FF:10784-110H1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005895 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548 | |accession_numbers=CAGE;DRX007954;DRR008826;DRZ000251;DRZ001636;DRZ011601;DRZ012986 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0003134,UBERON:0000344,UBERON:0005156,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3111,DOID:3603 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3111,DOID:3603 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100977,FF:0100811,FF:0104883 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.23!168.84!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.08!188.07!FOXQ1;;chr11:61520075..61520136,+!p1@C11orf9!1.92!168.20!C11orf9;;chr6:34204921..34204939,+!p3@HMGA1!1.68!1336.97!HMGA1;;chr3:111314186..111314204,-!p1@ZBED2!1.59!38.04!ZBED2;;chr17:46675558..46675577,-!p2@HOXB6!1.58!37.19!HOXB6;;chr6:10415484..10415508,-!p3@TFAP2A!1.55!34.23!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!1.54!33.60!SOX17;;chr20:50159198..50159299,-!p1@NFATC2!1.53!47.12!NFATC2;;chr6:10415276..10415341,-!p2@TFAP2A!1.49!36.13!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.48!29.16!HOXB6;;chr1:201979703..201979721,+!p2@ELF3!1.42!25.15!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.38!23.24!ELF3;;chr7:97840743..97840786,+!p1@BHLHA15!1.37!22.40!BHLHA15;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.13!ZBED1;;chr11:34642656..34642667,+!p2@EHF!1.31!19.44!EHF;;chr6:34204672..34204692,+!p1@HMGA1!1.30!2044.23!HMGA1;;chr13:73633131..73633149,+!p1@KLF5!1.29!194.41!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.71!IRF6;;chr5:2751762..2751784,-!p1@IRX2!1.29!18.60!IRX2;;chr17:46687959..46688007,-!p2@HOXB7!1.27!24.30!HOXB7;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.75!GRHL2;;chr14:75988771..75988826,+!p1@BATF!1.26!22.61!BATF;;chr17:46622229..46622257,-!p6@HOXB2!1.25!19.65!HOXB2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!71.21!FOXD1;;chr17:46622205..46622218,-!p3@HOXB2!1.22!18.17!HOXB2;;chr20:22564895..22564910,-!p1@FOXA2!1.22!15.64!FOXA2;;chr21:36421535..36421610,-!p2@RUNX1!1.21!53.25!RUNX1;;chr17:46622440..46622477,-!p5@HOXB2!1.21!16.90!HOXB2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.21!15.21!TFCP2L1;;chr12:27485762..27485776,+!p3@ARNTL2!1.20!39.30!ARNTL2;;chr11:65667884..65667895,-!p2@FOSL1!1.19!55.79!FOSL1;;chr5:134369905..134369972,-!p1@PITX1!1.19!22.19!PITX1;;chr1:37945588..37945604,+!p3@ZC3H12A!1.18!14.16!ZC3H12A;;chr11:65686732..65686756,+!p2@DRAP1!1.17!58.32!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!1.17!24.09!DRAP1;;chr3:12330560..12330579,+!p1@PPARG!1.11!13.52!PPARG;;chr12:77459306..77459365,-!p1@E2F7!1.10!143.90!E2F7;;chr11:65667846..65667868,-!p1@FOSL1!1.06!276.61!FOSL1;;chr12:27485823..27485868,+!p2@ARNTL2!1.06!43.11!ARNTL2;;chr18:19749541..19749557,+!p1@GATA6!1.06!33.18!GATA6;;chr5:72744445..72744466,-!p2@FOXD1!1.06!17.75!FOXD1;;chr15:67418047..67418093,+!p4@SMAD3!1.05!12.89!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!1.04!94.03!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!1.04!12.47!L3MBTL4;;chr3:12329358..12329393,+!p3@PPARG!1.03!24.30!PPARG;;chr2:70142232..70142251,+!p1@MXD1!1.01!53.67!MXD1;;chr15:67418119..67418162,+!p5@SMAD3!1.00!10.14!SMAD3;;chr3:69915385..69915438,+!p3@MITF!1.00!9.09!MITF;;chr5:50679228..50679288,+!p1@ISL1!1.00!9.09!ISL1;;chr6:10419768..10419819,-!p6@TFAP2A!1.00!9.09!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!0.99!41.42!HMGA2;;chr11:34645791..34645836,+!p3@EHF!0.99!8.66!EHF;;chr5:134369879..134369898,-!p2@PITX1!0.99!8.66!PITX1;;chr2:101436564..101436647,+!p1@NPAS2!0.98!176.87!NPAS2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.92!PPP1R13L;;chr12:80084737..80084763,-!p3@PAWR!0.98!33.18!PAWR;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.82!FOXA1;;chr12:27485785..27485816,+!p1@ARNTL2!0.92!52.41!ARNTL2;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.47!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!0.92!7.40!SIM2;;chr17:7493405..7493419,-!p1@SOX15!0.92!7.40!SOX15;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.07!HMGA2;;chr6:34524049..34524089,-!p2@SPDEF!0.91!7.18!SPDEF;;chr17:46703212..46703238,-!p2@HOXB9!0.91!7.18!HOXB9;;chr19:1753498..1753519,+!p1@ONECUT3!0.91!7.18!ONECUT3;;chr17:70117153..70117174,+!p1@SOX9!0.90!74.38!SOX9;;chr17:46621146..46621180,-!p10@HOXB2!0.89!6.76!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.89!6.76!HOXB8;;chr17:46687935..46687950,-!p3@HOXB7!0.88!6.55!HOXB7;;chr20:49547691..49547724,-!p2@ADNP!0.87!42.05!ADNP;;chr17:46675469..46675481,-!p4@HOXB6!0.87!6.34!