1.19991715544;ADNP_IRX_SIX_ZHX:1.16086015688;POU2F1..3:1.04862113891;EN1,2:1.01294232739;TEAD1:0.946914874683;GATA6:0.933321801619;ONECUT1,2:0.822216153487;HOXA9_MEIS1:0.810349558401;HOX{A6,A7,B6,B7}:0.806341855979;ELK1,4_GABP{A,B1}:0.785955332913;SOX{8,9,10}:0.778393844614;SP1:0.772638519403;FOXN1:0.747190812919;TFDP1:0.735156972237;RBPJ:0.733552919442;NKX2-3_NKX2-5:0.722950798524;ESRRA:0.673846886301;XCPE1{core}:0.638734371675;NRF1:0.638598655605;MYB:0.580210974631;ZNF143:0.52702785081;YY1:0.526564839922;TBP:0.523901240541;SOX17:0.478400170866;FOXD3:0.461767807247;PBX1:0.447052962324;TEF:0.43135347902;CRX:0.368269980302;HOX{A5,B5}:0.33621498131;FOXP1:0.31943607684;EVI1:0.318994598676;HLF:0.301832981378;STAT5{A,B}:0.29553786084;ATF4:0.28937184219;FOXQ1:0.283545256825;ZNF148:0.283313465046;OCT4_SOX2{dimer}:0.281472915695;GFI1:0.278520007206;NKX3-2:0.276982677615;FOX{D1,D2}:0.218186571626;ESR1:0.196674332859;RORA:0.190044711457;PDX1:0.168745318429;SREBF1,2:0.159471114464;ARID5B:0.146862548942;DBP:0.134570075321;PITX1..3:0.103947343251;POU5F1:0.100923595552;LMO2:0.0816737187448;HBP1_HMGB_SSRP1_UBTF:0.0750827049814;CUX2:0.0589530466885;PAX8:0.0470893103788;HES1:0.0320343613335;FOX{I1,J2}:0.023139587432;IKZF1:-0.000838371840211;SOX2:-0.0124426186078;FOXM1:-0.0180389661025;NFIX:-0.0254849628228;HAND1,2:-0.0473908801352;TBX4,5:-0.0580215476813;HIC1:-0.0795000754822;MED-1{core}:-0.0884420488624;BREu{core}:-0.0887145722463;POU1F1:-0.0995903458825;HSF1,2:-0.106521882606;POU3F1..4:-0.121769177157;T:-0.15834816474;SOX5:-0.159671534411;PAX3,7:-0.174077762011;MYBL2:-0.182885362853;AIRE:-0.188494900078;ZFP161:-0.19424315104;NFE2:-0.21920837458;IKZF2:-0.232634890621;ATF6:-0.235820115021;PAX1,9:-0.235932258128;SRF:-0.238276570919;FOS_FOS{B,L1}_JUN{B,D}:-0.238307048965;HMGA1,2:-0.23968986481;ELF1,2,4:-0.242980930748;DMAP1_NCOR{1,2}_SMARC:-0.252710507162;STAT2,4,6:-0.253014574581;KLF4:-0.25708806522;RXRA_VDR{dimer}:-0.263723509942;PATZ1:-0.265255366358;PAX2:-0.290065577341;ALX1:-0.303319456354;MAZ:-0.303750883749;NFKB1_REL_RELA:-0.304308666273;TFCP2:-0.312024409668;HOX{A4,D4}:-0.315573988383;ATF5_CREB3:-0.317186072434;NHLH1,2:-0.317730255363;MTE{core}:-0.330728976681;JUN:-0.332545457012;TOPORS:-0.345398426927;BACH2:-0.364829307322;FOXO1,3,4:-0.389148715716;NANOG:-0.39063632366;STAT1,3:-0.394875933164;MEF2{A,B,C,D}:-0.396208805636;CDC5L:-0.400313433754;FOSL2:-0.402394052307;NFE2L2:-0.427805920343;CEBPA,B_DDIT3:-0.430866404003;PAX4:-0.43895561375;NR5A1,2:-0.441369173532;ZIC1..3:-0.457562783779;ATF2:-0.467312088682;POU6F1:-0.473220234091;EBF1:-0.477092160349;RFX1:-0.489926261524;NKX6-1,2:-0.49511326058;UFEwm:-0.498576945403;NFIL3:-0.508014271276;GFI1B:-0.510640909799;RFX2..5_RFXANK_RFXAP:-0.51492023968;ZBTB16:-0.530357114263;TP53:-0.536415909868;PAX5:-0.541878918794;SPZ1:-0.565444814015;REST:-0.566817354689;FOXL1:-0.573785284739;ZBTB6:-0.576722014798;TFAP2B:-0.586709860995;SPIB:-