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.87!6.34!HOXB8;;chr3:111314230..111314241,-!p2@ZBED2!0.87!6.34!ZBED2;;chr17:41623692..41623715,-!p1@ETV4!0.86!28.10!ETV4;;chr17:46692457..46692484,-!p2@HOXB8!0.85!6.13!HOXB8;;chr3:181429704..181429722,+!p1@SOX2!0.85!6.13!SOX2;;chr3:24536253..24536328,-!p1@THRB!0.84!11.62!THRB;;chr10:48355030..48355090,+!p1@ZNF488!0.84!7.82!ZNF488;;chr20:22565185..22565223,-!p3@FOXA2!0.84!5.92!FOXA2;;chr7:101917447..101917479,+!p4@CUX1!0.84!5.92!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.84!5.92!CUX1;;chr16:52581025..52581072,-!p1@TOX3!0.83!5.71!TOX3;;chr6:168227552..168227609,+!p1@MLLT4!0.81!48.18!MLLT4;;chr19:33865009..33865090,+!p3@CEBPG!0.81!7.40!CEBPG;;chr15:96869511..96869525,+!p16@NR2F2!0.81!6.13!NR2F2;;chr11:65554528..65554546,+!p1@OVOL1!0.81!5.49!OVOL1;;chr6:34210478..34210481,+!p8@HMGA1!0.81!5.49!HMGA1;;chr20:22565370..22565388,-!p2@FOXA2!0.81!5.49!FOXA2;;chr14:75988831..75988847,+!p2@BATF!0.80!5.28!BATF;;chr11:65554563..65554576,+!p2@OVOL1!0.80!5.28!OVOL1;;chr10:114710098..114710130,+!p2@TCF7L2!0.79!42.26!TCF7L2;;chr17:46621937..46621966,-!p2@HOXB2!0.79!14.79!HOXB2;;chr9:110250697..110250738,-!p2@KLF4!0.79!6.13!KLF4;;chr3:12329397..12329433,+!p2@PPARG!0.78!12.04!PPARG;;chr1:204042233..204042249,+!p1@SOX13!0.77!33.60!SOX13;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.58!EPAS1;;chr17:46621101..46621143,-!p7@HOXB2!0.77!6.76!HOXB2;;chr11:65686776..65686787,+!p9@DRAP1!0.77!5.92!DRAP1;;chr17:46675420..46675465,-!p3@HOXB6!0.77!5.71!HOXB6;;chr1:6479968..6479986,-!p1@HES2!0.77!4.86!HES2;;chr6:34524093..34524135,-!p1@SPDEF!0.77!4.86!SPDEF;;chr6:34205372..34205412,+!p5@HMGA1!0.76!26.41!HMGA1;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.18!HMGA2;;chr3:185826855..185826911,-!p1@ETV5!0.75!139.89!ETV5;;chr2:238600933..238600985,+!p3@LRRFIP1!0.74!27.05!LRRFIP1;;chr5:43120995..43121052,+!p1@ZNF131!0.74!25.36!ZNF131;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.45!GATA6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.74!4.44!LHX1;;chr3:69915369..69915381,+!p4@MITF!0.74!4.44!MITF;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.44!HOXC10;;chr13:45010939..45011033,-!p1@TSC22D1!0.72!313.16!TSC22D1;;chr17:41277372..41277418,-!p1@BRCA1!0.72!17.12!BRCA1;;chr15:67418099..67418118,+!p16@SMAD3!0.72!4.23!SMAD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.72!4.23!TFAP2A;;chr3:12329339..12329356,+!p5@PPARG!0.72!4.23!PPARG;;chr19:33864571..33864596,+!p2@CEBPG!0.70!10.78!CEBPG;;chr8:67525443..67525459,-!p2@MYBL1!0.70!6.34!MYBL1;;chr12:66218003..66218018,+!p9@HMGA2!0.70!5.07!HMGA2;;chr6:10415263..10415274,-!p8@TFAP2A!0.70!4.01!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.70!4.01!GATA4;;chr17:46675539..46675551,-!p7@HOXB6!0.70!4.01!HOXB6;;chr9:132427972..132428056,+!p1@PRRX2!0.69!5.28!PRRX2;;chr16:2059754..2059777,-!p2@ZNF598!0.68!14.79!ZNF598;;chr17:46692318..46692362,-!p5@HOXB8!0.68!3.80!HOXB8;;chr10:135122906..135122921,+!p4@ZNF511!0.68!3.80!ZNF511;;chr12:54366975..54367001,+!p1@HOXC11!0.68!3.80!HOXC11;;chr10:114709999..114710031,+!p1@TCF7L2!0.67!102.28!TCF7L2;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.84!HMGA1;;chr4:4291837..4291859,-!p2@LYAR!0.66!13.31!LYAR;;chr12:27485889..27485900,+!p4@ARNTL2!0.66!4.44!ARNTL2;;chr6:10419824..10419840,-!p9@TFAP2A!0.66!3.59!TFAP2A;;chr20:49547593..49547611,-!p3@ADNP!0.65!12.89!ADNP;;chr1:935398..935465,-!p2@HES4!0.64!7.61!HES4;;chr5:2751785..2751808,-!p2@IRX2!0.64!3.38!IRX2;;chr6:28048343..28048354,+!p1@ZNF165!0.64!3.38!ZNF165;;chr7:27153454..27153469,-!p2@HOXA3!0.64!3.38!HOXA3;;chr3:69811858..69811881,+!p5@MITF!0.64!3.38!MITF;;chr17:46622175..46622186,-!p12@HOXB2!0.64!3.38!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.64!3.38!HOXB9;;chr9:110252035..110252057,-!p1@KLF4!0.63!61.49!KLF4;;chr20:42295745..42295765,+!p1@MYBL2!0.62!62.34!MYBL2;;chrX:48900782..48900793,-!p3@TFE3!0.62!6.55!TFE3;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.71!GLI2;;chr17:46675619..46675642,-!p5@HOXB6!0.62!3.17!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!0.62!3.17!HOXB9;;chr20:49547731..49547753,-!p4@ADNP!0.61!8.88!ADNP;;chr3:101568349..101568365,+!p1@NFKBIZ!0.60!190.60!NFKBIZ;;chr20:49547910..49547988,-!p1@ADNP!0.60!135.45!ADNP;;chr7:86781916..86781963,+!p2@DMTF1!0.60!15.21!DMTF1;;chr5:178157651..178157689,-!p1@ZNF354A!0.60!14.58!ZNF354A;;chr6:1312155..1312187,+!p2@FOXQ1!0.60!2.96!FOXQ1;;chr8:102504690..102504704,+!p3@GRHL2!0.60!2.96!GRHL2;;chr17:46126136..46126152,+!p1@NFE2L1!0.59!183.00!NFE2L1;;chr7:99156249..99156311,+!p1@ZNF655!0.59!79.24!ZNF655;;chr10:43134001..43134026,-!p1@ZNF33B!0.59!15.43!ZNF33B;;chr19:19729477..19729542,-!p1@PBX4!0.59!6.97!PBX4;;chr3:185826814..185826825,-!p3@ETV5!0.59!5.92!ETV5;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.86!HOXB2;;chr21:36260980..36261011,-!p1@RUNX1!0.58!100.16!RUNX1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.58!30.64!ZBTB7A;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.18!HOXB2;;chr10:8095593..8095625,+!p3@GATA3!0.58!3.38!GATA3;;chr5:34929677..34929789,+!p1@DNAJC21!0.57!97.63!DNAJC21;;chr4:38665810..38665827,+!p1@KLF3!0.57!48.60!KLF3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.57!15.00!TAL1;;chr12:51566562..51566584,-!p2@TFCP2!0.57!8.88!TFCP2;;chr9:110251836..110251887,-!p4@KLF4!0.57!3.80!KLF4;;chr17:41623667..41623682,-!p8@ETV4!0.57!2.96!ETV4;;chr1:209979411..209979433,-!p2@IRF6!0.57!2.75!IRF6;;chr2:113994526..113994556,-!p3@PAX8!0.57!2.75!PAX8;;chr4:149363475..149363492,-!p2@NR3C2!0.57!2.75!NR3C2;;chr1:212782094..212782109,+!p1@ATF3!0.56!90.86!ATF3;;chr17:17740287..17740307,-!p1@SREBF1!0.56!86.85!SREBF1;;chr17:38256822..38256851,-!p1@NR1D1!0.56!25.78!NR1D1;;chr12:80084768..80084821,-!p2@PAWR!0.56!22.40!PAWR;;chr20:42295713..42295738,+!p2@MYBL2!0.56!19.02!MYBL2;;chr6:15246200..15246214,+!p2@JARID2!0.56!8.66!JARID2;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.23!SATB2;;chr17:36861393..36861439,+!p2@MLLT6!0.55!18.81!MLLT6;;chr6:126102292..126102329,+!p3@NCOA7!0.55!10.14!NCOA7;;chr1:158979872..158979898,+!p3@IFI16!0.55!9.51!IFI16;;chr10:114711019..114711041,+!p7@TCF7L2!0.55!4.23!TCF7L2;;chr6:34524025..34524045,-!p3@SPDEF!0.55!2.54!SPDEF;;chr15:67418177..67418204,+!p9@SMAD3!0.55!2.54!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.55!2.54!ETV4;;chr17:4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| |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.23!168.84!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.08!188.07!FOXQ1;;chr11:61520075..61520136,+!p1@C11orf9!1.92!168.20!C11orf9;;chr6:34204921..34204939,+!p3@HMGA1!1.68!1336.97!HMGA1;;chr3:111314186..111314204,-!p1@ZBED2!1.59!38.04!ZBED2;;chr17:46675558..46675577,-!p2@HOXB6!1.58!37.19!HOXB6;;chr6:10415484..10415508,-!p3@TFAP2A!1.55!34.23!TFAP2A;;chr8:55370487..55370503,+!p1@SOX17!1.54!33.60!SOX17;;chr20:50159198..50159299,-!p1@NFATC2!1.53!47.12!NFATC2;;chr6:10415276..10415341,-!p2@TFAP2A!1.49!36.13!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.48!29.16!HOXB6;;chr1:201979703..201979721,+!p2@ELF3!1.42!25.15!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.38!23.24!ELF3;;chr7:97840743..97840786,+!p1@BHLHA15!1.37!22.40!BHLHA15;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.13!ZBED1;;chr11:34642656..34642667,+!p2@EHF!1.31!19.44!EHF;;chr6:34204672..34204692,+!p1@HMGA1!1.30!2044.23!HMGA1;;chr13:73633131..73633149,+!p1@KLF5!1.29!194.41!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.71!IRF6;;chr5:2751762..2751784,-!p1@IRX2!1.29!18.60!IRX2;;chr17:46687959..46688007,-!p2@HOXB7!1.27!24.30!HOXB7;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.75!GRHL2;;chr14:75988771..75988826,+!p1@BATF!1.26!22.61!BATF;;chr17:46622229..46622257,-!p6@HOXB2!1.25!19.65!HOXB2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!71.21!FOXD1;;chr17:46622205..46622218,-!p3@HOXB2!1.22!18.17!HOXB2;;chr20:22564895..22564910,-!p1@FOXA2!1.22!15.64!FOXA2;;chr21:36421535..36421610,-!p2@RUNX1!1.21!53.25!RUNX1;;chr17:46622440..46622477,-!p5@HOXB2!1.21!16.90!HOXB2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.21!15.21!TFCP2L1;;chr12:27485762..27485776,+!p3@ARNTL2!1.20!39.30!ARNTL2;;chr11:65667884..65667895,-!p2@FOSL1!1.19!55.79!FOSL1;;chr5:134369905..134369972,-!p1@PITX1!1.19!22.19!PITX1;;chr1:37945588..37945604,+!p3@ZC3H12A!1.18!14.16!ZC3H12A;;chr11:65686732..65686756,+!p2@DRAP1!1.17!58.32!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!1.17!24.09!DRAP1;;chr3:12330560..12330579,+!p1@PPARG!1.11!13.52!PPARG;;chr12:77459306..77459365,-!p1@E2F7!1.10!143.90!E2F7;;chr11:65667846..65667868,-!p1@FOSL1!1.06!276.61!FOSL1;;chr12:27485823..27485868,+!p2@ARNTL2!1.06!43.11!ARNTL2;;chr18:19749541..19749557,+!p1@GATA6!1.06!33.18!GATA6;;chr5:72744445..72744466,-!p2@FOXD1!1.06!17.75!FOXD1;;chr15:67418047..67418093,+!p4@SMAD3!1.05!12.89!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!1.04!94.03!HMGA2;;chr18:6414884..6414942,-!p1@L3MBTL4!1.04!12.47!L3MBTL4;;chr3:12329358..12329393,+!p3@PPARG!1.03!24.30!PPARG;;chr2:70142232..70142251,+!p1@MXD1!1.01!53.67!MXD1;;chr15:67418119..67418162,+!p5@SMAD3!1.00!10.14!SMAD3;;chr3:69915385..69915438,+!p3@MITF!1.00!9.09!MITF;;chr5:50679228..50679288,+!p1@ISL1!1.00!9.09!ISL1;;chr6:10419768..10419819,-!p6@TFAP2A!1.00!9.09!