0.605226339396;RXR{A,B,G}:-0.64395262702;CREB1:-0.644092666994;PRRX1,2:-0.645445996758;ZNF384:-0.653076534449;TFAP2{A,C}:-0.657273246429;SPI1:-0.669271244974;AHR_ARNT_ARNT2:-0.679373449813;ALX4:-0.70369868465;RUNX1..3:-0.715834867357;TAL1_TCF{3,4,12}:-0.750973940205;TLX2:-0.757789290895;MYFfamily:-0.771884401669;XBP1:-0.780131644357;TFAP4:-0.819664451107;FOXP3:-0.823749214052;IRF7:-0.825254762743;CDX1,2,4:-0.826842151699;HIF1A:-0.829998782668;EGR1..3:-0.831582359535;PPARG:-0.852619418576;GTF2I:-0.854320001692;PRDM1:-0.875886042068;ETS1,2:-0.876203211598;MZF1:-0.88344617097;GTF2A1,2:-0.901752020242;MAFB:-0.942836489082;ZNF238:-0.965698643315;NR3C1:-1.03927427606;AR:-1.04027615536;MTF1:-1.05433684735;IRF1,2:-1.08569890061;NKX2-2,8:-1.109011404;TGIF1:-1.11945307463;GCM1,2:-1.12727754882;NR6A1:-1.14848222075;BPTF:-1.15424910796;RREB1:-1.22041501536;NANOG{mouse}:-1.31240477302;NKX2-1,4:-1.35453760983;SMAD1..7,9:-1.42512335604;NFATC1..3:-1.43525157531;EP300:-1.44638139183;GZF1:-1.46331443646;TLX1..3_NFIC{dimer}:-1.48605272066;NFE2L1:-1.5218071268;NR1H4:-1.54041743461;ZNF423:-1.54191462268;PAX6:-1.5737320654;GLI1..3:-1.59383092941;GATA4:-1.60991088923;HMX1:-1.61379313342;NKX3-1:-1.83411500716 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10513-107D9;search_select_hide=table117:FF:10513-107D9 | |||
}} | }} | ||
Latest revision as of 14:28, 3 June 2020
| Name: | colon carcinoma cell line:CACO-2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11280 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11280
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11280
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.667 |
| 10 | 10 | 0.533 |
| 100 | 100 | 0.278 |
| 101 | 101 | 0.635 |
| 102 | 102 | 0.372 |
| 103 | 103 | 0.892 |
| 104 | 104 | 0.629 |
| 105 | 105 | 0.777 |
| 106 | 106 | 0.0788 |
| 107 | 107 | 0.498 |
| 108 | 108 | 0.636 |
| 109 | 109 | 0.453 |
| 11 | 11 | 0.42 |
| 110 | 110 | 0.402 |
| 111 | 111 | 0.881 |
| 112 | 112 | 0.102 |
| 113 | 113 | 0.54 |
| 114 | 114 | 0.289 |
| 115 | 115 | 0.583 |
| 116 | 116 | 0.327 |
| 117 | 117 | 0.81 |
| 118 | 118 | 0.478 |
| 119 | 119 | 0.916 |
| 12 | 12 | 0.978 |
| 120 | 120 | 0.796 |
| 121 | 121 | 0.392 |
| 122 | 122 | 0.121 |
| 123 | 123 | 0.41 |
| 124 | 124 | 0.287 |
| 125 | 125 | 0.31 |
| 126 | 126 | 0.55 |
| 127 | 127 | 0.413 |
| 128 | 128 | 0.0522 |
| 129 | 129 | 0.979 |
| 13 | 13 | 0.00503 |
| 130 | 130 | 0.0705 |
| 131 | 131 | 0.165 |
| 132 | 132 | 0.613 |
| 133 | 133 | 0.0428 |
| 134 | 134 | 0.455 |
| 135 | 135 | 0.204 |
| 136 | 136 | 0.00648 |
| 137 | 137 | 0.0964 |
| 138 | 138 | 0.0331 |
| 139 | 139 | 0.0302 |
| 14 | 14 | 0.408 |
| 140 | 140 | 0.741 |
| 141 | 141 | 0.847 |
| 142 | 142 | 0.723 |
| 143 | 143 | 0.0983 |
| 144 | 144 | 0.409 |
| 145 | 145 | 0.508 |
| 146 | 146 | 0.798 |
| 147 | 147 | 0.512 |
| 148 | 148 | 0.405 |
| 149 | 149 | 0.641 |
| 15 | 15 | 0.729 |
| 150 | 150 | 0.494 |