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!0.99!41.42!HMGA2;;chr11:34645791..34645836,+!p3@EHF!0.99!8.66!EHF;;chr5:134369879..134369898,-!p2@PITX1!0.99!8.66!PITX1;;chr2:101436564..101436647,+!p1@NPAS2!0.98!176.87!NPAS2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.92!PPP1R13L;;chr12:80084737..80084763,-!p3@PAWR!0.98!33.18!PAWR;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.82!FOXA1;;chr12:27485785..27485816,+!p1@ARNTL2!0.92!52.41!ARNTL2;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.47!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!0.92!7.40!SIM2;;chr17:7493405..7493419,-!p1@SOX15!0.92!7.40!SOX15;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.07!HMGA2;;chr6:34524049..34524089,-!p2@SPDEF!0.91!7.18!SPDEF;;chr17:46703212..46703238,-!p2@HOXB9!0.91!7.18!HOXB9;;chr19:1753498..1753519,+!p1@ONECUT3!0.91!7.18!ONECUT3;;chr17:70117153..70117174,+!p1@SOX9!0.90!74.38!SOX9;;chr17:46621146..46621180,-!p10@HOXB2!0.89!6.76!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.89!6.76!HOXB8;;chr17:46687935..46687950,-!p3@HOXB7!0.88!6.55!HOXB7;;chr20:49547691..49547724,-!p2@ADNP!0.87!42.05!ADNP;;chr17:46675469..46675481,-!p4@HOXB6!0.87!6.34!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.87!6.34!HOXB8;;chr3:111314230..111314241,-!p2@ZBED2!0.87!6.34!ZBED2;;chr17:41623692..41623715,-!p1@ETV4!0.86!28.10!ETV4;;chr17:46692457..46692484,-!p2@HOXB8!0.85!6.13!HOXB8;;chr3:181429704..181429722,+!p1@SOX2!0.85!6.13!SOX2;;chr3:24536253..24536328,-!p1@THRB!0.84!11.62!THRB;;chr10:48355030..48355090,+!p1@ZNF488!0.84!7.82!ZNF488;;chr20:22565185..22565223,-!p3@FOXA2!0.84!5.92!FOXA2;;chr7:101917447..101917479,+!p4@CUX1!0.84!5.92!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.84!5.92!CUX1;;chr16:52581025..52581072,-!p1@TOX3!0.83!5.71!TOX3;;chr6:168227552..168227609,+!p1@MLLT4!0.81!48.18!MLLT4;;chr19:33865009..33865090,+!p3@CEBPG!0.81!7.40!CEBPG;;chr15:96869511..96869525,+!p16@NR2F2!0.81!6.13!NR2F2;;chr11:65554528..65554546,+!p1@OVOL1!0.81!5.49!OVOL1;;chr6:34210478..34210481,+!p8@HMGA1!0.81!5.49!HMGA1;;chr20:22565370..22565388,-!p2@FOXA2!0.81!5.49!FOXA2;;chr14:75988831..75988847,+!p2@BATF!0.80!5.28!BATF;;chr11:65554563..65554576,+!p2@OVOL1!0.80!5.28!OVOL1;;chr10:114710098..114710130,+!p2@TCF7L2!0.79!42.26!TCF7L2;;chr17:46621937..46621966,-!p2@HOXB2!0.79!14.79!HOXB2;;chr9:110250697..110250738,-!p2@KLF4!0.79!6.13!KLF4;;chr3:12329397..12329433,+!p2@PPARG!0.78!12.04!PPARG;;chr1:204042233..204042249,+!p1@SOX13!0.77!33.60!SOX13;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.58!EPAS1;;chr17:46621101..46621143,-!p7@HOXB2!0.77!6.76!HOXB2;;chr11:65686776..65686787,+!p9@DRAP1!0.77!5.92!DRAP1;;chr17:46675420..46675465,-!p3@HOXB6!0.77!5.71!HOXB6;;chr1:6479968..6479986,-!p1@HES2!0.77!4.86!HES2;;chr6:34524093..34524135,-!p1@SPDEF!0.77!4.86!SPDEF;;chr6:34205372..34205412,+!p5@HMGA1!0.76!26.41!HMGA1;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.18!HMGA2;;chr3:185826855..185826911,-!p1@ETV5!0.75!139.89!ETV5;;chr2:238600933..238600985,+!p3@LRRFIP1!0.74!27.05!LRRFIP1;;chr5:43120995..43121052,+!p1@ZNF131!0.74!25.36!ZNF131;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.45!GATA6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.74!4.44!LHX1;;chr3:69915369..69915381,+!p4@MITF!0.74!4.44!MITF;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.44!HOXC10;;chr13:45010939..45011033,-!p1@TSC22D1!0.72!313.16!TSC22D1;;chr17:41277372..41277418,-!p1@BRCA1!0.72!17.12!BRCA1;;chr15:67418099..67418118,+!p16@SMAD3!0.72!4.23!SMAD3;;chr6:10413188..10413249,-!p7@TFAP2A!0.72!4.23!TFAP2A;;chr3:12329339..12329356,+!p5@PPARG!0.72!4.23!PPARG;;chr19:33864571..33864596,+!p2@CEBPG!0.70!10.78!CEBPG;;chr8:67525443..67525459,-!p2@MYBL1!0.70!6.34!MYBL1;;chr12:66218003..66218018,+!p9@HMGA2!0.70!5.07!HMGA2;;chr6:10415263..10415274,-!p8@TFAP2A!0.70!4.01!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.70!4.01!GATA4;;chr17:46675539..46675551,-!p7@HOXB6!0.70!4.01!HOXB6;;chr9:132427972..132428056,+!p1@PRRX2!0.69!5.28!PRRX2;;chr16:2059754..2059777,-!p2@ZNF598!0.68!14.79!ZNF598;;chr17:46692318..46692362,-!p5@HOXB8!0.68!3.80!HOXB8;;chr10:135122906..135122921,+!p4@ZNF511!0.68!3.80!ZNF511;;chr12:54366975..54367001,+!p1@HOXC11!0.68!3.80!HOXC11;;chr10:114709999..114710031,+!p1@TCF7L2!0.67!102.28!TCF7L2;;chr6:34204973..34204990,+!p4@HMGA1!0.67!56.84!HMGA1;;chr4:4291837..4291859,-!p2@LYAR!0.66!13.31!LYAR;;chr12:27485889..27485900,+!p4@ARNTL2!0.66!4.44!ARNTL2;;chr6:10419824..10419840,-!p9@TFAP2A!0.66!3.59!TFAP2A;;chr20:49547593..49547611,-!p3@ADNP!0.65!12.89!ADNP;;chr1:935398..935465,-!p2@HES4!0.64!7.61!HES4;;chr5:2751785..2751808,-!p2@IRX2!0.64!3.38!IRX2;;chr6:28048343..28048354,+!p1@ZNF165!0.64!3.38!ZNF165;;chr7:27153454..27153469,-!p2@HOXA3!0.64!3.38!HOXA3;;chr3:69811858..69811881,+!p5@MITF!0.64!3.38!MITF;;chr17:46622175..46622186,-!p12@HOXB2!0.64!3.38!