| 151 | 151 | 0.208 |
| 152 | 152 | 0.375 |
| 153 | 153 | 0.594 |
| 154 | 154 | 0.0989 |
| 155 | 155 | 0.349 |
| 156 | 156 | 0.616 |
| 157 | 157 | 0.336 |
| 158 | 158 | 0.363 |
| 159 | 159 | 0.693 |
| 16 | 16 | 0.724 |
| 160 | 160 | 0.328 |
| 161 | 161 | 0.807 |
| 162 | 162 | 0.956 |
| 163 | 163 | 0.201 |
| 164 | 164 | 0.303 |
| 165 | 165 | 0.818 |
| 166 | 166 | 0.0431 |
| 167 | 167 | 0.812 |
| 168 | 168 | 0.24 |
| 169 | 169 | 0.488 |
| 17 | 17 | 0.791 |
| 18 | 18 | 0.0277 |
| 19 | 19 | 0.149 |
| 2 | 2 | 0.241 |
| 20 | 20 | 0.418 |
| 21 | 21 | 0.225 |
| 22 | 22 | 0.604 |
| 23 | 23 | 0.0224 |
| 24 | 24 | 0.622 |
| 25 | 25 | 0.886 |
| 26 | 26 | 0.992 |
| 27 | 27 | 0.337 |
| 28 | 28 | 0.876 |
| 29 | 29 | 0.702 |
| 3 | 3 | 0.427 |
| 30 | 30 | 0.654 |
| 31 | 31 | 0.712 |
| 32 | 32 | 0.0128 |
| 33 | 33 | 0.637 |
| 34 | 34 | 0.513 |
| 35 | 35 | 0.391 |
| 36 | 36 | 0.318 |
| 37 | 37 | 0.421 |
| 38 | 38 | 0.815 |
| 39 | 39 | 0.399 |
| 4 | 4 | 0.551 |
| 40 | 40 | 0.0343 |
| 41 | 41 | 0.0492 |
| 42 | 42 | 0.868 |
| 43 | 43 | 0.21 |
| 44 | 44 | 0.596 |
| 45 | 45 | 0.525 |
| 46 | 46 | 0.307 |
| 47 | 47 | 0.542 |
| 48 | 48 | 0.743 |
| 49 | 49 | 0.337 |
| 5 | 5 | 0.623 |
| 50 | 50 | 0.359 |
| 51 | 51 | 0.814 |
| 52 | 52 | 0.932 |
| 53 | 53 | 0.45 |
| 54 | 54 | 0.754 |
| 55 | 55 | 0.566 |
| 56 | 56 | 0.657 |
| 57 | 57 | 0.931 |
| 58 | 58 | 0.637 |
| 59 | 59 | 0.0616 |
| 6 | 6 | 0.84 |
| 60 | 60 | 0.373 |
| 61 | 61 | 0.319 |
| 62 | 62 | 0.25 |
| 63 | 63 | 0.553 |
| 64 | 64 | 0.667 |
| 65 | 65 | 0.0645 |
| 66 | 66 | 2.9958e-4 |
| 67 | 67 | 0.119 |
| 68 | 68 | 0.201 |
| 69 | 69 | 0.387 |
| 7 | 7 | 0.157 |
| 70 | 70 | 0.0944 |
| 71 | 71 | 0.494 |
| 72 | 72 | 0.578 |
| 73 | 73 | 0.604 |
| 74 | 74 | 0.166 |
| 75 | 75 | 0.692 |
| 76 | 76 | 0.947 |
| 77 | 77 | 0.214 |
| 78 | 78 | 0.00764 |
| 79 | 79 | 0.111 |
| 8 | 8 | 0.772 |
| 80 | 80 | 0.22 |
| 81 | 81 | 0.391 |
| 82 | 82 | 0.00826 |
| 83 | 83 | 0.651 |
| 84 | 84 | 0.483 |
| 85 | 85 | 0.0917 |
| 86 | 86 | 0.66 |
| 87 | 87 | 0.0819 |
| 88 | 88 | 0.991 |
| 89 | 89 | 0.0303 |
| 9 | 9 | 0.0469 |
| 90 | 90 | 0.778 |
| 91 | 91 | 0.00516 |
| 92 | 92 | 0.076 |
| 93 | 93 | 0.856 |
| 94 | 94 | 0.025 |
| 95 | 95 | 0.317 |
| 96 | 96 | 0.246 |
| 97 | 97 | 0.924 |
| 98 | 98 | 0.703 |
| 99 | 99 | 0.799 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11280
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100195 CACO-2 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002253 (epithelial cell of large intestine)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001052 (rectum)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101913 (colonic adenocarcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100797 (colonic cancer cell line)
0101532 (rectal cancer cell line sample)
0101914 (colorectal adenocarcinoma cell line sample)
0101616 (colorectal cancer cell line sample)
0100195 (CACO-2 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)