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.64!3.38!HOXB9;;chr9:110252035..110252057,-!p1@KLF4!0.63!61.49!KLF4;;chr20:42295745..42295765,+!p1@MYBL2!0.62!62.34!MYBL2;;chrX:48900782..48900793,-!p3@TFE3!0.62!6.55!TFE3;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.71!GLI2;;chr17:46675619..46675642,-!p5@HOXB6!0.62!3.17!HOXB6;;chr17:46703687..46703740,-!p1@HOXB9!0.62!3.17!HOXB9;;chr20:49547731..49547753,-!p4@ADNP!0.61!8.88!ADNP;;chr3:101568349..101568365,+!p1@NFKBIZ!0.60!190.60!NFKBIZ;;chr20:49547910..49547988,-!p1@ADNP!0.60!135.45!ADNP;;chr7:86781916..86781963,+!p2@DMTF1!0.60!15.21!DMTF1;;chr5:178157651..178157689,-!p1@ZNF354A!0.60!14.58!ZNF354A;;chr6:1312155..1312187,+!p2@FOXQ1!0.60!2.96!FOXQ1;;chr8:102504690..102504704,+!p3@GRHL2!0.60!2.96!GRHL2;;chr17:46126136..46126152,+!p1@NFE2L1!0.59!183.00!NFE2L1;;chr7:99156249..99156311,+!p1@ZNF655!0.59!79.24!ZNF655;;chr10:43134001..43134026,-!p1@ZNF33B!0.59!15.43!ZNF33B;;chr19:19729477..19729542,-!p1@PBX4!0.59!6.97!PBX4;;chr3:185826814..185826825,-!p3@ETV5!0.59!5.92!ETV5;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.86!HOXB2;;chr21:36260980..36261011,-!p1@RUNX1!0.58!100.16!RUNX1;;chr19:4065485..4065546,-!p2@ZBTB7A!0.58!30.64!ZBTB7A;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.18!HOXB2;;chr10:8095593..8095625,+!p3@GATA3!0.58!3.38!GATA3;;chr5:34929677..34929789,+!p1@DNAJC21!0.57!97.63!DNAJC21;;chr4:38665810..38665827,+!p1@KLF3!0.57!48.60!KLF3;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.57!15.00!TAL1;;chr12:51566562..51566584,-!p2@TFCP2!0.57!8.88!TFCP2;;chr9:110251836..110251887,-!p4@KLF4!0.57!3.80!KLF4;;chr17:41623667..41623682,-!p8@ETV4!0.57!2.96!ETV4;;chr1:209979411..209979433,-!p2@IRF6!0.57!2.75!IRF6;;chr2:113994526..113994556,-!p3@PAX8!0.57!2.75!PAX8;;chr4:149363475..149363492,-!p2@NR3C2!0.57!2.75!NR3C2;;chr1:212782094..212782109,+!p1@ATF3!0.56!90.86!ATF3;;chr17:17740287..17740307,-!p1@SREBF1!0.56!86.85!SREBF1;;chr17:38256822..38256851,-!p1@NR1D1!0.56!25.78!NR1D1;;chr12:80084768..80084821,-!p2@PAWR!0.56!22.40!PAWR;;chr20:42295713..42295738,+!p2@MYBL2!0.56!19.02!MYBL2;;chr6:15246200..15246214,+!p2@JARID2!0.56!8.66!JARID2;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.23!SATB2;;chr17:36861393..36861439,+!p2@MLLT6!0.55!18.81!MLLT6;;chr6:126102292..126102329,+!p3@NCOA7!0.55!10.14!NCOA7;;chr1:158979872..158979898,+!p3@IFI16!0.55!9.51!IFI16;;chr10:114711019..114711041,+!p7@TCF7L2!0.55!4.23!TCF7L2;;chr6:34524025..34524045,-!p3@SPDEF!0.55!2.54!SPDEF;;chr15:67418177..67418204,+!p9@SMAD3!0.55!2.54!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.55!2.54!ETV4;;chr17:4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| ||
|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316 | |||
|fonse_cell_line=FF:0100977,FF:0101120 | |fonse_cell_line=FF:0100977,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100977,FF:0101120 | |fonse_cell_line_closure=FF:0100977,FF:0101120 | ||
| Line 36: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mucinous%2520cystadenocarcinoma%2520cell%2520line%253aMCAS.CNhs11873.10784-110H1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10784-110H1 | |id=FF:10784-110H1 | ||
|is_a=DOID:3603;;EFO:0002091;;FF:0000210;;FF:0104883;;UBERON:0000344 | |is_a=DOID:3603;;EFO:0002091;;FF:0000210;;FF:0104883;;UBERON:0000344 | ||
|is_obsolete= | |is_obsolete= | ||
|name=mucinous cystadenocarcinoma | |library_id=CNhs11873 | ||
|library_id_phase_based=2:CNhs11873 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10784 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10784 | |||
|name=mucinous cystadenocarcinoma cell line:MCAS | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11873,LSID830,release010,COMPLETED | |profile_hcage=CNhs11873,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0416280319293049,0,0,0,0,-0.0770619662277763,0,-0.12174309181574,0.0254759625371975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112731849068333,0,0,0,0,0,-0.0147018324094477,0,0,-0.0497005259202525,0,0,0,0,0,0,0,0,0,0,0.213235139917941,0,0.0724291519342816,0,0,0,0,0,0,0,0,0.543807826255856,0,0,0,0,0,0,0.0832560638586098,0.0560978451477452,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15309020639035,0,0,0,0,0,0,0,0,0,0,0.0594051464449532,0,0,0,0.0722539865455596,-0.0546266452989715,0,0,0.0416280319293049,0.0832560638586098,-0.0147792873790966,-0.0203040656764151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422969658534836,0.15309020639035,0,0,0,-0.219936519498576,0,0,0,0,0,0 | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 78: | ||
|rna_weight_ug=27.71307 | |rna_weight_ug=27.71307 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0240 | |sample_cell_catalog=jcrb0240 | ||
|sample_cell_line=MCAS | |sample_cell_line=MCAS | ||
| Line 80: | Line 100: | ||
|top_motifs=ZEB1:2.0593910752;SNAI1..3:1.81259568322;FOXQ1:1.60679696463;VSX1,2:1.47795793875;ONECUT1,2:1.34228291945;NKX3-1:1.19526481102;POU2F1..3:1.18907525317;bHLH_family:1.08417602573;POU5F1:1.04212941887;FOXD3:0.957304123526;TFDP1:0.936544709336;TBX4,5:0.919048054413;HOX{A6,A7,B6,B7}:0.904120311951;PPARG:0.859749799989;NKX2-3_NKX2-5:0.827559712296;LMO2:0.792132082414;PITX1..3:0.770154135063;ZNF148:0.765630936825;PAX8:0.763194927888;ELK1,4_GABP{A,B1}:0.745601413499;CRX:0.744081006355;LEF1_TCF7_TCF7L1,2:0.706715174114;TEAD1:0.68023292746;ADNP_IRX_SIX_ZHX:0.664920170257;FOX{I1,J2}:0.664184124423;TFAP2{A,C}:0.637933233796;PBX1:0.62325544939;FOXA2:0.60958743568;E2F1..5:0.608799407064;MYB:0.571294716387;FOS_FOS{B,L1}_JUN{B,D}:0.567182222604;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543350124947;BACH2:0.51556105086;FOXM1:0.514240132036;BREu{core}:0.493078468155;OCT4_SOX2{dimer}:0.487784243664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.461518429241;POU1F1:0.46016173568;TFAP2B:0.454014091679;HOX{A5,B5}:0.43608327154;NKX2-2,8:0.417640609624;TEF:0.396056953646;MYOD1:0.391024640973;NANOG:0.376427160393;NR5A1,2:0.375258676534;SOX{8,9,10}:0.340073050912;FOSL2:0.312494470572;CDC5L:0.310838275319;POU6F1:0.299032748195;AIRE:0.287861348299;XCPE1{core}:0.267648269691;NFE2:0.236322302752;FOX{F1,F2,J1}:0.221175003098;STAT5{A,B}:0.217834501689;EN1,2:0.207719154941;GATA6:0.204939814723;FOXN1:0.204478410388;CEBPA,B_DDIT3:0.183706162262;TFCP2:0.175957007305;PAX2:0.111608949669;ELF1,2,4:0.105844172799;SP1:0.0851814080126;HLF:0.0848668479018;IKZF1:0.0834848959123;EGR1..3:0.0726434565625;LHX3,4:0.0653251708911;ARID5B:0.0532486574921;ATF4:0.0440957330143;NFIL3:0.0396674910739;HNF1A:-0.0199256051696;MTE{core}:-0.0433995655648;NFY{A,B,C}:-0.0445352369435;TAL1_TCF{3,4,12}:-0.0506242969998;SOX2:-0.0542127279778;NR6A1:-0.0550474561418;PRRX1,2:-0.055244265631;TBP:-0.0562052906928;CUX2:-0.0818939561469;GLI1..3:-0.0828876415018;MED-1{core}:-0.0903189956638;NFKB1_REL_RELA:-0.0903390888825;HES1:-0.157163710474;HNF4A_NR2F1,2:-0.181041729329;ZFP161:-0.186986668229;RORA:-0.189906613308;ATF5_CREB3:-0.19365895794;ATF6:-0.194939724025;HIC1:-0.198899212238;AHR_ARNT_ARNT2:-0.198965007062;MTF1:-0.202348136637;GTF2A1,2:-0.210863286307;ZNF143:-0.217471724087;ESR1:-0.222699412102;ALX1:-0.223164332694;TLX2:-0.239195677664;MEF2{A,B,C,D}:-0.246946488985;SPI1:-0.259413911815;ETS1,2:-0.263700153023;POU3F1..4:-0.269503823941;ZBTB6:-0.27467985114;SOX17:-0.288295825816;RREB1:-0.293771340488;ZNF384:-0.303494879283;TP53:-0.312898377428;FOXP1:-0.324824911234;BPTF:-0.325244407787;MAZ:-0.336225783961;NKX3-2:-0.33910377547;JUN:-0.342784538359;TOPORS:-0.35017734082;RFX2..5_RFXANK_RFXAP:-0.350467158102;SOX5:-0.358805678031;NKX2-1,4:-0.359635605554;TLX1..3_NFIC{dimer}:-0.363565994552;NRF1:-0.372712832738;IRF7:-0.374796356788;PAX4:-0.377131485543;CREB1:-0.389590198036;SPIB:-0.390484111273;NFE2L2:-0.391836446441;YY1:-0.399986460994;PRDM1:-0.400581615387;RUNX1..3:-0.404840755063;PAX5:-0.419597620845;AR:-0.448568809894;PATZ1:-0.45295497214;GFI1B:-0.458811146682;HMGA1,2:-0.460876361209;EP300:-0.467626252192;ZBTB16:-0.477213072751;FOXO1,3,4:-0.482180783328;FOXL1:-0.48402400728;GFI1:-0.503172878613;MZF1:-0.529522108886;PAX3,7:-0.530862673345;GTF2I:-0.552740974369;ATF2:-0.55970977888;IRF1,2:-0.580296174595;HIF1A:-0.581020453874;UFEwm:-0.605704498885;NR1H4:-0.620191539459;NKX6-1,2:-0.632220068192;EVI1:-0.632430182034;KLF4:-0.640631476024;PAX6:-0.643553822926;FOX{D1,D2}:-0.656496168637;REST:-0.661997215677;RXRA_VDR{dimer}:-0.66825130179;NR3C1:-0.682062372349;HBP1_HMGB_SSRP1_UBTF:-0.686459964645;DMAP1_NCOR{1,2}_SMARC:-0.702086476249;NFATC1..3:-0.707755709085;DBP:-0.713929656802;NFE2L1:-0.71694806536;STAT2,4,6:-0.726388782293;XBP1:-0.735493374878;ZNF423:-0.738098168385;ZIC1..3:-0.755270540621;EBF1:-0.758445278247;SREBF1,2:-0.778791790069;HMX1:-0.784265792138;RFX1:-0.784670396696;PAX1,9:-0.794308636141;PDX1:-0.804306384886;IKZF2:-0.805071808676;SRF:-0.826282610016;ALX4:-0.830178181791;NHLH1,2:-0.835148069692;SPZ1:-0.841895478535;CDX1,2,4:-0.849158923709;ESRRA:-0.890848764952;HSF1,2:-0.89404241012;TFAP4:-0.910954066494;HAND1,2:-0.924385997961;MYFfamily:-0.940787040645;MYBL2:-0.944533386104;TGIF1:-0.957870319195;HOX{A4,D4}:-0.973848066778;MAFB:-0.995971307664;HOXA9_MEIS1:-0.99662275528;FOXP3:-1.01096934804;RBPJ:-1.03519245065;GATA4:-1.07315115387;SMAD1..7,9:-1.20332283307;GCM1,2:-1.20964455507;NFIX:-1.32691292027;T:-1.37370277607;ZNF238:-1.37719592133;GZF1:-1.38138346984;RXR{A,B,G}:-1.4842769326;NANOG{mouse}:-1.62439593869;STAT1,3:-2.46182513324 | |top_motifs=ZEB1:2.0593910752;SNAI1..3:1.81259568322;FOXQ1:1.60679696463;VSX1,2:1.47795793875;ONECUT1,2:1.34228291945;NKX3-1:1.19526481102;POU2F1..3:1.18907525317;bHLH_family:1.08417602573;POU5F1:1.04212941887;FOXD3:0.957304123526;TFDP1:0.936544709336;TBX4,5:0.919048054413;HOX{A6,A7,B6,B7}:0.904120311951;PPARG:0.859749799989;NKX2-3_NKX2-5:0.827559712296;LMO2:0.792132082414;PITX1..3:0.770154135063;ZNF148:0.765630936825;PAX8:0.763194927888;ELK1,4_GABP{A,B1}:0.745601413499;CRX:0.744081006355;LEF1_TCF7_TCF7L1,2:0.706715174114;TEAD1:0.68023292746;ADNP_IRX_SIX_ZHX:0.664920170257;FOX{I1,J2}:0.664184124423;TFAP2{A,C}:0.637933233796;PBX1:0.62325544939;FOXA2:0.60958743568;E2F1..5:0.608799407064;MYB:0.571294716387;FOS_FOS{B,L1}_JUN{B,D}:0.567182222604;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.543350124947;BACH2:0.51556105086;FOXM1:0.514240132036;BREu{core}:0.493078468155;OCT4_SOX2{dimer}:0.487784243664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.461518429241;POU1F1:0.46016173568;TFAP2B:0.454014091679;HOX{A5,B5}:0.43608327154;NKX2-2,8:0.417640609624;TEF:0.396056953646;MYOD1:0.391024640973;NANOG:0.376427160393;NR5A1,2:0.375258676534;SOX{8,9,10}:0.340073050912;FOSL2:0.312494470572;CDC5L:0.310838275319;POU6F1:0.299032748195;AIRE:0.287861348299;XCPE1{core}:0.267648269691;NFE2:0.236322302752;FOX{F1,F2,J1}:0.221175003098;STAT5{A,B}:0.217834501689;EN1,2:0.207719154941;GATA6:0.204939814723;FOXN1:0.204478410388;CEBPA,B_DDIT3:0.183706162262;TFCP2:0.175957007305;PAX2:0.111608949669;ELF1,2,4:0.105844172799;SP1:0.0851814080126;HLF:0.0848668479018;IKZF1:0.0834848959123;EGR1..3:0.0726434565625;LHX3,4:0.0653251708911;ARID5B:0.0532486574921;ATF4:0.0440957330143;NFIL3:0.0396674910739;HNF1A:-0.0199256051696;MTE{core}:-0.0433995655648;NFY{A,B,C}:-0.0445352369435;TAL1_TCF{3,4,12}:-0.0506242969998;SOX2:-0.0542127279778;NR6A1:-0.0550474561418;PRRX1,2:-0.055244265631;TBP:-0.0562052906928;CUX2:-0.0818939561469;GLI1..3:-0.0828876415018;MED-1{core}:-0.0903189956638;NFKB1_REL_RELA:-0.0903390888825;HES1:-0.157163710474;HNF4A_NR2F1,2:-0.181041729329;ZFP161:-0.186986668229;RORA:-0.189906613308;ATF5_CREB3:-0.19365895794;ATF6:-0.194939724025;HIC1:-0.198899212238;AHR_ARNT_ARNT2:-0.198965007062;MTF1:-0.202348136637;GTF2A1,2:-0.210863286307;ZNF143:-0.217471724087;ESR1:-0.222699412102;ALX1:-0.223164332694;TLX2:-0.239195677664;MEF2{A,B,C,D}:-0.246946488985;SPI1:-0.259413911815;ETS1,2:-0.263700153023;POU3F1..4:-0.269503823941;ZBTB6:-0.27467985114;SOX17:-0.288295825816;RREB1:-0.293771340488;ZNF384:-0.303494879283;TP53:-0.312898377428;FOXP1:-0.324824911234;BPTF:-0.325244407787;MAZ:-0.336225783961;NKX3-2:-0.33910377547;JUN:-0.342784538359;TOPORS:-0.35017734082;RFX2..5_RFXANK_RFXAP:-0.350467158102;SOX5:-0.358805678031;NKX2-1,4:-0.359635605554;TLX1..3_NFIC{dimer}:-0.363565994552;NRF1:-0.372712832738;IRF7:-0.374796356788;PAX4:-0.377131485543;CREB1:-0.389590198036;SPIB:-0.390484111273;NFE2L2:-0.391836446441;YY1:-0.399986460994;PRDM1:-0.400581615387;RUNX1..3:-0.404840755063;PAX5:-0.419597620845;AR:-0.448568809894;PATZ1:-0.45295497214;GFI1B:-0.458811146682;HMGA1,2:-0.460876361209;EP300:-0.467626252192;ZBTB16:-0.477213072751;FOXO1,3,4:-0.482180783328;FOXL1:-0.48402400728;GFI1:-0.503172878613;MZF1:-0.529522108886;PAX3,7:-0.530862673345;GTF2I:-0.552740974369;ATF2:-0.55970977888;IRF1,2:-0.580296174595;HIF1A:-0.581020453874;UFEwm:-0.605704498885;NR1H4:-0.620191539459;NKX6-1,2:-0.632220068192;EVI1:-0.632430182034;KLF4:-0.640631476024;PAX6:-0.643553822926;FOX{D1,D2}:-0.656496168637;REST:-0.661997215677;RXRA_VDR{dimer}:-0.66825130179;NR3C1:-0.682062372349;HBP1_HMGB_SSRP1_UBTF:-0.686459964645;DMAP1_NCOR{1,2}_SMARC:-0.702086476249;NFATC1..3:-0.707755709085;DBP:-0.713929656802;NFE2L1:-0.71694806536;STAT2,4,6:-0.726388782293;XBP1:-0.735493374878;ZNF423:-0.738098168385;ZIC1..3:-0.755270540621;EBF1:-0.758445278247;SREBF1,2:-0.778791790069;HMX1:-0.784265792138;RFX1:-0.784670396696;PAX1,9:-0.794308636141;PDX1:-0.804306384886;IKZF2:-0.805071808676;SRF:-0.826282610016;ALX4:-0.830178181791;NHLH1,2:-0.835148069692;SPZ1:-0.841895478535;CDX1,2,4:-0.849158923709;ESRRA:-0.890848764952;HSF1,2:-0.89404241012;TFAP4:-0.910954066494;HAND1,2:-0.924385997961;MYFfamily:-0.940787040645;MYBL2:-0.944533386104;TGIF1:-0.957870319195;HOX{A4,D4}:-0.973848066778;MAFB:-0.995971307664;HOXA9_MEIS1:-0.99662275528;FOXP3:-1.01096934804;RBPJ:-1.03519245065;GATA4:-1.07315115387;SMAD1..7,9:-1.20332283307;GCM1,2:-1.20964455507;NFIX:-1.32691292027;T:-1.37370277607;ZNF238:-1.37719592133;GZF1:-1.38138346984;RXR{A,B,G}:-1.4842769326;NANOG{mouse}:-1.62439593869;STAT1,3:-2.46182513324 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10784-110H1;search_select_hide=table117:FF:10784-110H1 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | mucinous cystadenocarcinoma cell line:MCAS |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11873 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11873
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11873
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.581 |
| 10 | 10 | 0.956 |
| 100 | 100 | 0.885 |
| 101 | 101 | 0.0491 |
| 102 | 102 | 0.403 |
| 103 | 103 | 0.391 |
| 104 | 104 | 0.524 |
| 105 | 105 | 0.063 |
| 106 | 106 | 0.0745 |
| 107 | 107 | 0.104 |
| 108 | 108 | 0.388 |
| 109 | 109 | 0.00427 |
| 11 | 11 | 0.62 |
| 110 | 110 | 0.756 |
| 111 | 111 | 0.465 |
| 112 | 112 | 0.385 |
| 113 | 113 | 0.0373 |
| 114 | 114 | 0.65 |
| 115 | 115 | 0.813 |
| 116 | 116 | 0.25 |
| 117 | 117 | 0.621 |
| 118 | 118 | 0.568 |
| 119 | 119 | 0.582 |
| 12 | 12 | 0.673 |
| 120 | 120 | 0.602 |
| 121 | 121 | 0.947 |
| 122 | 122 | 0.015 |
| 123 | 123 | 0.62 |
| 124 | 124 | 0.0892 |
| 125 | 125 | 0.949 |
| 126 | 126 | 0.385 |
| 127 | 127 | 0.278 |
| 128 | 128 | 0.918 |
| 129 | 129 | 0.592 |
| 13 | 13 | 0.0757 |
| 130 | 130 | 0.415 |
| 131 | 131 | 0.512 |
| 132 | 132 | 0.857 |
| 133 | 133 | 0.12 |
| 134 | 134 | 0.0987 |
| 135 | 135 | 0.0274 |
| 136 | 136 | 0.112 |
| 137 | 137 | 0.332 |
| 138 | 138 | 0.789 |
| 139 | 139 | 0.665 |
| 14 | 14 | 0.967 |
| 140 | 140 | 0.794 |
| 141 | 141 | 0.246 |
| 142 | 142 | 0.671 |
| 143 | 143 | 0.22 |
| 144 | 144 | 0.0383 |
| 145 | 145 | 0.73 |
| 146 | 146 | 0.492 |
| 147 | 147 | 0.0562 |
| 148 | 148 | 0.138 |
| 149 | 149 | 0.207 |
| 15 | 15 | 0.179 |
| 150 | 150 | 0.256 |
| 151 | 151 | 0.816 |
| 152 | 152 | 0.0254 |
| 153 | 153 | 0.628 |
| 154 | 154 | 0.96 |
| 155 | 155 | 0.773 |
| 156 | 156 | 0.225 |
| 157 | 157 | 0.685 |
| 158 | 158 | 0.672 |
| 159 | 159 | 0.767 |
| 16 | 16 | 0.101 |
| 160 | 160 | 0.949 |
| 161 | 161 | 0.798 |
| 162 | 162 | 0.99 |
| 163 | 163 | 0.159 |
| 164 | 164 | 0.439 |
| 165 | 165 | 0.585 |
| 166 | 166 | 0.122 |
| 167 | 167 | 0.847 |
| 168 | 168 | 0.478 |
| 169 | 169 | 0.177 |
| 17 | 17 | 0.231 |
| 18 | 18 | 0.625 |
| 19 | 19 | 0.261 |
| 2 | 2 | 0.691 |
| 20 | 20 | 0.13 |
| 21 | 21 | 0.503 |
| 22 | 22 | 0.912 |
| 23 | 23 | 0.842 |
| 24 | 24 | 0.681 |
| 25 | 25 | 0.856 |
| 26 | 26 | 0.148 |
| 27 | 27 | 0.723 |
| 28 | 28 | 0.35 |
| 29 | 29 | 0.992 |
| 3 | 3 | 0.538 |
| 30 | 30 | 0.492 |
| 31 | 31 | 0.472 |
| 32 | 32 | 0.00728 |
| 33 | 33 | 0.0924 |
| 34 | 34 | 0.644 |
| 35 | 35 | 0.105 |
| 36 | 36 | 0.591 |
| 37 | 37 | 0.821 |
| 38 | 38 | 0.311 |
| 39 | 39 | 0.617 |
| 4 | 4 | 0.285 |
| 40 | 40 | 0.498 |
| 41 | 41 | 0.129 |
| 42 | 42 | 0.816 |
| 43 | 43 | 0.787 |
| 44 | 44 | 0.412 |
| 45 | 45 | 0.479 |
| 46 | 46 | 0.87 |
| 47 | 47 | 0.829 |
| 48 | 48 | 0.829 |
| 49 | 49 | 0.664 |
| 5 | 5 | 0.668 |
| 50 | 50 | 0.14 |
| 51 | 51 | 0.885 |
| 52 | 52 | 0.541 |
| 53 | 53 | 0.386 |
| 54 | 54 | 0.846 |
| 55 | 55 | 0.536 |
| 56 | 56 | 0.937 |
| 57 | 57 | 0.365 |
| 58 | 58 | 0.829 |
| 59 | 59 | 0.708 |
| 6 | 6 | 0.0255 |
| 60 | 60 | 0.19 |
| 61 | 61 | 0.189 |
| 62 | 62 | 0.649 |
| 63 | 63 | 0.117 |
| 64 | 64 | 0.973 |
| 65 | 65 | 0.562 |
| 66 | 66 | 0.0479 |
| 67 | 67 | 0.569 |
| 68 | 68 | 0.03 |
| 69 | 69 | 0.047 |
| 7 | 7 | 0.552 |
| 70 | 70 | 0.862 |
| 71 | 71 | 0.287 |
| 72 | 72 | 0.0556 |
| 73 | 73 | 0.0108 |
| 74 | 74 | 0.367 |
| 75 | 75 | 0.412 |
| 76 | 76 | 0.685 |
| 77 | 77 | 0.389 |
| 78 | 78 | 0.08 |
| 79 | 79 | 0.00327 |
| 8 | 8 | 0.958 |
| 80 | 80 | 0.556 |
| 81 | 81 | 0.0252 |
| 82 | 82 | 0.00638 |
| 83 | 83 | 0.253 |
| 84 | 84 | 0.465 |
| 85 | 85 | 0.361 |
| 86 | 86 | 0.549 |
| 87 | 87 | 0.0254 |
| 88 | 88 | 0.413 |
| 89 | 89 | 0.773 |
| 9 | 9 | 0.62 |
| 90 | 90 | 0.978 |
| 91 | 91 | 0.108 |
| 92 | 92 | 0.804 |
| 93 | 93 | 0.392 |
| 94 | 94 | 0.46 |
| 95 | 95 | 0.236 |
| 96 | 96 | 0.227 |
| 97 | 97 | 0.964 |
| 98 | 98 | 0.341 |
| 99 | 99 | 0.397 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11873
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3603 mucinous cystadenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104883 cystadenocarcinoma cell line sample
UBERON:0000344 mucosa
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3111 (cystadenocarcinoma)
3603 (mucinous cystadenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0003134 (female reproductive organ)
0000344 (mucosa)
0005156 (reproductive structure)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100977 (ovary cell line sample)
0100811 (ovary cancer cell line sample)
0104883 (cystadenocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
